Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006495

Physical Location & Seq

Genomic Coordinates Reverse (-)

5677795 .. 5681412

Gene Structure 3618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGGTTCGGTTCCTCCTGAACTGAGCTTGGATTTCAGACCCAGTTTTGTTCCGAAAACGATCACTGATTTCCTCAAGGAGGTTTCTTTGATCGGAAATGTGACGGAGAGGCTGTCAAAGCTTGACAATTTCGTCAAGCGTTTGGAGGAGGAGATGAGGAAGATCGACGCCTTCAAGCGCGAGCTTCCTCTCTGCATGTTCCTCTTGAATGATGCGATTCAAGCTCTGAAGGAAGATGCAATGCAATGTGCTAAGCCAAATGTTCAACCAGTGTTGGAAGAATTCATACCATTGAAGAAAGATTGTGATAAAAAGACGGGAGAACCCAATAACCATAAGAAAGAAAAAGACTCTAGGGATAAGAAGAATTGGATGAGCTCTGTTCAGCTTTGGAACACCGATAATTATCATCATCCAACTAGTGATTTCCCTTGTGATCGAAAACAAGGTTCTGACATTGATTCTAAGAGAAATGAAGCCAGAAATGGGGTTGCAAATGAGGATCCATTTCAGACATGTAGAGATAGGAATGGTGGAAGAGCGTTTGTGCCATTCAAGGCATACCCTGCGTTTTCTGTCCCAGCTGTGAAGGAAGATAAGGAGGATTTGGCAGTTCATGGGTTGTCTCTGCTCACCCCTGGAATCAAGAATCCAAAGGAAGAATCAGCTTCTAGTGGTTCAAGATCCACTTGTGGAAGGGCAGTCTCCTTCTCTGCTGCCAATGTTCAATCCAATATGAGGATTTCGCCGCAGCAGCCAACTTCCCGGAAACAGAGAAGGTGCTGGTCGCCAGAGTTGCATCGGAGGTTTGTCAATGCTTTGCAGCAACTTGGAGGTTCACAAGTTGCCACTCCGAAACAAATTAGAGAACTTATGCAGGTCGATGGCCTGACGAATGATGAAGTGAAGAGTCACTTGCAGAAATATCGACTTCATACAAGAAGAGTTCCAGCTGCCAAGTCTGCCCCTGCCAATCAATCTGTTGTTGTTTTGGGGGATTTGTGGACGTCCCCAGATCAATATGATCACTCCTCAAAGGCTAATAGTTCTCAGTCTGGTTCACCCCAAGGCCCTCTCCAGTTAGCTGAAAATGGTGGTGATGATGAAGATAGTGATGAGGATGATGCAAAATCTGAAAGTTATAGCTGGAAAGGTCACATCCACAAACCTGGAAAAGATGATGTCATGGAAGAAACAATGCCATTTCTCCTACATCTCAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

409

Amino Acids

45.8

Weight (kDa)

