Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006495

Physical Location & Seq

Genomic Coordinates Reverse (-)

14964000 .. 14967121

Gene Structure 3122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGTTCGGTTCCTCCTGAACTGAGCTTGGATTTTAGACCCTCTTTCGTTCCGAAGACGATCACTGATTTCCTCAAGGAGGTTTCTTTGATCGGAAATGTGACCGAGAGGCTCTCAAAGCTTGACGATTTCGTCAAGCGATTGGAGGAGGAGATGAGGAAGATCGACGCCTTCAAGCGCGAGCTTCCTCTCTGCATGTTCCTCTTGAATGATGCAATTCAAGCTCTGAAGGAAGATGCAATGCAATGTGCGAAGCCAAATGTTCAACCAGTGTTGGAAGAATTCATACCATTGAAGAAAGATTGTGATAAAAACACCGGAGAACCCAATAACCATAAGAAAGAAAAAGACTCTAGGGATAAGAAGAATTGGATGAGCTCTGTTCAGCTTTGGAACACTGATAATAATCATCATCCTCCAACTAGTGATTTCCCTTGTGATCGAAAGCAAGGTTCCGAAATTGATTCTAAGAGAAATGAAACCAGAAATGGGAGAGCAAATGAGGATCCATTTCAGACATGTAGAGATAGGAATGGTGGAAGAGCATTCGTGCCATTCAAGGCATACCCTGCTTTTCCTGTCACAGCTGTGAGGAAGGAAGATAAAGAGGATTTGGCAGTTCATGGGTTGTCTTTGCTCACTCCCGGAATTAAGAATCCAAAGGAAGAATCAGCTTCTAGTGGTTCAAGATCCACTTGTGGAAGGGCAGTCTCCTTCTCTGCTGCCAATGTTCAATCCCATATGAGGATTTCGCCACAGCAGCCAACTTCCCGGAAACAGAGAAGGTGCTGGTCGCCGGAGTTGCATCGGAGGTTTGTCAGTGCTTTGCAGCAACTTGGAGGTTCACAAGTTGCCACACCGAAACAAATTAGAGAACTTATGCAGGTTGATGGCCTGACGAATGATGAAGTGAAGAGTCACTTGCAGAAATACCGACTTCATACAAGAAGAGTTCCAGCTGCCAAGTCTGCCCCTGCCAATCAATCTGTAGTTGTTTTGGGGGATTTGTGGATGTCCCAAGATCAATATGATGATTCTTCAAAGGCTAATAGTTCTCAGTCTGGCTCACCCCAAGGCCCTCTCCAGTTAGCTGAAAATGGTGGTAATGATGAAGAAGACAGTGATGATGATGATGATGCAAAATCTGAAAGTTATAGCTGGAAAGGGCACATCCACAAACCTGGAAAAAATGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

399

Amino Acids

44.82

Weight (kDa)

