MD05G1074600.v1.1
MYB Family

Myb-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
15866923 .. 15870032
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1074600.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGGGTTCGGTTCCTCCAGAACTGAGCTTGGATTTTAAACCCACTTTTGTGCCCAAAACGATCAGTGATTTCCTCAAGGAGGTTTCAATGATCGGAAATGTGTCCGAAAAGCTGTCCAAGCTTGACGATTTTGTCAAGAGATTGGAGGACGAGATGAGGAAGATCGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGTTCCTATTGAATGATGCGATTCGAGCTCTGAAGGAAGATGCAATGCAATGTGCGGCGCCAAAAGTTCAACCAGTGCTGGAAGAATTCATACCAATGAAGAAAGATTGTGATAAAAACAAGGGAGGAAGTGGCAATAACAATAAGAAGGAAAAGGACTCTAGGGATAAGAAGAATTGGATGAGCTCTGTTCAGCTTTGGAACACTGATAATTATCACCAACATCCCTCTAGTGATTCCCCATATGATAGAAAGCGAGTTTCCGAAATTGATTCTAAGAGAAATGAAGCAGAAAATGGGGTAGCAAATGAGGATCCTTTCCAGACATGTAGGAATAGGACTGGAGGAAGAGCATTTATGCCATTTAAGGGGTACCCTGCTTTTTCTGTGACGCCGTTGAGGCTGGAAGAGAAAGAGGAATTGCCAGTTCATGGGCTGTCTCTGCTCACTCCAGGGATTAAGAATCCGAAGGAGGAATCGACTTCCAGTGGTTCAAGATCCACCTGTGGCAGGTCAGTCTCCTTCTCTACTGCCAATACTCAATCCAATACGCGTACTCCGCCGCAGCAGCCAACTAGCCGGAAGCAGAGAAGGTGCTGGTCGCCGGAGTTGCATCGCAAATTTGTCAATGCCTTGCAGCAACTTGGAGGTTCACAAGTGGCCACGCCAAAGCAAATTAGGGAACTTATGCAGGTTGATGGCTTGACGAATGACGAAGTGAAGAGTCATTTGCAGAAATACCGACTTCACACAAGAAGAGTTCCTGGTGCTGCAGCAGCTGGCTCGGAAAAGCAATCTGTTGGTTTGGGGGTGTTGTGGATGTCCCAAGATCAATACATGGACTCTTCAAAGGCTAGTAGTTCCCAATCTGGCTCACCCCAAGGCCCCCTCCAATTAACCGGAACTGGTGGAGATGACGAAGATAATGAAGATGCAAAATCCGAAAGTTATAGCTGGAAAGGTCACATTCACAAACCCGGAAAGGATGATGTATAG

Protein Analysis

397

Amino Acids

44.24

Weight (kDa)

