Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006495

Physical Location & Seq

Genomic Coordinates Forward (+)

78248270 .. 78251711

Gene Structure 3442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0585500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTCCATTTCCAAAACCCCATCCGGGTCTAATCCCAATCCTCCTCCTCCTCCTCTCCACCGCCGCAAGCCCCTCTCTTTCTCTCTCCTCCGACTCCTCCGCCTCGGTCTTCGAGCTCTTACCCAAATATGGGCTCCCCAGTGGGCTCCTACCCGCCTCGGTTTCCAACTACACGTTGTCCGCCGACGACGGCCGATTCGTCGTCGTTTTGGAGAAGCCGTGCTATATTCAGTTCGAGTACTTGGTGTACTACGAGACCCGCATCACCGGAAAACTGAGCTACGGCGCGATCACGGAGCTGAAGGGTATTCAGGTCCAAAGATTGTTCTTTTGGTTCGACGTCGATGAGATCAGGGTCGATTTGCCGCCGTCCGATAGTATTTACTTCACCGTTGGGATCATCAACAAGAAGCTCGATGTCGATCAGTTCCAGAGCGTTCATTCTTGCCGCGACGGGCTTTCGGGTTCGGGTTCGGGTTCTTGCCTCGGGTCGTTGAAACGGGTCGTTCAGCTTCCATCTCCACTGGAAGAAGAGATAAAGATGCTACTTACTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

186

Amino Acids

20.41

Weight (kDa)