7.14

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHO5_N	PF26575	9 - 81	2.5e-33	HHO5-like, N-terminal domain
Myb_DNA-binding	PF00249	261 - 312	1.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49560 AT1G49560
fragaria_vesca	FvH4_2g06880 FvH4_2g06880 FvH4_2g06880
malus_domestica	MD05G1074600.v1.1 MD10G1089300.v1.1
prunus_persica	Prupe.4G176800_v2.0.a1 Prupe.8G116200_v2.0.a1 Prupe.8G116200_v2.0.a1
pyrus_communis	pycom05g06790 pycom10g07280
rosa_chinensis	RchiOBHm_Chr6g0259191
rosa_laevigata	RLG00000014550
rosa_multiflora	Rmu_ssc0000050.1_g000098 Rmu_ssc0000114.1_g000052
rosa_roxburghii	Rroxscaffold_4G00317960 Rroxscaffold_7G00206320 Rroxscaffold_7G00206490
rosa_rugosa	Rorug05G0585500 Rorug05G0585600
rosa_samantha	Rh6AG102500 Rh6BG094800 Rh6CG091900 Rh6DG085900
rosa_wichuraiana	Rw6G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	874
AccII	CGCG	1 cut(s)	180
AclWI	GGATC	3 cut(s)	500, 513, 684
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	3 cut(s)	79, 489, 744
AflIII	ACRYGT	1 cut(s)	518
AgsI	TTSAA	9 cut(s)	175, 208, 221, 266, 295, 559, 687, 734, 1041
AhlI	ACTAGT	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	1180
AleI	CACNNNNGTG	1 cut(s)	587
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	715
AlwI	GGATC	3 cut(s)	500, 513, 684
AoxI	GGCC	2 cut(s)	892, 1075
ApeKI	GCWGC	4 cut(s)	722, 760, 829, 959
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	1076
AsuC2I	CCSGG	2 cut(s)	645, 772
AsuHPI	GGTGA	1 cut(s)	1059
BaeGI	GKGCMC	1 cut(s)	1170
BamHI	GGATCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
BbsI	GAAGAC	2 cut(s)	62, 1122
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	4 cut(s)	709, 772, 841, 946
BccI	CCATC	1 cut(s)	884
BciT130I	CCWGG	1 cut(s)	1182
BcnI	CCSGG	2 cut(s)	645, 772
BcoDI	GTCTC	1 cut(s)	715
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	3 cut(s)	354, 423, 678
BfmI	CTRYAG	1 cut(s)	987
BfuAI	ACCTGC	1 cut(s)	874
BisI	GCNGC	4 cut(s)	723, 761, 830, 960
BlsI	GCNGC	4 cut(s)	724, 762, 831, 961
Bme1390I	CCNGG	3 cut(s)	645, 772, 1182
BmgT120I	GGNCC	1 cut(s)	1076
BmiI	GGNNCC	3 cut(s)	12, 454, 507
BmrFI	CCNGG	3 cut(s)	645, 772, 1182
BmsI	GCATC	4 cut(s)	202, 226, 814, 1126
BpiI	GAAGAC	2 cut(s)	62, 1122
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	1067
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	2 cut(s)	645, 772
BsaBI	GATNNNNATC	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	1072
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 489, 744
Bse1I	ACTGG	2 cut(s)	269, 1084
Bse3DI	GCAATG	2 cut(s)	246, 251
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	1182
BseDI	CCNNGG	1 cut(s)	1072
BseGI	GGATG	4 cut(s)	378, 412, 1017, 1170
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	79, 489, 744
BseMI	GCAATG	2 cut(s)	246, 251
BseMII	CTCAG	2 cut(s)	14, 1070
BseNI	ACTGG	2 cut(s)	269, 1084
BseRI	GAGGAG	2 cut(s)	161, 164
BseSI	GKGCMC	1 cut(s)	1170
BseXI	GCAGC	4 cut(s)	709, 772, 841, 946
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	894, 1077
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	4 cut(s)	318, 645, 772, 797
BslFI	GGGAC	1 cut(s)	1000
BslI	CCNNNNNNNGG	3 cut(s)	79, 489, 744
BsmAI	GTCTC	1 cut(s)	715
BsmFI	GGGAC	1 cut(s)	1000
