Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006495

Physical Location & Seq

Genomic Coordinates Forward (+)

43631654 .. 43633633

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGTTTGGTTCTTCTTGAACCGAGCTTGGATTTTAGACCCACTTTGGTTCCAAAAACAATCAATGATTTCCACAAGGAGGTTTCTTTGATTGGAAACGTGACCGAGAGGCTTTCAAAGCTTGATGATTTTGTCAAGCGATTGGAGGAGAAGAGAGGAAGATCGGCACCTTCAATCGCGAGCTTCCTCTTTGCATTTTATTTTGTCCGAAACTTGCTCGGAAGCCGCCGCTTCGGAAGCAAAAGAAGGGAAAGTAATGGCGGTGGTTGCGATGAGCTCGGTGAGGAGAAAGGAGATATGGGTTTTGGGTTGGTTGTGAAAGAGGTTTTTGATGGAGGGAAATTGAAGGGGTGGGAGTTGAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

122

Amino Acids

13.68

Weight (kDa)

7.85

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHO5_N	PF26575	9 - 50	2.4e-09	HHO5-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49560 AT1G49560
fragaria_vesca	FvH4_2g06880 FvH4_2g06880 FvH4_2g06880
malus_domestica	MD05G1074600.v1.1 MD10G1089300.v1.1
prunus_persica	Prupe.4G176800_v2.0.a1 Prupe.8G116200_v2.0.a1 Prupe.8G116200_v2.0.a1
pyrus_communis	pycom05g06790 pycom10g07280
rosa_chinensis	RchiOBHm_Chr6g0259191
rosa_laevigata	RLG00000014550
rosa_multiflora	Rmu_ssc0000050.1_g000098 Rmu_ssc0000114.1_g000052
rosa_roxburghii	Rroxscaffold_4G00317960 Rroxscaffold_7G00206320 Rroxscaffold_7G00206490
rosa_rugosa	Rorug05G0585500 Rorug05G0585600
rosa_samantha	Rh6AG102500 Rh6BG094800 Rh6CG091900 Rh6DG085900
rosa_wichuraiana	Rw6G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	1 cut(s)	179
AciI	CCGC	3 cut(s)	226, 229, 261
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	5 cut(s)	20, 117, 174, 346, 361
AluBI	AGCT	4 cut(s)	27, 121, 183, 277
AluI	AGCT	4 cut(s)	27, 121, 183, 277
Alw21I	GWGCWC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	1 cut(s)	326
BisI	GCNGC	2 cut(s)	226, 229
BlsI	GCNGC	2 cut(s)	227, 230
BmiI	GGNNCC	2 cut(s)	51, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseRI	GAGGAG	2 cut(s)	161, 299
Bsh1236I	CGCG	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	161
Bsp68I	TCGCGA	1 cut(s)	179
BspACI	CCGC	3 cut(s)	226, 229, 261
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	51, 168
BspT107I	GGYRCC	1 cut(s)	166
BssMI	GATC	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 237, 267
BstUI	CGCG	1 cut(s)	179
BtgZI	GCGATG	1 cut(s)	285
BtuMI	TCGCGA	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	181
CviJI	RGCY	6 cut(s)	27, 112, 121, 183, 225, 277
CviKI_1	RGCY	6 cut(s)	27, 112, 121, 183, 225, 277
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	279
FaiI	YATR	1 cut(s)	299
Fnu4HI	GCNGC	2 cut(s)	226, 229
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	226, 229
GluI	GCNGC	2 cut(s)	226, 229
HindIII	AAGCTT	1 cut(s)	119
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	209, 221, 236
Hpy188III	TCNNGA	2 cut(s)	17, 178
HpyAV	CCTTC	3 cut(s)	180, 240, 340
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 237, 267
HpySE526I	ACGT	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	161
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	3 cut(s)	5, 163, 171
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	1 cut(s)	341
MnlI	CCTC	8 cut(s)	73, 102, 139, 149, 197, 277, 316, 329
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	118, 237, 267
NdeII	GATC	1 cut(s)	161
NlaIV	GGNNCC	2 cut(s)	51, 168
NmuCI	GTSAC	1 cut(s)	100
NruI	TCGCGA	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	227, 230
Psp124BI	GAGCTC	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	51, 168
RruI	TCGCGA	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	279
SatI	GCNGC	2 cut(s)	226, 229
Sau3AI	GATC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	8 cut(s)	29, 84, 102, 123, 172, 185, 279, 327
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	3 cut(s)	226, 229, 261
SstI	GAGCTC	1 cut(s)	279
TaiI	ACGT	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	1 cut(s)	341
TauI	GCSGC	2 cut(s)	228, 231
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.