8.7

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 9 - 81 4.5e-34 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 262 - 313 5.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc36I ACCTGC 2 cut(s) 696, 877
Acc65I GGTACC 1 cut(s) 567
AccB1I GGYRCC 2 cut(s) 253, 567
AccB7I CCANNNNNTGG 1 cut(s) 626
AccII CGCG 2 cut(s) 180, 748
AciI CCGC 3 cut(s) 251, 755, 758
AclWI GGATC 3 cut(s) 503, 516, 687
AcoI YGGCCR 1 cut(s) 855
AcsI RAATTY 2 cut(s) 281, 815
AcuI CTGAAG 1 cut(s) 248
AcyI GRCGYC 2 cut(s) 254, 587
AfaI GTAC 2 cut(s) 569, 751
AfiI CCNNNNNNNGG 4 cut(s) 79, 563, 626, 705
AflIII ACRYGT 2 cut(s) 521, 746
AgsI TTSAA 6 cut(s) 87, 175, 208, 266, 690, 1044
AjnI CCWGG 2 cut(s) 646, 958
AleI CACNNNNGTG 1 cut(s) 47
AluBI AGCT 9 cut(s) 27, 112, 121, 184, 224, 381, 391, 974, 1149
AluI AGCT 9 cut(s) 27, 112, 121, 184, 224, 381, 391, 974, 1149
Alw21I GWGCWC 2 cut(s) 226, 383
Alw26I GTCTC 2 cut(s) 639, 718
AlwI GGATC 3 cut(s) 503, 516, 687
AlwNI CAGNNNCTG 1 cut(s) 974
AoxI GGCC 2 cut(s) 855, 1078
ApeKI GCWGC 6 cut(s) 760, 763, 832, 965, 968, 971
ApoI RAATTY 2 cut(s) 281, 815
Asp718I GGTACC 1 cut(s) 567
AspLEI GCGC 2 cut(s) 180, 256
AspS9I GGNCC 1 cut(s) 1079
AsuC2I CCSGG 1 cut(s) 1173
AsuHPI GGTGA 2 cut(s) 404, 1062
BaeGI GKGCMC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 857
BamHI GGATCC 1 cut(s) 508
BanI GGYRCC 2 cut(s) 253, 567
BanII GRGCYC 2 cut(s) 226, 383
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
Bbv12I GWGCWC 2 cut(s) 226, 383
BbvI GCAGC 6 cut(s) 772, 775, 844, 952, 980, 983
BccI CCATC 1 cut(s) 887
BceAI ACGGC 1 cut(s) 574
BcgI CGANNNNNNTGC 2 cut(s) 960, 994
BciT130I CCWGG 2 cut(s) 648, 960
BcnI CCSGG 1 cut(s) 1173
BcoDI GTCTC 2 cut(s) 639, 718
BfaI CTAG 4 cut(s) 357, 426, 771, 1050
BfmI CTRYAG 1 cut(s) 966
BfoI RGCGCY 1 cut(s) 257
BfuAI ACCTGC 2 cut(s) 696, 877
BglI GCCNNNNNGGC 1 cut(s) 595
BisI GCNGC 8 cut(s) 252, 758, 761, 764, 833, 966, 969, 972
BlsI GCNGC 8 cut(s) 253, 759, 762, 765, 834, 967, 970, 973
Bme1390I CCNGG 3 cut(s) 648, 960, 1173
BmgT120I GGNCC 1 cut(s) 1079
BmiI GGNNCC 5 cut(s) 12, 255, 510, 569, 1081
BmrFI CCNGG 3 cut(s) 648, 960, 1173
BmsI GCATC 5 cut(s) 157, 202, 226, 817, 1117
BpmI CTGGAG 2 cut(s) 558, 630
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 1173
Bsa29I ATCGAT 1 cut(s) 165
BsaBI GATNNNNATC 1 cut(s) 408
BsaHI GRCGYC 2 cut(s) 254, 587
BsaJI CCNNGG 2 cut(s) 647, 1075
BsaWI WCCGGW 1 cut(s) 1094
BsaXI ACNNNNNCTCC 2 cut(s) 736, 766
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 563, 626, 705
Bse1I ACTGG 5 cut(s) 269, 541, 620, 681, 1105
Bse3DI GCAATG 2 cut(s) 246, 251
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 2 cut(s) 648, 960
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 647, 1075
BseGI GGATG 4 cut(s) 381, 418, 1020, 1186