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	894, 1077
Bsp1286I	GDGCHC	2 cut(s)	380, 1170
Bsp143I	GATC	7 cut(s)	60, 90, 162, 439, 505, 689, 1021
BspANI	GGCC	2 cut(s)	894, 1077
BspCNI	CTCAG	2 cut(s)	15, 1069
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	12, 454, 507
BspMI	ACCTGC	1 cut(s)	874
BspPI	GGATC	3 cut(s)	500, 513, 684
BspQI	GCTCTTC	1 cut(s)	535
BsrDI	GCAATG	2 cut(s)	246, 251
BsrI	ACTGG	2 cut(s)	269, 1084
BssECI	CCNNGG	1 cut(s)	1072
BssMI	GATC	7 cut(s)	60, 90, 162, 439, 505, 689, 1021
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	1072
Bst2UI	CCWGG	1 cut(s)	1182
Bst4CI	ACNGT	1 cut(s)	1121
Bst6I	CTCTTC	3 cut(s)	535, 908, 943
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	3 cut(s)	23, 468, 1056
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	4 cut(s)	378, 412, 1017, 1170
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	7 cut(s)	63, 93, 165, 442, 508, 692, 1024
BstMAI	GTCTC	1 cut(s)	715
BstMBI	GATC	7 cut(s)	60, 90, 162, 439, 505, 689, 1021
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 221, 569, 760, 802, 968
BstNI	CCWGG	1 cut(s)	1182
BstNSI	RCATGY	2 cut(s)	199, 522
BstSCI	CCNGG	3 cut(s)	643, 770, 1180
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	1 cut(s)	1170
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	709, 772, 841, 946
BstV2I	GAAGAC	2 cut(s)	62, 1122
BstX2I	RGATCY	2 cut(s)	505, 689
BstXI	CCANNNNNNTGG	1 cut(s)	1181
BstYI	RGATCY	2 cut(s)	505, 689
BsuRI	GGCC	2 cut(s)	894, 1077
BtsCI	GGATG	4 cut(s)	378, 412, 1017, 1170
BtsIMutI	CAGTG	5 cut(s)	63, 276, 396, 826, 1126
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	1076
CseI	GACGC	1 cut(s)	176
CviAII	CATG	3 cut(s)	196, 519, 623
DdeI	CTNAG	3 cut(s)	23, 468, 1056
DpnI	GATC	7 cut(s)	62, 92, 164, 441, 507, 691, 1023
DpnII	GATC	7 cut(s)	60, 90, 162, 439, 505, 689, 1021
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	3 cut(s)	535, 908, 943
EarI	CTCTTC	3 cut(s)	535, 908, 943
Ecl136II	GAGCTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	1072
Eco24I	GRGCYC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	1076
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	1180
EcoT14I	CCWWGG	1 cut(s)	1072
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	1072
FaeI	CATG	3 cut(s)	199, 522, 626
FalI	AAGNNNNNCTT	4 cut(s)	679, 711, 905, 937
FaqI	GGGAC	1 cut(s)	1000
FatI	CATG	3 cut(s)	195, 518, 622
FauNDI	CATATG	1 cut(s)	741
Fnu4HI	GCNGC	4 cut(s)	723, 761, 830, 960
FokI	GGATG	4 cut(s)	385, 399, 1024, 1157
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	4 cut(s)	723, 761, 830, 960
FspBI	CTAG	3 cut(s)	354, 423, 678
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	4 cut(s)	723, 761, 830, 960
GsuI	CTGGAG	1 cut(s)	1067
HaeIII	GGCC	2 cut(s)	894, 1077
HapII	CCGG	4 cut(s)	318, 645, 772, 797
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	199, 522, 626
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	6 cut(s)	350, 464, 655, 668, 916, 1034
HpaII	CCGG	4 cut(s)	318, 645, 772, 797
HphI	GGTGA	1 cut(s)	1059
Hpy166II	GTNNAC	1 cut(s)	845
Hpy188I	TCNGA	7 cut(s)	54, 95, 228, 457, 516, 810, 1147
Hpy188III	TCNNGA	3 cut(s)	17, 205, 687
Hpy8I	GTNNAC	1 cut(s)	845
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	6 cut(s)	181, 223, 589, 696, 724, 777
