MD10G1082600.v1.1

Cytochrome c biogenesis protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
12155011 .. 12158617
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1082600.v1.1.491

Sequence Viewer

Length: 1716 bp
ATGGAGATTTTAAACCCCACCACGGCCCCCAAATCATGTCTACCCAGAACCCATTTCCTCAAAGCCCCTCTCCTTCACTGCCCCTTCAAACTCACCACATTCTCTCCCCACACTTCCCAAATTCATAGACGTTCCTTCCGGCAACCACCTCTTTCGTTCTCAGTTACCACCACTTGTGGGCTGAAGACCCCTCAAGACAGCAAGAAGAGCAAGAACAAAAGAAACAACATAACTAAGCAGATTATACTCTCCGAAGGAGGGCCGCCGCCTCTGGTGGAGAAGAGTGGCGACGCCGCCGGAGGCGAGGAAGCTCCGGTGAAGTCAGGGGGTGGGACTGGGGTGATGGGTTTGGTGAAAAGGTTTCCTAGAAGGGTTCTTTCGGTTCTATCTTATCTGCCTTTGGCTATTGGAGAAATGTTTGCCATTGCTGGTCTTATGGCTCTGGTTGGAACTTTCATTGATCAAGGTGAGGCCCCGGATTTCTATTTCGATAAATACCCTGAAAATAATCCGGTGTTGGGAATTTTCACTTGGAGATGGGTTCTCACCCTTGGGTTTGACCACATATTCACTTCCCCCATTTTCCTTTCACTATTGGCTCTCCTTGGTGCATCGCTAATGGCCTGCACTTACACTACGCAAATACCCCTGGTCAAGGTTGCGAGAAGATGGAACTTTATGCAATCTTCTGAGGCCATCCACAAGCAGGAATTTTCGGACTCTTTGCCAAGAGCATCAGTTCAAGATTTGGGCGTTGTCCTTATGGGAGCTGGATATGAGGTATTCTTGAAAGGGCCTTCTTTATATGCCTTCAAGGGGCTGGCTGGTCGGTTTGCCCCTATTGGAGTACATCTAGCAATGCTGCTAATAATGGTAGGTGGAACTCTTAGTGCAAGTGGGAGCTTCAAGGGAACGGTCATGGTTCCTCAGGGTTTGAATTTTGTTATAGGAGATGTGATGCGCCCAATCGGGTTTCTCTCTACTCCAACTGAGTCTTTTAATACAGAGGTTCATGTCAACAAATTCTACATGAACTACTATGACAGTGGTGAGGTATCACAGTTTTACACCGATCTTTCACTATTGGACCTTGACGGCAAGGAGGTGCTAAGGAAAACAATAAGTGTAAATAACCCTTTAAGGTATGGAGGGATCACGATTTACCAGACAGACTGGAGTATTTCAGCGCTTCAAGTACTCAAGGATAACGAAGGACCTTTCAATTTGGCGATGGCACCTCTTAAGATAAATGGAGACAAGAAGCTTTATGGGTCCTTCTTACCCATTGGCAATGTTAATGCTCCTAATGTCAAGGGAATATCAATGCTTGCTCGTGATCTACAATCAATTGTCCTGTATGATCAAGAAGGAAAATTTGCTGGAGTCCGACGACCAAGTTCCAAGCTTCCAATTGAAATTGATGGCAACAAAATTGTTATTGTAGATGCAATTGGGAGTAGCGGTCTTGACTTGAAGACTGACCCAGGAGTGCCTGTTGTATATGCTGGATTTGGTGCTCTAATGCTTACTACTTGCATCAGTTTTCTTTCTCATTCACAGATTTGGGCCTTACAAGATGGAACAGCAGTGATCGTAGGAGGAAAAACTAACCGAGCAAAGGGAGAATTTCCCGAGGAGATGAACCGTTTGCTTGATCGGGTTCCAGAACTAGTTAACTCATCTCTTTCCAGGCAATCAGATAGCACTGTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

572

Amino Acids

62.11

Weight (kDa)