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 4 cut(s) 79, 563, 626, 705
BseMI GCAATG 2 cut(s) 246, 251
BseMII CTCAG 1 cut(s) 14
BseNI ACTGG 5 cut(s) 269, 541, 620, 681, 1105
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 6 cut(s) 772, 775, 844, 952, 980, 983
Bsh1236I CGCG 2 cut(s) 180, 748
BshFI GGCC 2 cut(s) 857, 1080
BshNI GGYRCC 2 cut(s) 253, 567
BshVI ATCGAT 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 226, 383
BsiSI CCGG 4 cut(s) 775, 800, 1095, 1173
BslFI GGGAC 1 cut(s) 1003
BslI CCNNNNNNNGG 4 cut(s) 79, 563, 626, 705
BsmAI GTCTC 2 cut(s) 639, 718
BsmFI GGGAC 1 cut(s) 1003
BsnI GGCC 2 cut(s) 857, 1080
Bsp1286I GDGCHC 3 cut(s) 54, 226, 383
Bsp143I GATC 6 cut(s) 60, 90, 162, 508, 692, 1024
BspACI CCGC 3 cut(s) 251, 755, 758
BspANI GGCC 2 cut(s) 857, 1080
BspCNI CTCAG 1 cut(s) 15
BspDI ATCGAT 1 cut(s) 165
BspFNI CGCG 2 cut(s) 180, 748
BspLI GGNNCC 5 cut(s) 12, 255, 510, 569, 1081
BspMAI CTGCAG 1 cut(s) 970
BspMI ACCTGC 2 cut(s) 696, 877
BspPI GGATC 3 cut(s) 503, 516, 687
BspQI GCTCTTC 1 cut(s) 538
BspT107I GGYRCC 2 cut(s) 253, 567
BsrDI GCAATG 2 cut(s) 246, 251
BsrI ACTGG 5 cut(s) 269, 541, 620, 681, 1105
BssECI CCNNGG 2 cut(s) 647, 1075
BssMI GATC 6 cut(s) 60, 90, 162, 508, 692, 1024
BssNI GRCGYC 2 cut(s) 254, 587
BssT1I CCWWGG 1 cut(s) 1075
Bst2UI CCWGG 2 cut(s) 648, 960
Bst6I CTCTTC 5 cut(s) 538, 597, 911, 946, 1045
BstACI GRCGYC 2 cut(s) 254, 587
BstC8I GCNNGC 2 cut(s) 182, 976
BstDEI CTNAG 2 cut(s) 23, 471
BstENI CCTNNNNNAGG 2 cut(s) 77, 703
BstF5I GGATG 4 cut(s) 381, 418, 1020, 1186
BstFNI CGCG 2 cut(s) 180, 748
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 180, 256
BstKTI GATC 6 cut(s) 63, 93, 165, 511, 695, 1027
BstMAI GTCTC 2 cut(s) 639, 718
BstMBI GATC 6 cut(s) 60, 90, 162, 508, 692, 1024
BstMWI GCNNNNNNNGC 8 cut(s) 118, 221, 595, 637, 754, 763, 805, 971
BstNI CCWGG 2 cut(s) 648, 960
BstNSI RCATGY 2 cut(s) 199, 525
BstSCI CCNGG 3 cut(s) 646, 958, 1171
BstSFI CTRYAG 1 cut(s) 966
BstSLI GKGCMC 1 cut(s) 54
BstUI CGCG 2 cut(s) 180, 748
BstV1I GCAGC 6 cut(s) 772, 775, 844, 952, 980, 983
BstX2I RGATCY 2 cut(s) 508, 692
BstYI RGATCY 2 cut(s) 508, 692
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 2 cut(s) 857, 1080
BsuTUI ATCGAT 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 794
BtsCI GGATG 4 cut(s) 381, 418, 1020, 1186
BtsIMutI CAGTG 4 cut(s) 70, 276, 399, 688
BveI ACCTGC 2 cut(s) 696, 877
Cac8I GCNNGC 2 cut(s) 182, 976
CaiI CAGNNNCTG 1 cut(s) 974
CfoI GCGC 2 cut(s) 180, 256
Cfr13I GGNCC 1 cut(s) 1079
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 595
Csp6I GTAC 2 cut(s) 568, 750
CviAII CATG 4 cut(s) 196, 522, 626, 1033
CviQI GTAC 2 cut(s) 568, 750
DdeI CTNAG 2 cut(s) 23, 471
DinI GGCGCC 1 cut(s) 255
DpnI GATC 6 cut(s) 62, 92, 164, 510, 694, 1026
DpnII GATC 6 cut(s) 60, 90, 162, 508, 692, 1024
DraI TTTAAA 1 cut(s) 37
