Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006495

Physical Location & Seq

Genomic Coordinates Forward (+)

18342451 .. 18344452

Gene Structure 2002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGTTCTTTAGGTGATGAGCTTAGTTTGGGATCGATCTTTGGGAGAGGAGTTTCGATGAATGTTGTGGCGGTTGAGAAAGTTGATGAACATGTTAAGAAGCTTGAAGAAGAGAAGAGAAAGCTCGAAAGTTGTCAACTTGAGCTTCCTCTGTCTTTGCAGATTTTAAACGATGCGATTTTGTATCTGAAGGATAAGAGATGTTCAGAGATGGAGACTCAACCATTGTTGAAAGATTTCATTTCTGTTAATAAACCTATTCAAGGAGAAAGAGGAATAGAATTGCTGAAAAGAGAGGAGCTAATGAGGGAGAAGAAGTTTCAGCAATGGAAAGCTAATGATGATCACACTAGTAAGATCAAGAGCAAGCTTGAGATTAAGAGAAATGAGGAGAAATCTCCTATGTTGTTGATTCCAAAGGTGGAAACTGGTTTAGGCCTCGGTTTAAGTTCGAGTTCGATAAGAAGAAAAGGGATTGTTGCCTCATGTGGCTTTACTTCTAACTCTATGCCACAACCACCAACACCAGCAGTACCACAACAACCAGCATTTCTTAAGCAGCAAGCTTTACGGAAGCAAAGAAGGTGTTGGAATCCAGAGTTGCATCGCCGATTTGTCGATGCATTGCAACAGCTAGGTGGACCGGGAGTGGCAACTCCTAAACAAATTAGAGAACATATGCAAGAAGAAGGCTTAACCAATGATGAAGTCAAGAGTCATTTACAGAAATACAGGTTACACATCAGGAAGCCAAATTCGAATGCGGAGAAACAATCAGCAGTTGTTTTAGGGTTTAACTTGTGGAATTCTTCAGCACAAGATGAAGAAGAGACATGTGAAGGAGGAGAATCATTGAAGAGAAGCAATGCGCAATCAGATTCTCCTCAAGGTCCTTTGCAGTTACCGTCTACAACAACAACAACTGGTGGAGATAGTAGCATGGAAGATGTTGAAGATGCTAAGTCTGAGAGCTTTCAACTGGAGAGATTGAGATCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

333

Amino Acids

37.38

Weight (kDa)

7.64

Isoelectric Point (pI)