9.02

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResB PF05140 134 - 396 4.1e-50 ResB-like family
ResB PF05140 450 - 547 2e-10 ResB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1234
AccI GTMKAC 1 cut(s) 40
AciI CCGC 4 cut(s) 263, 266, 294, 1461
AclWI GGATC 1 cut(s) 1160
AcsI RAATTY 7 cut(s) 120, 522, 710, 937, 1022, 1373, 1625
AcuI CTGAAG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 2 cut(s) 849, 1197
AfeI AGCGCT 1 cut(s) 1188
AfiI CCNNNNNNNGG 8 cut(s) 22, 177, 258, 518, 655, 706, 816, 1618
AflII CTTAAG 1 cut(s) 1241
AhlI ACTAGT 1 cut(s) 1669
AjnI CCWGG 3 cut(s) 648, 1483, 1688
AjuI GAANNNNNNNTTGG 2 cut(s) 514, 546
AluBI AGCT 5 cut(s) 311, 770, 903, 1264, 1405
AluI AGCT 5 cut(s) 311, 770, 903, 1264, 1405
Alw21I GWGCWC 1 cut(s) 1519
Alw26I GTCTC 1 cut(s) 1248
AlwI GGATC 1 cut(s) 1160
Ama87I CYCGRG 1 cut(s) 1631
Aor51HI AGCGCT 1 cut(s) 1188
AoxI GGCC 7 cut(s) 24, 260, 471, 621, 693, 794, 1566
ApeKI GCWGC 1 cut(s) 862
ApoI RAATTY 7 cut(s) 120, 522, 710, 937, 1022, 1373, 1625
AspLEI GCGC 2 cut(s) 963, 1189
AspS9I GGNCC 8 cut(s) 25, 260, 472, 794, 1087, 1214, 1272, 1566
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 7 cut(s) 85, 328, 352, 364, 479, 538, 1061
AvaI CYCGRG 1 cut(s) 1631
AvaII GGWCC 3 cut(s) 1087, 1214, 1272
AxyI CCTNAGG 1 cut(s) 927
BanI GGYRCC 1 cut(s) 1234
BauI CACGAG 1 cut(s) 1332
BbsI GAAGAC 2 cut(s) 191, 1481
Bbv12I GWGCWC 1 cut(s) 1519
BbvI GCAGC 1 cut(s) 849
BccI CCATC 7 cut(s) 337, 531, 663, 704, 1225, 1415, 1571
BceAI ACGGC 2 cut(s) 39, 1111
BciT130I CCWGG 3 cut(s) 650, 1485, 1690
BclI TGATCA 2 cut(s) 460, 1360
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 1 cut(s) 1248
BcuI ACTAGT 1 cut(s) 1669
BfaI CTAG 4 cut(s) 366, 854, 1670, 1714
BfoI RGCGCY 1 cut(s) 1190
BfrI CTTAAG 1 cut(s) 1241
BisI GCNGC 4 cut(s) 263, 266, 294, 863
BlsI GCNGC 4 cut(s) 264, 267, 295, 864
BmcAI AGTACT 1 cut(s) 1197
Bme1390I CCNGG 4 cut(s) 476, 650, 1485, 1690
Bme18I GGWCC 3 cut(s) 1087, 1214, 1272
BmeT110I CYCGRG 1 cut(s) 1631
BmgT120I GGNCC 8 cut(s) 25, 260, 472, 794, 1087, 1214, 1272, 1566
BmiI GGNNCC 6 cut(s) 27, 474, 924, 1236, 1273, 1662
BmrFI CCNGG 4 cut(s) 476, 650, 1485, 1690
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 5 cut(s) 620, 743, 948, 1435, 1545
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 2 cut(s) 191, 1481
BpmI CTGGAG 2 cut(s) 1195, 1401
Bpu10I CCTNAGC 1 cut(s) 1109
BpuEI CTTGAG 2 cut(s) 177, 1184
BpuMI CCSGG 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 7 cut(s) 21, 474, 550, 604, 648, 1483, 1632
BsaWI WCCGGW 2 cut(s) 313, 511
BsaXI ACNNNNNCTCC 6 cut(s) 88, 118, 1447, 1477, 1479, 1509
Bsc4I CCNNNNNNNGG 8 cut(s) 22, 177, 258, 518, 655, 706, 816, 1618
Bse1I ACTGG 2 cut(s) 340, 1178
Bse21I CCTNAGG 1 cut(s) 927
