Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0006495

Physical Location & Seq

Genomic Coordinates Forward (+)

266794 .. 268349

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000114.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgggttcgattcatcttgaactgagcttggattttagacccattttggttccaaaaacgatcaatgatttcctcaaagaggtttctttgattggaaatgtgaccgagaggctttcaaagcttgacgattttgtcaagcgattggaggaggagatcaggaagatcgacaccttcaatcacgagcttcctctttgcatgttccttttgaatgatggtacagatgatgcaactgtggcctccattccctcgaagaagcataagcagaagcataaaatcaccaggctctccgaccttcaaacctccagaacccacatcaacaacctcccttcttccatacccaatcactccctcccaggacgacgaccccgagttcatataccgtacttggctctggtccaagttcgacgagctcgtcgagtccctcatccagctcctccttttgctggaatccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

151

Amino Acids

17.26

Weight (kDa)

10.07

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49560 AT1G49560
fragaria_vesca	FvH4_2g06880 FvH4_2g06880 FvH4_2g06880
malus_domestica	MD05G1074600.v1.1 MD10G1089300.v1.1
prunus_persica	Prupe.4G176800_v2.0.a1 Prupe.8G116200_v2.0.a1 Prupe.8G116200_v2.0.a1
pyrus_communis	pycom05g06790 pycom10g07280
rosa_chinensis	RchiOBHm_Chr6g0259191
rosa_laevigata	RLG00000014550
rosa_multiflora	Rmu_ssc0000050.1_g000098 Rmu_ssc0000114.1_g000052
rosa_roxburghii	Rroxscaffold_4G00317960 Rroxscaffold_7G00206320 Rroxscaffold_7G00206490
rosa_rugosa	Rorug05G0585500 Rorug05G0585600
rosa_samantha	Rh6AG102500 Rh6BG094800 Rh6CG091900 Rh6DG085900
rosa_wichuraiana	Rw6G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	131, 411
AfaI	GTAC	2 cut(s)	217, 383
AfiI	CCNNNNNNNGG	2 cut(s)	79, 443
AgsI	TTSAA	5 cut(s)	20, 117, 175, 208, 296
AjnI	CCWGG	2 cut(s)	278, 352
AluBI	AGCT	5 cut(s)	27, 121, 184, 410, 431
AluI	AGCT	5 cut(s)	27, 121, 184, 410, 431
Alw21I	GWGCWC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	412
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	2 cut(s)	280, 354
Bme1390I	CCNGG	2 cut(s)	280, 354
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	280, 354
BmsI	GCATC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 443
BseBI	CCWGG	2 cut(s)	280, 354
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	2 cut(s)	79, 443
BseMII	CTCAG	1 cut(s)	14
BseRI	GAGGAG	3 cut(s)	161, 164, 423
BshFI	GGCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	2 cut(s)	79, 443
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	3 cut(s)	60, 153, 162
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	3 cut(s)	60, 153, 162
BssSI	CACGAG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	2 cut(s)	280, 354
Bst4CI	ACNGT	2 cut(s)	232, 381
BstDEI	CTNAG	1 cut(s)	23
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	3 cut(s)	63, 156, 165
BstMBI	GATC	3 cut(s)	60, 153, 162
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 233
BstNI	CCWGG	2 cut(s)	280, 354
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	278, 352
BsuRI	GGCC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	216, 382
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	9 cut(s)	27, 112, 121, 184, 236, 283, 389, 410, 431
CviKI_1	RGCY	9 cut(s)	27, 112, 121, 184, 236, 283, 389, 410, 431
CviQI	GTAC	2 cut(s)	216, 382
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	3 cut(s)	62, 155, 164
DpnII	GATC	3 cut(s)	60, 153, 162
DrdI	GACNNNNNNGTC	2 cut(s)	131, 411
DseDI	GACNNNNNNGTC	2 cut(s)	131, 411
Ecl136II	GAGCTC	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	410
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	278, 352
EcoT38I	GRGCYC	1 cut(s)	412
FaeI	CATG	1 cut(s)	199
FaiI	YATR	6 cut(s)	197, 258, 270, 335, 375, 377
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	1 cut(s)	195
FokI	GGATG	1 cut(s)	411
FriOI	GRGCYC	1 cut(s)	412
GsuI	CTGGAG	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	3 cut(s)	10, 417, 447
HphI	GGTGA	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	289, 452
Hpy188III	TCNNGA	4 cut(s)	17, 157, 179, 303
Hpy99I	CGWCG	3 cut(s)	363, 408, 417
HpyAV	CCTTC	3 cut(s)	181, 302, 336
HpyCH4III	ACNGT	2 cut(s)	232, 381
HpyCH4V	TGCA	2 cut(s)	195, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 233
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	60, 153, 162
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	9 cut(s)	142, 265, 292, 316, 339, 366, 377, 429, 441
LweI	GCATC	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	62, 155, 164
MboI	GATC	3 cut(s)	60, 153, 162
MboII	GAAGA	3 cut(s)	172, 262, 321
MhlI	GDGCHC	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	426
MmeI	TCCRAC	1 cut(s)	312
MspR9I	CCNGG	2 cut(s)	280, 354
MvaI	CCWGG	2 cut(s)	280, 354
MwoI	GCNNNNNNNGC	2 cut(s)	118, 233
NdeII	GATC	3 cut(s)	60, 153, 162
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	3 cut(s)	364, 409, 412
PfeI	GAWTC	2 cut(s)	10, 447
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	278, 352
PspGI	CCWGG	2 cut(s)	278, 352
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	394
RsaI	GTAC	2 cut(s)	217, 383
RsaNI	GTAC	2 cut(s)	216, 382
SacI	GAGCTC	1 cut(s)	412
Sau3AI	GATC	3 cut(s)	60, 153, 162
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	2 cut(s)	280, 354
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	394
SstI	GAGCTC	1 cut(s)	412
StyD4I	CCNGG	2 cut(s)	278, 352
TaaI	ACNGT	2 cut(s)	232, 381
TaqI	TCGA	5 cut(s)	8, 165, 248, 403, 415
TaqII	GACCGA	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	10, 447
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	77
XceI	RCATGY	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.