HpyCH4III	ACNGT	1 cut(s)	1121
HpyCH4V	TGCA	9 cut(s)	195, 215, 239, 244, 805, 829, 883, 925, 1139
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 221, 569, 760, 802, 968
HpyF3I	CTNAG	3 cut(s)	23, 468, 1056
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	199, 522, 626
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	7 cut(s)	60, 90, 162, 439, 505, 689, 1021
LguI	GCTCTTC	1 cut(s)	535
Lsp1109I	GCAGC	4 cut(s)	709, 772, 841, 946
LweI	GCATC	4 cut(s)	202, 226, 814, 1126
MaeI	CTAG	3 cut(s)	354, 423, 678
MaeIII	GTNAC	3 cut(s)	100, 580, 917
MalI	GATC	7 cut(s)	62, 92, 164, 441, 507, 691, 1023
MboI	GATC	7 cut(s)	60, 90, 162, 439, 505, 689, 1021
MflI	RGATCY	2 cut(s)	505, 689
MhlI	GDGCHC	2 cut(s)	380, 1170
MluCI	AATT	6 cut(s)	216, 281, 367, 459, 648, 867
MlyI	GAGTC	2 cut(s)	344, 925
MmeI	TCCRAC	2 cut(s)	255, 443
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	2 cut(s)	587, 959
MspI	CCGG	4 cut(s)	318, 645, 772, 797
MspR9I	CCNGG	3 cut(s)	645, 772, 1182
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	1182
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	6 cut(s)	118, 221, 569, 760, 802, 968
NciI	CCSGG	2 cut(s)	645, 772
NdeI	CATATG	1 cut(s)	741
NdeII	GATC	7 cut(s)	60, 90, 162, 439, 505, 689, 1021
NlaIII	CATG	3 cut(s)	199, 522, 626
NlaIV	GGNNCC	3 cut(s)	12, 454, 507
NmuCI	GTSAC	3 cut(s)	100, 580, 917
NspI	RCATGY	2 cut(s)	199, 522
OliI	CACNNNNGTG	1 cut(s)	587
PciI	ACATGT	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	535
PctI	GAATGC	1 cut(s)	545
PfeI	GAWTC	4 cut(s)	464, 655, 668, 1034
PfoI	TCCNGGA	2 cut(s)	643, 770
PkrI	GCNGC	4 cut(s)	724, 762, 831, 961
PleI	GAGTC	2 cut(s)	344, 924
PpsI	GAGTC	2 cut(s)	344, 924
PscI	ACATGT	1 cut(s)	518
Psp124BI	GAGCTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	1180
PspGI	CCWGG	1 cut(s)	1180
PspN4I	GGNNCC	3 cut(s)	12, 454, 507
PspPI	GGNCC	1 cut(s)	1076
PsuI	RGATCY	2 cut(s)	505, 689
PvuII	CAGCTG	2 cut(s)	587, 959
RseI	CAYNNNNRTG	1 cut(s)	587
SacI	GAGCTC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	4 cut(s)	723, 761, 830, 960
Sau3AI	GATC	7 cut(s)	60, 90, 162, 439, 505, 689, 1021
Sau96I	GGNCC	1 cut(s)	1076
SchI	GAGTC	2 cut(s)	344, 925
ScrFI	CCNGG	3 cut(s)	645, 772, 1182
SduI	GDGCHC	2 cut(s)	380, 1170
SfaNI	GCATC	4 cut(s)	202, 226, 814, 1126
SfcI	CTRYAG	1 cut(s)	987
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	6 cut(s)	216, 281, 367, 459, 648, 867
SspMI	CTAG	3 cut(s)	354, 423, 678
SstI	GAGCTC	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	643, 770, 1180
StyI	CCWWGG	1 cut(s)	1072
TaaI	ACNGT	1 cut(s)	1121
TaqI	TCGA	2 cut(s)	165, 442
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	6 cut(s)	216, 281, 367, 459, 648, 867
TfiI	GAWTC	4 cut(s)	464, 655, 668, 1034
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	5 cut(s)	70, 276, 403, 826, 1126
TseFI	GTSAC	3 cut(s)	100, 580, 917
TseI	GCWGC	4 cut(s)	722, 760, 829, 959
Tsp45I	GTSAC	3 cut(s)	100, 580, 917
TspDTI	ATGAA	6 cut(s)	274, 492, 611, 921, 929, 1125
TspRI	CASTG	5 cut(s)	70, 276, 403, 826, 1126
XagI	CCTNNNNNAGG	1 cut(s)	77
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	2 cut(s)	199, 522
XspI	CTAG	3 cut(s)	354, 423, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.