Bse3DI GCAATG 3 cut(s) 423, 864, 1297
BseBI CCWGG 3 cut(s) 650, 1485, 1690
BseDI CCNNGG 7 cut(s) 21, 474, 550, 604, 648, 1483, 1632
BseGI GGATG 1 cut(s) 696
BseLI CCNNNNNNNGG 8 cut(s) 22, 177, 258, 518, 655, 706, 816, 1618
BseMI GCAATG 3 cut(s) 423, 864, 1297
BseMII CTCAG 4 cut(s) 174, 681, 941, 981
BseNI ACTGG 2 cut(s) 340, 1178
BseRI GAGGAG 1 cut(s) 1649
BseXI GCAGC 1 cut(s) 849
BsgI GTGCAG 1 cut(s) 610
BshFI GGCC 7 cut(s) 26, 262, 473, 623, 695, 796, 1568
BshNI GGYRCC 1 cut(s) 1234
BsiHKAI GWGCWC 1 cut(s) 1519
BsiHKCI CYCGRG 1 cut(s) 1631
BsiSI CCGG 5 cut(s) 139, 297, 314, 476, 512
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 8 cut(s) 22, 177, 258, 518, 655, 706, 816, 1618
BsmAI GTCTC 1 cut(s) 1248
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 7 cut(s) 26, 262, 473, 623, 695, 796, 1568
BsoBI CYCGRG 1 cut(s) 1631
Bsp1286I GDGCHC 1 cut(s) 1519
Bsp143I GATC 7 cut(s) 460, 1072, 1152, 1336, 1360, 1590, 1654
BspACI CCGC 4 cut(s) 263, 266, 294, 1461
BspANI GGCC 7 cut(s) 26, 262, 473, 623, 695, 796, 1568
BspCNI CTCAG 4 cut(s) 173, 682, 940, 982
BspLI GGNNCC 6 cut(s) 27, 474, 924, 1236, 1273, 1662
BspPI GGATC 1 cut(s) 1160
BspQI GCTCTTC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 1234
BspTI CTTAAG 1 cut(s) 1241
BsrDI GCAATG 3 cut(s) 423, 864, 1297
BsrI ACTGG 2 cut(s) 340, 1178
BssECI CCNNGG 7 cut(s) 21, 474, 550, 604, 648, 1483, 1632
BssMI GATC 7 cut(s) 460, 1072, 1152, 1336, 1360, 1590, 1654
BssNI GRCGYC 1 cut(s) 291
BssSI CACGAG 1 cut(s) 1332
BssT1I CCWWGG 2 cut(s) 550, 604
Bst2BI CACGAG 1 cut(s) 1332
Bst2UI CCWGG 3 cut(s) 650, 1485, 1690
Bst4CI ACNGT 5 cut(s) 916, 1046, 1062, 1646, 1708
Bst6I CTCTTC 2 cut(s) 200, 275
BstACI GRCGYC 1 cut(s) 291
BstAFI CTTAAG 1 cut(s) 1241
BstC8I GCNNGC 3 cut(s) 625, 822, 1329
BstDEI CTNAG 7 cut(s) 160, 234, 690, 887, 927, 990, 1109
BstDSI CCRYGG 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 653
BstF5I GGATG 1 cut(s) 696
BstH2I RGCGCY 1 cut(s) 1190
BstHHI GCGC 2 cut(s) 963, 1189
BstKTI GATC 7 cut(s) 463, 1075, 1155, 1339, 1363, 1593, 1657
BstMAI GTCTC 1 cut(s) 1248
BstMBI GATC 7 cut(s) 460, 1072, 1152, 1336, 1360, 1590, 1654
BstMWI GCNNNNNNNGC 2 cut(s) 207, 1710
BstNI CCWGG 3 cut(s) 650, 1485, 1690
BstSCI CCNGG 4 cut(s) 474, 648, 1483, 1688
BstV1I GCAGC 1 cut(s) 849
BstV2I GAAGAC 2 cut(s) 191, 1481
Bsu36I CCTNAGG 1 cut(s) 927
BsuRI GGCC 7 cut(s) 26, 262, 473, 623, 695, 796, 1568
BtgI CCRYGG 1 cut(s) 21
BtgZI GCGATG 2 cut(s) 597, 1244
BtsCI GGATG 1 cut(s) 696
BtsI GCAGTG 2 cut(s) 76, 1593
BtsIMutI CAGTG 4 cut(s) 76, 1051, 1593, 1704
Cac8I GCNNGC 3 cut(s) 625, 822, 1329
CfoI GCGC 2 cut(s) 963, 1189
Cfr13I GGNCC 8 cut(s) 25, 260, 472, 794, 1087, 1214, 1272, 1566
CseI GACGC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 848, 1196