7.16

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHO5_N	PF26575	9 - 81	1.4e-32	HHO5-like, N-terminal domain
Myb_DNA-binding	PF00249	259 - 310	1.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49560 AT1G49560
fragaria_vesca	FvH4_2g06880 FvH4_2g06880 FvH4_2g06880
malus_domestica	MD05G1074600.v1.1 MD10G1089300.v1.1
prunus_persica	Prupe.4G176800_v2.0.a1 Prupe.8G116200_v2.0.a1 Prupe.8G116200_v2.0.a1
pyrus_communis	pycom05g06790 pycom10g07280
rosa_chinensis	RchiOBHm_Chr6g0259191
rosa_laevigata	RLG00000014550
rosa_multiflora	Rmu_ssc0000050.1_g000098 Rmu_ssc0000114.1_g000052
rosa_roxburghii	Rroxscaffold_4G00317960 Rroxscaffold_7G00206320 Rroxscaffold_7G00206490
rosa_rugosa	Rorug05G0585500 Rorug05G0585600
rosa_samantha	Rh6AG102500 Rh6BG094800 Rh6CG091900 Rh6DG085900
rosa_wichuraiana	Rw6G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	1 cut(s)	1010
Acc36I	ACCTGC	1 cut(s)	868
AccII	CGCG	1 cut(s)	180
AciI	CCGC	1 cut(s)	749
AclWI	GGATC	3 cut(s)	497, 510, 678
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	2 cut(s)	168, 1007
AfiI	CCNNNNNNNGG	3 cut(s)	79, 486, 738
AflIII	ACRYGT	1 cut(s)	515
AgsI	TTSAA	8 cut(s)	175, 208, 221, 266, 295, 556, 681, 728
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	637, 1168
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	2 cut(s)	630, 709
AlwI	GGATC	3 cut(s)	497, 510, 678
AoxI	GGCC	2 cut(s)	886, 1069
ApeKI	GCWGC	5 cut(s)	716, 751, 754, 823, 953
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	1070
AsuC2I	CCSGG	1 cut(s)	766
AsuHPI	GGTGA	3 cut(s)	625, 1053, 1109
BamHI	GGATCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	5 cut(s)	703, 763, 766, 835, 940
BccI	CCATC	1 cut(s)	878
BcgI	CGANNNNNNTGC	2 cut(s)	908, 942
BciT130I	CCWGG	2 cut(s)	639, 1170
BclI	TGATCA	1 cut(s)	1024
BcnI	CCSGG	1 cut(s)	766
BcoDI	GTCTC	2 cut(s)	630, 709
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	3 cut(s)	354, 420, 672
BfuAI	ACCTGC	1 cut(s)	868
BisI	GCNGC	6 cut(s)	717, 749, 752, 755, 824, 954
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	6 cut(s)	718, 750, 753, 756, 825, 955
Bme1390I	CCNGG	3 cut(s)	639, 766, 1170
BmgT120I	GGNCC	1 cut(s)	1070
BmiI	GGNNCC	2 cut(s)	12, 504
BmrFI	CCNGG	3 cut(s)	639, 766, 1170
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	4 cut(s)	202, 226, 808, 1114
BmuI	ACTGGG	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	1061
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	59, 1202
BpuMI	CCSGG	1 cut(s)	766
BsaBI	GATNNNNATC	1 cut(s)	405
BsaHI	GRCGYC	2 cut(s)	168, 1007
BsaJI	CCNNGG	2 cut(s)	637, 1066
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 486, 738
Bse1I	ACTGG	3 cut(s)	42, 269, 1078
Bse3DI	GCAATG	2 cut(s)	246, 251
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	639, 1170
BseDI	CCNNGG	2 cut(s)	637, 1066
BseGI	GGATG	4 cut(s)	378, 412, 1126, 1158
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	79, 486, 738
BseMI	GCAATG	2 cut(s)	246, 251
BseMII	CTCAG	2 cut(s)	14, 1064
BseNI	ACTGG	3 cut(s)	42, 269, 1078
BseRI	GAGGAG	3 cut(s)	161, 164, 1021
BseXI	GCAGC	5 cut(s)	703, 763, 766, 835, 940
BseYI	CCCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	888, 1071
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	766
BslFI	GGGAC	2 cut(s)	563, 994
BslI	CCNNNNNNNGG	3 cut(s)	79, 486, 738
BsmAI	GTCTC	2 cut(s)	630, 709
BsmFI	GGGAC	2 cut(s)	563, 994
