MD05G1072000.v1.1

Cytochrome c biogenesis protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
15154684 .. 15158349
3666 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1072000.v1.1.491

Sequence Viewer

Length: 1713 bp
ATGGTGGCTCTAAACCCCACCACAGCCCCCAAATCATGTCTGCCCAGAACCCATTTTCTCAAGGCCCCTCTCCTCCACTGCCCCTTCAAGCCCATCACACTCTCTTTTCACAATTTTCAAATTCACAGACGTTCCTTCCGGCAGCCACCTCTCTCCCTCTCAGTCACCACCACTTGTGGGCTGAAGACCCCTCAAGACAGCAAGAAGAGCAAGAAAAAAGGAAATAACATAACCAAGCCAATTATACTCTCCGAAGGAGCGCCGCCGCCTCTTGTGGAGAAGAGTGGCGACGCCGACGGAGGCGAGGAAGCTTCGGTGAAGTCAGGGAGTGGGAGTGGGGTGATGGTTCTGATGAAAAGGTTGCCGAGAAGGGTTCTTTCGGTTCTGTCTTATCTGCCTTTGGCTATTGGAGAAATGTTTGCCATTGCTGGTCTTATGGCTCTGGGAACTTTCATTGATCAAGGTGAGGCCCCCGATTTCTATTTCGATAAATACCCTGAAAGTAATCCCGTGTTGGGAATTTTCACTTGGAGATGGGTTCTCACCCTTGGGTTTGATCACATGTTCACATCCCCCATTTTCCTTGCACTATTGACTCTCCTCGGTGCGTCACTAATGGCCTGCACTTACACTACACAAATACCCCTTGTCAAGGTTGCAAGAAGATGGAACTTCATGCAATCTTCTGAGGCCATCCACAAGCAGGAATTTTCGGACTCTTTGCCGAGAGCATCAGTTCAAGATTTGGGTGTTGTTCTTATGGGAGCTGGATATGAGGTATTTTTGAAGGGGCCTTCTTTATATGCTTTCAAGGGGCTGGCTGGTCGGTTTGCCCCTATTGGAGTACATCTAGCAATGCTGCTAATAATGGTAGGTGGAACTCTTAGTGCAAGCGGGAGCTTCAAAGGAACAGTTACGGTTCCACAGGGTTTGAATTTTGTTATAGGAGATGTGATGCACCCTATCGGTTTTCTCTCTACTCCAACTGAGGCTTTTAATGCAGAGGTTCATGTCAACAAATTCTACATGAACTACTACGACAGCGGTGAGGTATCACAATTTTACACTGATCTTTCACTATTGGACCTTGATGGTAAGGAGGTACTAAGGAAAACAATCAGTGTAAATAACCCTTTAAGGTATGGAGGGATCACGATTTACCAGACAGATTGGAGTATTTCGGCACTACAAGTACTCAAGGATAATGAAGGACCTTTTAATTTGGCGATGGCACCTCTTAAGATCAATGGAGACAAGAAGCTTTATGGGTCCTTCTTACCCATTGGAGATGTGAATGCTCCTAATGTTAAGGGAATATCAATGCTTGCTCGTGATCTACAATCGATTGTCCTGTATGATCAAGAAGGAAAATTTGCTGGAATCCGACGACCAAGTTCCAAGCTTCCAATTGAAATTGATGGCAACAAAATTGTTATTGTAGATGCAATTGGGAGCAGCGGTCTTGACTTGAAGACTGACCCAGGAGTGCCGGTTGTATATGCTGGATTTGGTGCTCTAATGCTCACTACTTGCATCAGTTTTCTTTCTCATTCGCAGATTTGGGCCTTACAAGATGGAACAGCAGTGATCGTAGGAGGAAAAACTAACCGAGCAAAGGGAGAGTTTCCAGAGGAGATGAACCGCTTGCTTGATCGTGTTCCAGAATTAGTTAACTCGCCTCTTTCCAGGCAATCAGATAGCATTGTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

571

Amino Acids

61.93

Weight (kDa)