CviAII CATG 4 cut(s) 36, 919, 1013, 1030
CviQI GTAC 2 cut(s) 848, 1196
DdeI CTNAG 7 cut(s) 160, 234, 690, 887, 927, 990, 1109
DpnI GATC 7 cut(s) 462, 1074, 1154, 1338, 1362, 1592, 1656
DpnII GATC 7 cut(s) 460, 1072, 1152, 1336, 1360, 1590, 1654
DraI TTTAAA 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 200, 275
EarI CTCTTC 2 cut(s) 200, 275
Eco130I CCWWGG 2 cut(s) 550, 604
Eco47I GGWCC 3 cut(s) 1087, 1214, 1272
Eco47III AGCGCT 1 cut(s) 1188
Eco57I CTGAAG 1 cut(s) 203
Eco81I CCTNAGG 1 cut(s) 927
Eco88I CYCGRG 1 cut(s) 1631
EcoNI CCTNNNNNAGG 1 cut(s) 653
EcoO109I RGGNCCY 4 cut(s) 472, 794, 1214, 1272
EcoRII CCWGG 3 cut(s) 648, 1483, 1688
EcoT14I CCWWGG 2 cut(s) 550, 604
ErhI CCWWGG 2 cut(s) 550, 604
FaeI CATG 4 cut(s) 39, 922, 1016, 1033
FaqI GGGAC 1 cut(s) 346
FatI CATG 4 cut(s) 35, 918, 1012, 1029
FbaI TGATCA 2 cut(s) 460, 1360
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 4 cut(s) 263, 266, 294, 863
FokI GGATG 1 cut(s) 683
Fsp4HI GCNGC 4 cut(s) 263, 266, 294, 863
FspBI CTAG 4 cut(s) 366, 854, 1670, 1714
GlaI GCGC 2 cut(s) 962, 1188
GluI GCNGC 4 cut(s) 263, 266, 294, 863
GsuI CTGGAG 2 cut(s) 1195, 1401
HaeII RGCGCY 1 cut(s) 1190
HaeIII GGCC 7 cut(s) 26, 262, 473, 623, 695, 796, 1568
HapII CCGG 5 cut(s) 139, 297, 314, 476, 512
HgaI GACGC 1 cut(s) 299
HhaI GCGC 2 cut(s) 963, 1189
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 4 cut(s) 39, 922, 1016, 1033
Hin6I GCGC 2 cut(s) 961, 1187
HinP1I GCGC 2 cut(s) 961, 1187
HincII GTYRAC 2 cut(s) 1018, 1675
HindII GTYRAC 2 cut(s) 1018, 1675
HindIII AAGCTT 2 cut(s) 1262, 1403
HinfI GANTC 3 cut(s) 719, 992, 1383
HpaI GTTAAC 1 cut(s) 1675
HpaII CCGG 5 cut(s) 139, 297, 314, 476, 512
HphI GGTGA 7 cut(s) 85, 328, 352, 364, 479, 538, 1061
Hpy166II GTNNAC 3 cut(s) 41, 1018, 1675
Hpy188I TCNGA 5 cut(s) 253, 691, 718, 1388, 1699
Hpy188III TCNNGA 9 cut(s) 194, 743, 787, 1156, 1334, 1364, 1466, 1631, 1664
Hpy8I GTNNAC 3 cut(s) 41, 1018, 1675
Hpy99I CGWCG 2 cut(s) 293, 1392
HpyCH4III ACNGT 5 cut(s) 916, 1046, 1062, 1646, 1708
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 6 cut(s) 611, 627, 682, 893, 1448, 1536
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 1710
HpyF3I CTNAG 7 cut(s) 160, 234, 690, 887, 927, 990, 1109
HpySE526I ACGT 1 cut(s) 130
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 4 cut(s) 39, 922, 1016, 1033
HspAI GCGC 2 cut(s) 961, 1187
Ksp22I TGATCA 2 cut(s) 460, 1360
KspAI GTTAAC 1 cut(s) 1675
Kzo9I GATC 7 cut(s) 460, 1072, 1152, 1336, 1360, 1590, 1654
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 4 cut(s) 316, 767, 900, 1306
Lsp1109I GCAGC 1 cut(s) 849
LweI GCATC 5 cut(s) 620, 743, 948, 1435, 1545
MaeI CTAG 4 cut(s) 366, 854, 1670, 1714
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 163