BsnI	GGCC	2 cut(s)	888, 1071
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	8 cut(s)	60, 90, 162, 436, 502, 683, 1015, 1024
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	749
BspANI	GGCC	2 cut(s)	888, 1071
BspCNI	CTCAG	2 cut(s)	15, 1063
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	12, 504
BspMI	ACCTGC	1 cut(s)	868
BspPI	GGATC	3 cut(s)	497, 510, 678
BspQI	GCTCTTC	1 cut(s)	532
BsrDI	GCAATG	2 cut(s)	246, 251
BsrI	ACTGG	3 cut(s)	42, 269, 1078
BssECI	CCNNGG	2 cut(s)	637, 1066
BssMI	GATC	8 cut(s)	60, 90, 162, 436, 502, 683, 1015, 1024
BssNI	GRCGYC	2 cut(s)	168, 1007
BssT1I	CCWWGG	1 cut(s)	1066
Bst2UI	CCWGG	2 cut(s)	639, 1170
Bst6I	CTCTTC	3 cut(s)	532, 902, 937
BstACI	GRCGYC	2 cut(s)	168, 1007
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	4 cut(s)	23, 252, 465, 1050
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	4 cut(s)	378, 412, 1126, 1158
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	8 cut(s)	63, 93, 165, 439, 505, 686, 1018, 1027
BstMAI	GTCTC	2 cut(s)	630, 709
BstMBI	GATC	8 cut(s)	60, 90, 162, 436, 502, 683, 1015, 1024
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 221, 566, 754, 796, 962
BstNI	CCWGG	2 cut(s)	639, 1170
BstNSI	RCATGY	2 cut(s)	199, 519
BstSCI	CCNGG	3 cut(s)	637, 764, 1168
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	5 cut(s)	703, 763, 766, 835, 940
BstX2I	RGATCY	2 cut(s)	502, 683
BstXI	CCANNNNNNTGG	1 cut(s)	1169
BstYI	RGATCY	2 cut(s)	502, 683
BsuRI	GGCC	2 cut(s)	888, 1071
BtsCI	GGATG	4 cut(s)	378, 412, 1126, 1158
BtsIMutI	CAGTG	2 cut(s)	63, 276
BveI	ACCTGC	1 cut(s)	868
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	1070
CseI	GACGC	1 cut(s)	176
CviAII	CATG	4 cut(s)	196, 516, 617, 1186
DdeI	CTNAG	4 cut(s)	23, 252, 465, 1050
DpnI	GATC	8 cut(s)	62, 92, 164, 438, 504, 685, 1017, 1026
DpnII	GATC	8 cut(s)	60, 90, 162, 436, 502, 683, 1015, 1024
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	3 cut(s)	532, 902, 937
EarI	CTCTTC	3 cut(s)	532, 902, 937
Ecl136II	GAGCTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	1066
Eco24I	GRGCYC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	1070
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	637, 1168
EcoT14I	CCWWGG	1 cut(s)	1066
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	1066
FaeI	CATG	4 cut(s)	199, 519, 620, 1189
FalI	AAGNNNNNCTT	4 cut(s)	673, 705, 899, 931
FaqI	GGGAC	2 cut(s)	563, 994
FatI	CATG	4 cut(s)	195, 515, 616, 1185
FbaI	TGATCA	1 cut(s)	1024
Fnu4HI	GCNGC	6 cut(s)	717, 749, 752, 755, 824, 954
FokI	GGATG	4 cut(s)	385, 399, 1133, 1145
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	6 cut(s)	717, 749, 752, 755, 824, 954
FspBI	CTAG	3 cut(s)	354, 420, 672
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	6 cut(s)	717, 749, 752, 755, 824, 954
GsaI	CCCAGC	1 cut(s)	584
GsuI	CTGGAG	1 cut(s)	1061
HaeIII	GGCC	2 cut(s)	888, 1071
HapII	CCGG	1 cut(s)	766
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	2 cut(s)	168, 1007
Hin1II	CATG	4 cut(s)	199, 519, 620, 1189
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	7 cut(s)	217, 350, 461, 642, 649, 662, 910
HpaII	CCGG	1 cut(s)	766
HphI	GGTGA	3 cut(s)	625, 1053, 1109
Hpy166II	GTNNAC	3 cut(s)	839, 1005, 1061
Hpy188I	TCNGA	9 cut(s)	38, 54, 95, 228, 454, 513, 804, 855, 1135
Hpy188III	TCNNGA	4 cut(s)	17, 205, 646, 681
Hpy8I	GTNNAC	3 cut(s)	839, 1005, 1061