8.83

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResB PF05140 134 - 394 4.8e-50 ResB-like family
ResB PF05140 449 - 546 1.9e-10 ResB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1231
AciI CCGC 6 cut(s) 263, 266, 894, 1044, 1458, 1642
AclWI GGATC 1 cut(s) 1157
AcsI RAATTY 6 cut(s) 120, 519, 707, 934, 1019, 1370
AcuI CTGAAG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 3 cut(s) 846, 1104, 1194
AfiI CCNNNNNNNGG 5 cut(s) 177, 515, 652, 703, 1615
AflII CTTAAG 1 cut(s) 1238
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 9 cut(s) 88, 119, 740, 787, 811, 904, 934, 1412, 1471
AjnI CCWGG 2 cut(s) 1480, 1685
AjuI GAANNNNNNNTTGG 2 cut(s) 511, 543
AluBI AGCT 5 cut(s) 311, 767, 900, 1261, 1402
AluI AGCT 5 cut(s) 311, 767, 900, 1261, 1402
Alw21I GWGCWC 1 cut(s) 1516
Alw26I GTCTC 1 cut(s) 1245
AlwI GGATC 1 cut(s) 1157
AoxI GGCC 6 cut(s) 63, 468, 618, 690, 791, 1563
ApeKI GCWGC 3 cut(s) 142, 859, 1455
ApoI RAATTY 6 cut(s) 120, 519, 707, 934, 1019, 1370
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 7 cut(s) 64, 469, 791, 1084, 1211, 1269, 1563
AsuHPI GGTGA 6 cut(s) 157, 328, 352, 476, 535, 1058
AvaII GGWCC 3 cut(s) 1084, 1211, 1269
BanI GGYRCC 1 cut(s) 1231
BauI CACGAG 1 cut(s) 1329
BbsI GAAGAC 2 cut(s) 191, 1478
Bbv12I GWGCWC 1 cut(s) 1516
BbvI GCAGC 3 cut(s) 154, 846, 1467
BccI CCATC 9 cut(s) 101, 337, 528, 660, 701, 1085, 1222, 1412, 1568
BciT130I CCWGG 2 cut(s) 1482, 1687
BclI TGATCA 3 cut(s) 457, 556, 1357
BcoDI GTCTC 1 cut(s) 1245
BfaI CTAG 2 cut(s) 851, 1711
BfoI RGCGCY 1 cut(s) 263
BfrI CTTAAG 1 cut(s) 1238
BisI GCNGC 5 cut(s) 143, 263, 266, 860, 1456
BlsI GCNGC 5 cut(s) 144, 264, 267, 861, 1457
BmcAI AGTACT 1 cut(s) 1194
Bme1390I CCNGG 2 cut(s) 1482, 1687
Bme18I GGWCC 3 cut(s) 1084, 1211, 1269
BmgT120I GGNCC 7 cut(s) 64, 469, 791, 1084, 1211, 1269, 1563
BmiI GGNNCC 6 cut(s) 66, 471, 792, 921, 1233, 1270
BmrFI CCNGG 2 cut(s) 1482, 1687
BmsI GCATC 4 cut(s) 740, 945, 1432, 1542
BpiI GAAGAC 2 cut(s) 191, 1478
BpuEI CTTGAG 3 cut(s) 44, 177, 1181
Bsa29I ATCGAT 1 cut(s) 1343
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 547, 601, 1480
BsaXI ACNNNNNCTCC 6 cut(s) 319, 349, 1444, 1474, 1476, 1506
Bsc4I CCNNNNNNNGG 5 cut(s) 177, 515, 652, 703, 1615
Bse118I RCCGGY 1 cut(s) 1489
Bse3DI GCAATG 2 cut(s) 423, 861
BseBI CCWGG 2 cut(s) 1482, 1687
BseCI ATCGAT 1 cut(s) 1343
BseDI CCNNGG 3 cut(s) 547, 601, 1480
BseGI GGATG 2 cut(s) 569, 693
BseLI CCNNNNNNNGG 5 cut(s) 177, 515, 652, 703, 1615
BseMI GCAATG 2 cut(s) 423, 861
BseMII CTCAG 3 cut(s) 174, 678, 978
BseRI GAGGAG 3 cut(s) 62, 590, 1646
BseXI GCAGC 3 cut(s) 154, 846, 1467
BsgI GTGCAG 1 cut(s) 607
BshFI GGCC 6 cut(s) 65, 470, 620, 692, 793, 1565