MalI GATC 7 cut(s) 462, 1074, 1154, 1338, 1362, 1592, 1656
MboI GATC 7 cut(s) 460, 1072, 1152, 1336, 1360, 1590, 1654
MboII GAAGA 6 cut(s) 196, 217, 292, 678, 678, 1486
MfeI CAATTG 3 cut(s) 1347, 1410, 1449
MhlI GDGCHC 1 cut(s) 1519
MlyI GAGTC 3 cut(s) 713, 1001, 1392
MmeI TCCRAC 3 cut(s) 427, 1010, 1411
MseI TTAA 6 cut(s) 11, 999, 1139, 1242, 1296, 1674
MspCI CTTAAG 1 cut(s) 1241
MspI CCGG 5 cut(s) 139, 297, 314, 476, 512
MspR9I CCNGG 4 cut(s) 476, 650, 1485, 1690
MunI CAATTG 3 cut(s) 1347, 1410, 1449
MvaI CCWGG 3 cut(s) 650, 1485, 1690
MwoI GCNNNNNNNGC 2 cut(s) 207, 1710
NciI CCSGG 1 cut(s) 476
NdeII GATC 7 cut(s) 460, 1072, 1152, 1336, 1360, 1590, 1654
NlaIII CATG 4 cut(s) 39, 922, 1016, 1033
NlaIV GGNNCC 6 cut(s) 27, 474, 924, 1236, 1273, 1662
PciSI GCTCTTC 1 cut(s) 200
PkrI GCNGC 4 cut(s) 264, 267, 295, 864
PleI GAGTC 3 cut(s) 713, 1000, 1391
PpsI GAGTC 3 cut(s) 713, 1000, 1391
PpuMI RGGWCCY 2 cut(s) 1214, 1272
Psp5II RGGWCCY 2 cut(s) 1214, 1272
Psp6I CCWGG 3 cut(s) 648, 1483, 1688
PspGI CCWGG 3 cut(s) 648, 1483, 1688
PspN4I GGNNCC 6 cut(s) 27, 474, 924, 1236, 1273, 1662
PspPI GGNCC 8 cut(s) 25, 260, 472, 794, 1087, 1214, 1272, 1566
PspPPI RGGWCCY 2 cut(s) 1214, 1272
RsaI GTAC 2 cut(s) 849, 1197
RsaNI GTAC 2 cut(s) 848, 1196
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 6 cut(s) 11, 999, 1139, 1242, 1296, 1674
SatI GCNGC 4 cut(s) 263, 266, 294, 863
Sau3AI GATC 7 cut(s) 460, 1072, 1152, 1336, 1360, 1590, 1654
Sau96I GGNCC 8 cut(s) 25, 260, 472, 794, 1087, 1214, 1272, 1566
ScaI AGTACT 1 cut(s) 1197
SchI GAGTC 3 cut(s) 713, 1001, 1392
ScrFI CCNGG 4 cut(s) 476, 650, 1485, 1690
SduI GDGCHC 1 cut(s) 1519
SfaNI GCATC 5 cut(s) 620, 743, 948, 1435, 1545
SinI GGWCC 3 cut(s) 1087, 1214, 1272
SmlI CTYRAG 3 cut(s) 192, 1199, 1241
SmoI CTYRAG 3 cut(s) 192, 1199, 1241
SpeI ACTAGT 1 cut(s) 1669
SsiI CCGC 4 cut(s) 263, 266, 294, 1461
SspMI CTAG 4 cut(s) 366, 854, 1670, 1714
StyD4I CCNGG 4 cut(s) 474, 648, 1483, 1688
StyI CCWWGG 2 cut(s) 550, 604
TaaI ACNGT 5 cut(s) 916, 1046, 1062, 1646, 1708
TaiI ACGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 489
TatI WGTACW 2 cut(s) 847, 1195
TauI GCSGC 3 cut(s) 265, 268, 296
Tru1I TTAA 6 cut(s) 11, 999, 1139, 1242, 1296, 1674
Tru9I TTAA 6 cut(s) 11, 999, 1139, 1242, 1296, 1674
TscAI CASTG 4 cut(s) 83, 1051, 1593, 1711
TseI GCWGC 1 cut(s) 862
TspDTI ATGAA 5 cut(s) 113, 445, 1001, 1046, 1655
TspRI CASTG 4 cut(s) 83, 1051, 1593, 1711
Vha464I CTTAAG 1 cut(s) 1241
VpaK11BI GGWCC 3 cut(s) 1087, 1214, 1272
XagI CCTNNNNNAGG 1 cut(s) 653
XapI RAATTY 7 cut(s) 120, 522, 710, 937, 1022, 1373, 1625
XmiI GTMKAC 1 cut(s) 40
XspI CTAG 4 cut(s) 366, 854, 1670, 1714
ZrmI AGTACT 1 cut(s) 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.