64.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHO5_N	PF26575	25 - 65	2.6e-10	HHO5-like, N-terminal domain
Myb_DNA-binding	PF00249	194 - 242	7.4e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49560 AT1G49560
fragaria_vesca	FvH4_2g06880 FvH4_2g06880 FvH4_2g06880
malus_domestica	MD05G1074600.v1.1 MD10G1089300.v1.1
prunus_persica	Prupe.4G176800_v2.0.a1 Prupe.8G116200_v2.0.a1 Prupe.8G116200_v2.0.a1
pyrus_communis	pycom05g06790 pycom10g07280
rosa_chinensis	RchiOBHm_Chr6g0259191
rosa_laevigata	RLG00000014550
rosa_multiflora	Rmu_ssc0000050.1_g000098 Rmu_ssc0000114.1_g000052
rosa_roxburghii	Rroxscaffold_4G00317960 Rroxscaffold_7G00206320 Rroxscaffold_7G00206490
rosa_rugosa	Rorug05G0585500 Rorug05G0585600
rosa_samantha	Rh6AG102500 Rh6BG094800 Rh6CG091900 Rh6DG085900
rosa_wichuraiana	Rw6G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	870
AccI	GTMKAC	1 cut(s)	908
AciI	CCGC	2 cut(s)	71, 764
AclWI	GGATC	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	754, 805
AcuI	CTGAAG	2 cut(s)	209, 795
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	1 cut(s)	263
AflII	CTTAAG	1 cut(s)	554
AflIII	ACRYGT	2 cut(s)	91, 833
AgsI	TTSAA	6 cut(s)	107, 232, 263, 856, 953, 977
AhlI	ACTAGT	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	209, 824
AlwI	GGATC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	1 cut(s)	559
ApoI	RAATTY	2 cut(s)	754, 805
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	871
AspS9I	GGNCC	2 cut(s)	641, 890
AsuC2I	CCSGG	1 cut(s)	645
AsuHPI	GGTGA	2 cut(s)	26, 987
AsuII	TTCGAA	1 cut(s)	758
AvaII	GGWCC	2 cut(s)	641, 890
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	2 cut(s)	209, 824
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	2 cut(s)	351, 635
BfrI	CTTAAG	1 cut(s)	554
BisI	GCNGC	1 cut(s)	560
BlsI	GCNGC	1 cut(s)	561
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	2 cut(s)	641, 890
BmgT120I	GGNCC	2 cut(s)	641, 890
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	4 cut(s)	163, 610, 613, 946
BpmI	CTGGAG	1 cut(s)	1001
Bpu14I	TTCGAA	1 cut(s)	758
BpuEI	CTTGAG	3 cut(s)	161, 392, 870
BpuMI	CCSGG	1 cut(s)	645
Bsa29I	ATCGAT	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	991
BsaJI	CCNNGG	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	3 cut(s)	433, 928, 984
Bse3DI	GCAATG	3 cut(s)	332, 623, 871
Bse8I	GATNNNNATC	1 cut(s)	991
BseCI	ATCGAT	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	439
BseJI	GATNNNNATC	1 cut(s)	991
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	3 cut(s)	332, 623, 871
BseMII	CTCAG	1 cut(s)	957
BseNI	ACTGG	3 cut(s)	433, 928, 984
BseRI	GAGGAG	5 cut(s)	63, 311, 404, 858, 873
BseXI	GCAGC	1 cut(s)	571
BshFI	GGCC	1 cut(s)	438
BshVI	ATCGAT	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	209, 824
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	758
Bsp143I	GATC	5 cut(s)	32, 36, 343, 357, 992
BspACI	CCGC	2 cut(s)	71, 764
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	1 cut(s)	958
BspDI	ATCGAT	1 cut(s)	35
BspPI	GGATC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	758
BspTI	CTTAAG	1 cut(s)	554
BsrDI	GCAATG	3 cut(s)	332, 623, 871
BsrI	ACTGG	3 cut(s)	433, 928, 984
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	5 cut(s)	32, 36, 343, 357, 992
Bst4CI	ACNGT	1 cut(s)	906
Bst6I	CTCTTC	4 cut(s)	105, 110, 822, 851
BstAFI	CTTAAG	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	368, 564
BstDEI	CTNAG	3 cut(s)	23, 960, 966
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	871
BstKTI	GATC	5 cut(s)	35, 39, 346, 360, 995
BstMAI	GTCTC	2 cut(s)	209, 824
BstMBI	GATC	5 cut(s)	32, 36, 343, 357, 992
BstNSI	RCATGY	2 cut(s)	95, 837
BstSCI	CCNGG	1 cut(s)	643
BstV1I	GCAGC	1 cut(s)	571
Bsu15I	ATCGAT	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	438
BsuTUI	ATCGAT	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	590
Cac8I	GCNNGC	2 cut(s)	368, 564
CfoI	GCGC	1 cut(s)	871
Cfr13I	GGNCC	2 cut(s)	641, 890
ClaI	ATCGAT	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	4 cut(s)	92, 486, 834, 940
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	3 cut(s)	23, 960, 966
DpnI	GATC	5 cut(s)	34, 38, 345, 359, 994
DpnII	GATC	5 cut(s)	32, 36, 343, 357, 992
DraI	TTTAAA	1 cut(s)	168
Eam1104I	CTCTTC	4 cut(s)	105, 110, 822, 851