BshNI GGYRCC 1 cut(s) 1231
BshVI ATCGAT 1 cut(s) 1343
BsiHKAI GWGCWC 1 cut(s) 1516
BsiSI CCGG 2 cut(s) 139, 1490
BslI CCNNNNNNNGG 5 cut(s) 177, 515, 652, 703, 1615
BsmAI GTCTC 1 cut(s) 1245
BsmI GAATGC 1 cut(s) 1300
BsnI GGCC 6 cut(s) 65, 470, 620, 692, 793, 1565
Bsp1286I GDGCHC 1 cut(s) 1516
Bsp143I GATC 9 cut(s) 457, 556, 1069, 1149, 1242, 1333, 1357, 1587, 1651
BspACI CCGC 6 cut(s) 263, 266, 894, 1044, 1458, 1642
BspANI GGCC 6 cut(s) 65, 470, 620, 692, 793, 1565
BspCNI CTCAG 3 cut(s) 173, 679, 979
BspDI ATCGAT 1 cut(s) 1343
BspLI GGNNCC 6 cut(s) 66, 471, 792, 921, 1233, 1270
BspPI GGATC 1 cut(s) 1157
BspQI GCTCTTC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 1231
BspTI CTTAAG 1 cut(s) 1238
BsrDI GCAATG 2 cut(s) 423, 861
BsrFI RCCGGY 1 cut(s) 1489
BssAI RCCGGY 1 cut(s) 1489
BssECI CCNNGG 3 cut(s) 547, 601, 1480
BssMI GATC 9 cut(s) 457, 556, 1069, 1149, 1242, 1333, 1357, 1587, 1651
BssNI GRCGYC 1 cut(s) 291
BssSI CACGAG 1 cut(s) 1329
BssT1I CCWWGG 1 cut(s) 547
Bst2BI CACGAG 1 cut(s) 1329
Bst2UI CCWGG 2 cut(s) 1482, 1687
Bst4CI ACNGT 2 cut(s) 913, 919
Bst6I CTCTTC 2 cut(s) 200, 275
BstACI GRCGYC 1 cut(s) 291
BstAFI CTTAAG 1 cut(s) 1238
BstC8I GCNNGC 5 cut(s) 622, 819, 892, 1326, 1646
BstDEI CTNAG 5 cut(s) 160, 687, 884, 987, 1106
BstENI CCTNNNNNAGG 1 cut(s) 650
BstF5I GGATG 2 cut(s) 569, 693
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 9 cut(s) 460, 559, 1072, 1152, 1245, 1336, 1360, 1590, 1654
BstMAI GTCTC 1 cut(s) 1245
BstMBI GATC 9 cut(s) 457, 556, 1069, 1149, 1242, 1333, 1357, 1587, 1651
BstMWI GCNNNNNNNGC 3 cut(s) 207, 998, 1707
BstNI CCWGG 2 cut(s) 1482, 1687
BstNSI RCATGY 1 cut(s) 565
BstSCI CCNGG 2 cut(s) 1480, 1685
BstV1I GCAGC 3 cut(s) 154, 846, 1467
BstV2I GAAGAC 2 cut(s) 191, 1478
Bsu15I ATCGAT 1 cut(s) 1343
BsuRI GGCC 6 cut(s) 65, 470, 620, 692, 793, 1565
BsuTUI ATCGAT 1 cut(s) 1343
BtgZI GCGATG 1 cut(s) 1241
BtsCI GGATG 2 cut(s) 569, 693
BtsI GCAGTG 2 cut(s) 76, 1590
BtsIMutI CAGTG 4 cut(s) 76, 1065, 1126, 1590
Cac8I GCNNGC 5 cut(s) 622, 819, 892, 1326, 1646
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 1489
Cfr13I GGNCC 7 cut(s) 64, 469, 791, 1084, 1211, 1269, 1563
ClaI ATCGAT 1 cut(s) 1343
CseI GACGC 2 cut(s) 299, 597
Csp6I GTAC 3 cut(s) 845, 1103, 1193
CspCI CAANNNNNGTGG 2 cut(s) 912, 947
CviAII CATG 5 cut(s) 36, 562, 676, 1010, 1027
CviQI GTAC 3 cut(s) 845, 1103, 1193
DdeI CTNAG 5 cut(s) 160, 687, 884, 987, 1106
DpnI GATC 9 cut(s) 459, 558, 1071, 1151, 1244, 1335, 1359, 1589, 1653
DpnII GATC 9 cut(s) 457, 556, 1069, 1149, 1242, 1333, 1357, 1587, 1651
Eam1104I CTCTTC 2 cut(s) 200, 275
EarI CTCTTC 2 cut(s) 200, 275
Eco130I CCWWGG 1 cut(s) 547