5.05

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	39 - 145	4.5e-33	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49560 AT1G49560
fragaria_vesca	FvH4_2g06880 FvH4_2g06880 FvH4_2g06880
malus_domestica	MD05G1074600.v1.1 MD10G1089300.v1.1
prunus_persica	Prupe.4G176800_v2.0.a1 Prupe.8G116200_v2.0.a1 Prupe.8G116200_v2.0.a1
pyrus_communis	pycom05g06790 pycom10g07280
rosa_chinensis	RchiOBHm_Chr6g0259191
rosa_laevigata	RLG00000014550
rosa_multiflora	Rmu_ssc0000050.1_g000098 Rmu_ssc0000114.1_g000052
rosa_roxburghii	Rroxscaffold_4G00317960 Rroxscaffold_7G00206320 Rroxscaffold_7G00206490
rosa_rugosa	Rorug05G0585500 Rorug05G0585600
rosa_samantha	Rh6AG102500 Rh6BG094800 Rh6CG091900 Rh6DG085900
rosa_wichuraiana	Rw6G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	345
AccII	CGCG	2 cut(s)	290, 453
AciI	CCGC	8 cut(s)	63, 66, 102, 156, 183, 262, 368, 451
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	2 cut(s)	242, 251
AfiI	CCNNNNNNNGG	3 cut(s)	26, 131, 132
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	499
AluBI	AGCT	5 cut(s)	118, 282, 301, 415, 514
AluI	AGCT	5 cut(s)	118, 282, 301, 415, 514
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	1 cut(s)	193
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	259, 382
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	316
BanII	GRGCYC	3 cut(s)	120, 138, 150
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	2 cut(s)	30, 526
BceAI	ACGGC	4 cut(s)	205, 208, 301, 355
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	251
BisI	GCNGC	3 cut(s)	66, 368, 451
BlsI	GCNGC	3 cut(s)	67, 369, 452
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	3 cut(s)	6, 137, 149
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	2 cut(s)	273, 534
BmuI	ACTGGG	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	105, 159, 487
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 131, 132
Bse1I	ACTGG	2 cut(s)	141, 531
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	3 cut(s)	105, 159, 487
BseGI	GGATG	1 cut(s)	22
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	26, 131, 132
BseMII	CTCAG	2 cut(s)	269, 546
BseNI	ACTGG	2 cut(s)	141, 531
BseRI	GAGGAG	6 cut(s)	35, 38, 41, 44, 79, 88
BseX3I	CGGCCG	1 cut(s)	193
Bsh1236I	CGCG	2 cut(s)	290, 453
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	26, 270
BslI	CCNNNNNNNGG	3 cut(s)	26, 131, 132
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	3 cut(s)	120, 138, 150
Bsp143I	GATC	4 cut(s)	291, 351, 399, 424
BspACI	CCGC	8 cut(s)	63, 66, 102, 156, 183, 262, 368, 451
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	270, 547
BspFNI	CGCG	2 cut(s)	290, 453
BspLI	GGNNCC	3 cut(s)	6, 137, 149
BspPI	GGATC	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	141, 531
BssECI	CCNNGG	3 cut(s)	105, 159, 487
BssMI	GATC	4 cut(s)	291, 351, 399, 424
BssNI	GRCGYC	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	528
BstACI	GRCGYC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	278, 555
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	2 cut(s)	290, 453
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	4 cut(s)	294, 354, 402, 427
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	291, 351, 399, 424
BstMCI	CGRYCG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	2 cut(s)	290, 453
BstV2I	GAAGAC	1 cut(s)	103
BstZI	CGGCCG	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	148, 524
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	241, 250
CviQI	GTAC	2 cut(s)	241, 250
DdeI	CTNAG	2 cut(s)	278, 555
DpnI	GATC	4 cut(s)	293, 353, 401, 426
DpnII	GATC	4 cut(s)	291, 351, 399, 424
EaeI	YGGCCR	1 cut(s)	193
EagI	CGGCCG	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
EciI	GGCGGA	2 cut(s)	91, 172
Ecl136II	GAGCTC	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	193
Eco24I	GRGCYC	3 cut(s)	120, 138, 150
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	316
Eco52I	CGGCCG	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	118
EcoT38I	GRGCYC	3 cut(s)	120, 138, 150
FaiI	YATR	2 cut(s)	132, 228
FauI	CCCGC	2 cut(s)	163, 269
Fnu4HI	GCNGC	3 cut(s)	66, 368, 451
FokI	GGATG	1 cut(s)	9
FriOI	GRGCYC	3 cut(s)	120, 138, 150
Fsp4HI	GCNGC	3 cut(s)	66, 368, 451
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	3 cut(s)	66, 368, 451
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	2 cut(s)	26, 270
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	342
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	2 cut(s)	95, 198
HpaII	CCGG	2 cut(s)	26, 270
HphI	GGTGA	2 cut(s)	259, 382
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	94, 376
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	7 cut(s)	191, 194, 206, 209, 344, 347, 458
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	2 cut(s)	176, 342
HpyF3I	CTNAG	2 cut(s)	278, 555
HpySE526I	ACGT	2 cut(s)	176, 342
Hsp92I	GRCGYC	1 cut(s)	342
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	291, 351, 399, 424
LmnI	GCTCC	4 cut(s)	10, 141, 153, 298
LpnPI	CCDG	7 cut(s)	39, 154, 283, 299, 340, 446, 512
LweI	GCATC	2 cut(s)	273, 534
MaeII	ACGT	2 cut(s)	176, 342
MalI	GATC	4 cut(s)	293, 353, 401, 426
MboI	GATC	4 cut(s)	291, 351, 399, 424
MboII	GAAGA	3 cut(s)	103, 542, 545
MhlI	GDGCHC	3 cut(s)	120, 138, 150
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	117, 192
MspI	CCGG	2 cut(s)	26, 270
MspR9I	CCNGG	1 cut(s)	27
MvnI	CGCG	2 cut(s)	290, 453
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	4 cut(s)	291, 351, 399, 424
NlaIV	GGNNCC	3 cut(s)	6, 137, 149
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	67, 369, 452
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	120
PspN4I	GGNNCC	3 cut(s)	6, 137, 149
PspPI	GGNCC	1 cut(s)	316
RsaI	GTAC	2 cut(s)	242, 251
RsaNI	GTAC	2 cut(s)	241, 250
SacI	GAGCTC	1 cut(s)	120
SatI	GCNGC	3 cut(s)	66, 368, 451
Sau3AI	GATC	4 cut(s)	291, 351, 399, 424
Sau96I	GGNCC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	3 cut(s)	120, 138, 150
SetI	ASST	8 cut(s)	120, 179, 284, 303, 318, 345, 417, 516
SfaNI	GCATC	2 cut(s)	273, 534
SinI	GGWCC	1 cut(s)	316
SsiI	CCGC	8 cut(s)	63, 66, 102, 156, 183, 262, 368, 451
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	2 cut(s)	179, 345
TaqI	TCGA	7 cut(s)	114, 237, 339, 345, 360, 417, 423
TaqII	GACCGA	1 cut(s)	97
TatI	WGTACW	2 cut(s)	240, 249
TauI	GCSGC	3 cut(s)	68, 370, 453
TfiI	GAWTC	1 cut(s)	198
TscAI	CASTG	2 cut(s)	148, 531
TspDTI	ATGAA	1 cut(s)	431
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	148, 531
VpaK11BI	GGWCC	1 cut(s)	316
ZraI	GACGTC	1 cut(s)	343
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.