EarI	CTCTTC	4 cut(s)	105, 110, 822, 851
Eco147I	AGGCCT	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	641, 890
Eco57I	CTGAAG	2 cut(s)	209, 795
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	890
EcoRI	GAATTC	1 cut(s)	805
EcoT22I	ATGCAT	1 cut(s)	625
FaeI	CATG	4 cut(s)	95, 489, 837, 943
FaiI	YATR	9 cut(s)	93, 404, 487, 509, 678, 680, 835, 941, 1000
FatI	CATG	4 cut(s)	91, 485, 833, 939
FauNDI	CATATG	1 cut(s)	678
FbaI	TGATCA	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	908
Fnu4HI	GCNGC	1 cut(s)	560
Fsp4HI	GCNGC	1 cut(s)	560
FspBI	CTAG	2 cut(s)	351, 635
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	1 cut(s)	870
GluI	GCNGC	1 cut(s)	560
GsuI	CTGGAG	1 cut(s)	1001
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	1 cut(s)	644
HhaI	GCGC	1 cut(s)	871
Hin1II	CATG	4 cut(s)	95, 489, 837, 943
Hin6I	GCGC	1 cut(s)	869
HinP1I	GCGC	1 cut(s)	869
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HindIII	AAGCTT	3 cut(s)	101, 368, 564
HinfI	GANTC	6 cut(s)	217, 412, 592, 715, 848, 878
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	2 cut(s)	26, 987
Hpy166II	GTNNAC	3 cut(s)	137, 641, 909
Hpy188I	TCNGA	4 cut(s)	189, 208, 877, 967
Hpy188III	TCNNGA	4 cut(s)	361, 596, 712, 745
Hpy8I	GTNNAC	3 cut(s)	137, 641, 909
HpyAV	CCTTC	4 cut(s)	184, 576, 683, 833
HpyCH4III	ACNGT	1 cut(s)	906
HpyCH4V	TGCA	6 cut(s)	160, 604, 623, 628, 682, 898
HpyF3I	CTNAG	3 cut(s)	23, 960, 966
Hsp92II	CATG	4 cut(s)	95, 489, 837, 943
HspAI	GCGC	1 cut(s)	869
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	5 cut(s)	32, 36, 343, 357, 992
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	9 cut(s)	414, 540, 558, 609, 657, 718, 730, 909, 965
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	4 cut(s)	163, 610, 613, 946
MaeI	CTAG	2 cut(s)	351, 635
MaeIII	GTNAC	2 cut(s)	735, 900
MalI	GATC	5 cut(s)	34, 38, 345, 359, 994
MboI	GATC	5 cut(s)	32, 36, 343, 357, 992
MluCI	AATT	4 cut(s)	281, 666, 754, 805
MlyI	GAGTC	2 cut(s)	211, 724
MmeI	TCCRAC	1 cut(s)	569
Mph1103I	ATGCAT	1 cut(s)	625
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	8 cut(s)	96, 167, 249, 378, 446, 555, 695, 795
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	1 cut(s)	645
Mva1269I	GAATGC	1 cut(s)	766
NciI	CCSGG	1 cut(s)	645
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	5 cut(s)	32, 36, 343, 357, 992
NlaIII	CATG	4 cut(s)	95, 489, 837, 943
NsbI	TGCGCA	1 cut(s)	870
NsiI	ATGCAT	1 cut(s)	625
NspI	RCATGY	2 cut(s)	95, 837
NspV	TTCGAA	1 cut(s)	758
PceI	AGGCCT	1 cut(s)	438
PciI	ACATGT	2 cut(s)	91, 833
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	4 cut(s)	412, 592, 848, 878
PkrI	GCNGC	1 cut(s)	561
PleI	GAGTC	2 cut(s)	211, 723
PpsI	GAGTC	2 cut(s)	211, 723
PpuMI	RGGWCCY	1 cut(s)	890
PscI	ACATGT	2 cut(s)	91, 833
Psp5II	RGGWCCY	1 cut(s)	890
PspPI	GGNCC	2 cut(s)	641, 890
PspPPI	RGGWCCY	1 cut(s)	890
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
SaqAI	TTAA	8 cut(s)	96, 167, 249, 378, 446, 555, 695, 795
SatI	GCNGC	1 cut(s)	560
Sau3AI	GATC	5 cut(s)	32, 36, 343, 357, 992
Sau96I	GGNCC	2 cut(s)	641, 890
SchI	GAGTC	2 cut(s)	211, 724
ScrFI	CCNGG	1 cut(s)	645
SfaNI	GCATC	4 cut(s)	163, 610, 613, 946
SfuI	TTCGAA	1 cut(s)	758
SinI	GGWCC	2 cut(s)	641, 890
SmlI	CTYRAG	4 cut(s)	140, 371, 554, 885
SmoI	CTYRAG	4 cut(s)	140, 371, 554, 885
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	4 cut(s)	281, 666, 754, 805
SseBI	AGGCCT	1 cut(s)	438
SsiI	CCGC	2 cut(s)	71, 764
SspMI	CTAG	2 cut(s)	351, 635
StuI	AGGCCT	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	643
TaaI	ACNGT	1 cut(s)	906
TaqI	TCGA	7 cut(s)	35, 56, 126, 452, 458, 618, 758
TasI	AATT	4 cut(s)	281, 666, 754, 805
TfiI	GAWTC	4 cut(s)	412, 592, 848, 878
Tru1I	TTAA	8 cut(s)	96, 167, 249, 378, 446, 555, 695, 795
Tru9I	TTAA	8 cut(s)	96, 167, 249, 378, 446, 555, 695, 795
TseI	GCWGC	1 cut(s)	559
TspDTI	ATGAA	5 cut(s)	74, 102, 229, 720, 837
TspGWI	ACGGA	1 cut(s)	586
Vha464I	CTTAAG	1 cut(s)	554
VpaK11BI	GGWCC	2 cut(s)	641, 890
XagI	CCTNNNNNAGG	1 cut(s)	261
XapI	RAATTY	2 cut(s)	754, 805
XceI	RCATGY	2 cut(s)	95, 837
XmiI	GTMKAC	1 cut(s)	908
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	2 cut(s)	351, 635
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.