Eco47I GGWCC 3 cut(s) 1084, 1211, 1269
Eco57I CTGAAG 1 cut(s) 203
EcoNI CCTNNNNNAGG 1 cut(s) 650
EcoO109I RGGNCCY 5 cut(s) 64, 469, 791, 1211, 1269
EcoRII CCWGG 2 cut(s) 1480, 1685
EcoT14I CCWWGG 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 5 cut(s) 39, 565, 679, 1013, 1030
FatI CATG 5 cut(s) 35, 561, 675, 1009, 1026
FauI CCCGC 1 cut(s) 887
FbaI TGATCA 3 cut(s) 457, 556, 1357
Fnu4HI GCNGC 5 cut(s) 143, 263, 266, 860, 1456
FokI GGATG 2 cut(s) 556, 680
Fsp4HI GCNGC 5 cut(s) 143, 263, 266, 860, 1456
FspBI CTAG 2 cut(s) 851, 1711
GlaI GCGC 1 cut(s) 261
GluI GCNGC 5 cut(s) 143, 263, 266, 860, 1456
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 6 cut(s) 65, 470, 620, 692, 793, 1565
HapII CCGG 2 cut(s) 139, 1490
HgaI GACGC 2 cut(s) 299, 597
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 5 cut(s) 39, 565, 679, 1013, 1030
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 2 cut(s) 1015, 1672
HindII GTYRAC 2 cut(s) 1015, 1672
HindIII AAGCTT 3 cut(s) 309, 1259, 1400
HinfI GANTC 3 cut(s) 595, 716, 1380
HpaI GTTAAC 1 cut(s) 1672
HpaII CCGG 2 cut(s) 139, 1490
HphI GGTGA 6 cut(s) 157, 328, 352, 476, 535, 1058
Hpy166II GTNNAC 3 cut(s) 567, 1015, 1672
Hpy188I TCNGA 6 cut(s) 253, 351, 688, 715, 1385, 1696
Hpy188III TCNNGA 8 cut(s) 194, 740, 1153, 1331, 1361, 1463, 1628, 1661
Hpy8I GTNNAC 3 cut(s) 567, 1015, 1672
Hpy99I CGWCG 3 cut(s) 293, 299, 1389
HpyAV CCTTC 9 cut(s) 94, 145, 248, 363, 781, 804, 1202, 1282, 1358
HpyCH4III ACNGT 2 cut(s) 913, 919
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 9 cut(s) 587, 624, 659, 679, 890, 958, 1001, 1445, 1533
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 998, 1707
HpyF3I CTNAG 5 cut(s) 160, 687, 884, 987, 1106
HpySE526I ACGT 1 cut(s) 130
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 5 cut(s) 39, 565, 679, 1013, 1030
HspAI GCGC 1 cut(s) 260
Ksp22I TGATCA 3 cut(s) 457, 556, 1357
KspAI GTTAAC 1 cut(s) 1672
Kzo9I GATC 9 cut(s) 457, 556, 1069, 1149, 1242, 1333, 1357, 1587, 1651
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 5 cut(s) 257, 764, 897, 1303, 1452
Lsp1109I GCAGC 3 cut(s) 154, 846, 1467
LweI GCATC 4 cut(s) 740, 945, 1432, 1542
MaeI CTAG 2 cut(s) 851, 1711
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 3 cut(s) 163, 609, 913
MalI GATC 9 cut(s) 459, 558, 1071, 1151, 1244, 1335, 1359, 1589, 1653
MboI GATC 9 cut(s) 457, 556, 1069, 1149, 1242, 1333, 1357, 1587, 1651
MboII GAAGA 6 cut(s) 196, 217, 292, 675, 675, 1483
MfeI CAATTG 2 cut(s) 1407, 1446
MhlI GDGCHC 1 cut(s) 1516
MlyI GAGTC 2 cut(s) 589, 710
MmeI TCCRAC 2 cut(s) 1007, 1408
MseI TTAA 6 cut(s) 996, 1136, 1218, 1239, 1308, 1671
MspA1I CMGCKG 2 cut(s) 1044, 1458