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	6 cut(s)	181, 223, 583, 690, 718, 771
HpyCH4IV	ACGT	1 cut(s)	1007
HpyCH4V	TGCA	9 cut(s)	195, 239, 244, 494, 799, 823, 877, 919, 1127
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 221, 566, 754, 796, 962
HpyF3I	CTNAG	4 cut(s)	23, 252, 465, 1050
HpySE526I	ACGT	1 cut(s)	1007
Hsp92I	GRCGYC	2 cut(s)	168, 1007
Hsp92II	CATG	4 cut(s)	199, 519, 620, 1189
HspAI	GCGC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	1024
Kzo9I	GATC	8 cut(s)	60, 90, 162, 436, 502, 683, 1015, 1024
LguI	GCTCTTC	1 cut(s)	532
Lsp1109I	GCAGC	5 cut(s)	703, 763, 766, 835, 940
LweI	GCATC	4 cut(s)	202, 226, 808, 1114
MaeI	CTAG	3 cut(s)	354, 420, 672
MaeII	ACGT	1 cut(s)	1007
MaeIII	GTNAC	3 cut(s)	100, 911, 1154
MalI	GATC	8 cut(s)	62, 92, 164, 438, 504, 685, 1017, 1026
MboI	GATC	8 cut(s)	60, 90, 162, 436, 502, 683, 1015, 1024
MflI	RGATCY	2 cut(s)	502, 683
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	5 cut(s)	127, 281, 367, 403, 861
MlyI	GAGTC	2 cut(s)	344, 919
MmeI	TCCRAC	2 cut(s)	255, 440
MspA1I	CMGCKG	2 cut(s)	584, 953
MspI	CCGG	1 cut(s)	766
MspR9I	CCNGG	3 cut(s)	639, 766, 1170
MvaI	CCWGG	2 cut(s)	639, 1170
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	6 cut(s)	118, 221, 566, 754, 796, 962
NciI	CCSGG	1 cut(s)	766
NdeII	GATC	8 cut(s)	60, 90, 162, 436, 502, 683, 1015, 1024
NlaIII	CATG	4 cut(s)	199, 519, 620, 1189
NlaIV	GGNNCC	2 cut(s)	12, 504
NmuCI	GTSAC	3 cut(s)	100, 911, 1154
NspI	RCATGY	2 cut(s)	199, 519
PciI	ACATGT	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	532
PfeI	GAWTC	5 cut(s)	217, 461, 642, 649, 662
PfoI	TCCNGGA	1 cut(s)	764
PkrI	GCNGC	6 cut(s)	718, 750, 753, 756, 825, 955
PleI	GAGTC	2 cut(s)	344, 918
PpsI	GAGTC	2 cut(s)	344, 918
PscI	ACATGT	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	637, 1168
PspFI	CCCAGC	1 cut(s)	580
PspGI	CCWGG	2 cut(s)	637, 1168
PspN4I	GGNNCC	2 cut(s)	12, 504
PspPI	GGNCC	1 cut(s)	1070
PsuI	RGATCY	2 cut(s)	502, 683
PvuII	CAGCTG	2 cut(s)	584, 953
SacI	GAGCTC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	532
SatI	GCNGC	6 cut(s)	717, 749, 752, 755, 824, 954
Sau3AI	GATC	8 cut(s)	60, 90, 162, 436, 502, 683, 1015, 1024
Sau96I	GGNCC	1 cut(s)	1070
SchI	GAGTC	2 cut(s)	344, 919
ScrFI	CCNGG	3 cut(s)	639, 766, 1170
SduI	GDGCHC	1 cut(s)	380
SfaNI	GCATC	4 cut(s)	202, 226, 808, 1114
SmlI	CTYRAG	2 cut(s)	74, 1217
SmoI	CTYRAG	2 cut(s)	74, 1217
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	5 cut(s)	127, 281, 367, 403, 861
SsiI	CCGC	1 cut(s)	749
SspMI	CTAG	3 cut(s)	354, 420, 672
SstI	GAGCTC	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	637, 764, 1168
StyI	CCWWGG	1 cut(s)	1066
TaiI	ACGT	1 cut(s)	1010
TaqI	TCGA	4 cut(s)	165, 439, 882, 928
TasI	AATT	5 cut(s)	127, 281, 367, 403, 861
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	5 cut(s)	217, 461, 642, 649, 662
TscAI	CASTG	2 cut(s)	70, 276
TseFI	GTSAC	3 cut(s)	100, 911, 1154
TseI	GCWGC	5 cut(s)	716, 751, 754, 823, 953
Tsp45I	GTSAC	3 cut(s)	100, 911, 1154
TspDTI	ATGAA	6 cut(s)	274, 489, 605, 915, 923, 1119
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	70, 276
XagI	CCTNNNNNAGG	1 cut(s)	77
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	2 cut(s)	199, 519
XspI	CTAG	3 cut(s)	354, 420, 672
ZraI	GACGTC	1 cut(s)	1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.