MspCI CTTAAG 1 cut(s) 1238
MspI CCGG 2 cut(s) 139, 1490
MspR9I CCNGG 2 cut(s) 1482, 1687
MunI CAATTG 2 cut(s) 1407, 1446
Mva1269I GAATGC 1 cut(s) 1300
MvaI CCWGG 2 cut(s) 1482, 1687
MwoI GCNNNNNNNGC 3 cut(s) 207, 998, 1707
NdeII GATC 9 cut(s) 457, 556, 1069, 1149, 1242, 1333, 1357, 1587, 1651
NlaIII CATG 5 cut(s) 39, 565, 679, 1013, 1030
NlaIV GGNNCC 6 cut(s) 66, 471, 792, 921, 1233, 1270
NmeAIII GCCGAG 2 cut(s) 390, 750
NmuCI GTSAC 2 cut(s) 163, 609
NspI RCATGY 1 cut(s) 565
PciI ACATGT 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 200
PctI GAATGC 1 cut(s) 1300
PfeI GAWTC 1 cut(s) 1380
PkrI GCNGC 5 cut(s) 144, 264, 267, 861, 1457
PleI GAGTC 2 cut(s) 589, 710
PpsI GAGTC 2 cut(s) 589, 710
PpuMI RGGWCCY 2 cut(s) 1211, 1269
PscI ACATGT 1 cut(s) 561
Psp5II RGGWCCY 2 cut(s) 1211, 1269
Psp6I CCWGG 2 cut(s) 1480, 1685
PspGI CCWGG 2 cut(s) 1480, 1685
PspN4I GGNNCC 6 cut(s) 66, 471, 792, 921, 1233, 1270
PspPI GGNCC 7 cut(s) 64, 469, 791, 1084, 1211, 1269, 1563
PspPPI RGGWCCY 2 cut(s) 1211, 1269
RsaI GTAC 3 cut(s) 846, 1104, 1194
RsaNI GTAC 3 cut(s) 845, 1103, 1193
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 6 cut(s) 996, 1136, 1218, 1239, 1308, 1671
SatI GCNGC 5 cut(s) 143, 263, 266, 860, 1456
Sau3AI GATC 9 cut(s) 457, 556, 1069, 1149, 1242, 1333, 1357, 1587, 1651
Sau96I GGNCC 7 cut(s) 64, 469, 791, 1084, 1211, 1269, 1563
ScaI AGTACT 1 cut(s) 1194
SchI GAGTC 2 cut(s) 589, 710
ScrFI CCNGG 2 cut(s) 1482, 1687
SduI GDGCHC 1 cut(s) 1516
SfaNI GCATC 4 cut(s) 740, 945, 1432, 1542
SinI GGWCC 3 cut(s) 1084, 1211, 1269
SmlI CTYRAG 4 cut(s) 59, 192, 1196, 1238
SmoI CTYRAG 4 cut(s) 59, 192, 1196, 1238
SsiI CCGC 6 cut(s) 263, 266, 894, 1044, 1458, 1642
SspMI CTAG 2 cut(s) 851, 1711
StyD4I CCNGG 2 cut(s) 1480, 1685
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 2 cut(s) 913, 919
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 486, 1343
TatI WGTACW 2 cut(s) 844, 1192
TauI GCSGC 2 cut(s) 265, 268
TfiI GAWTC 1 cut(s) 1380
Tru1I TTAA 6 cut(s) 996, 1136, 1218, 1239, 1308, 1671
Tru9I TTAA 6 cut(s) 996, 1136, 1218, 1239, 1308, 1671
TscAI CASTG 4 cut(s) 83, 1072, 1126, 1590
TseFI GTSAC 2 cut(s) 163, 609
TseI GCWGC 3 cut(s) 142, 859, 1455
Tsp45I GTSAC 2 cut(s) 163, 609
TspDTI ATGAA 7 cut(s) 368, 442, 664, 998, 1043, 1221, 1652
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 4 cut(s) 83, 1072, 1126, 1590
Vha464I CTTAAG 1 cut(s) 1238
VpaK11BI GGWCC 3 cut(s) 1084, 1211, 1269
XagI CCTNNNNNAGG 1 cut(s) 650
XapI RAATTY 6 cut(s) 120, 519, 707, 934, 1019, 1370
XceI RCATGY 1 cut(s) 565
XspI CTAG 2 cut(s) 851, 1711
ZrmI AGTACT 1 cut(s) 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.