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 855
Eam1104I CTCTTC 5 cut(s) 538, 597, 911, 946, 1045
EarI CTCTTC 5 cut(s) 538, 597, 911, 946, 1045
EciI GGCGGA 1 cut(s) 744
Ecl136II GAGCTC 2 cut(s) 224, 381
Eco130I CCWWGG 1 cut(s) 1075
Eco24I GRGCYC 2 cut(s) 226, 383
Eco53kI GAGCTC 2 cut(s) 224, 381
Eco57I CTGAAG 1 cut(s) 248
EcoICRI GAGCTC 2 cut(s) 224, 381
EcoNI CCTNNNNNAGG 2 cut(s) 77, 703
EcoO109I RGGNCCY 1 cut(s) 1079
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 646, 958
EcoT14I CCWWGG 1 cut(s) 1075
EcoT38I GRGCYC 2 cut(s) 226, 383
EgeI GGCGCC 1 cut(s) 255
EheI GGCGCC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 1075
FaeI CATG 4 cut(s) 199, 525, 629, 1036
FaqI GGGAC 1 cut(s) 1003
FatI CATG 4 cut(s) 195, 521, 625, 1032
FauNDI CATATG 1 cut(s) 439
Fnu4HI GCNGC 8 cut(s) 252, 758, 761, 764, 833, 966, 969, 972
FokI GGATG 3 cut(s) 388, 405, 1027
FriOI GRGCYC 2 cut(s) 226, 383
Fsp4HI GCNGC 8 cut(s) 252, 758, 761, 764, 833, 966, 969, 972
FspBI CTAG 4 cut(s) 357, 426, 771, 1050
GlaI GCGC 2 cut(s) 179, 255
GluI GCNGC 8 cut(s) 252, 758, 761, 764, 833, 966, 969, 972
GsuI CTGGAG 2 cut(s) 558, 630
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 2 cut(s) 857, 1080
HapII CCGG 4 cut(s) 775, 800, 1095, 1173
HgaI GACGC 1 cut(s) 595
HhaI GCGC 2 cut(s) 180, 256
Hin1I GRCGYC 2 cut(s) 254, 587
Hin1II CATG 4 cut(s) 199, 525, 629, 1036
Hin6I GCGC 2 cut(s) 178, 254
HinP1I GCGC 2 cut(s) 178, 254
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 8 cut(s) 217, 353, 431, 467, 658, 671, 919, 1037
HpaII CCGG 4 cut(s) 775, 800, 1095, 1173
HphI GGTGA 2 cut(s) 404, 1062
Hpy166II GTNNAC 1 cut(s) 848
Hpy188I TCNGA 7 cut(s) 95, 106, 228, 460, 663, 982, 1138
Hpy188III TCNNGA 4 cut(s) 17, 136, 517, 690
Hpy8I GTNNAC 1 cut(s) 848
HpyAV CCTTC 6 cut(s) 181, 223, 337, 658, 727, 780
HpyCH4V TGCA 9 cut(s) 195, 239, 244, 808, 832, 886, 928, 968, 1130
HpyF10VI GCNNNNNNNGC 8 cut(s) 118, 221, 595, 637, 754, 763, 805, 971
HpyF3I CTNAG 2 cut(s) 23, 471
Hsp92I GRCGYC 2 cut(s) 254, 587
Hsp92II CATG 4 cut(s) 199, 525, 629, 1036
HspAI GCGC 2 cut(s) 178, 254
KasI GGCGCC 1 cut(s) 253
KpnI GGTACC 1 cut(s) 571
Kzo9I GATC 6 cut(s) 60, 90, 162, 508, 692, 1024
LguI GCTCTTC 1 cut(s) 538
Lsp1109I GCAGC 6 cut(s) 772, 775, 844, 952, 980, 983
LweI GCATC 5 cut(s) 157, 202, 226, 817, 1117
MaeI CTAG 4 cut(s) 357, 426, 771, 1050
MaeIII GTNAC 2 cut(s) 583, 1157
MalI GATC 6 cut(s) 62, 92, 164, 510, 694, 1026
MboI GATC 6 cut(s) 60, 90, 162, 508, 692, 1024
MflI RGATCY 2 cut(s) 508, 692
MhlI GDGCHC 3 cut(s) 54, 226, 383
MlsI TGGCCA 1 cut(s) 857
MluCI AATT 8 cut(s) 281, 370, 406, 462, 614, 815, 870, 1088
MluI ACGCGT 1 cut(s) 746
MluNI TGGCCA 1 cut(s) 857
Mly113I GGCGCC 1 cut(s) 254
MlyI GAGTC 3 cut(s) 347, 928, 1031
Mox20I TGGCCA 1 cut(s) 857
MscI TGGCCA 1 cut(s) 857
MseI TTAA 4 cut(s) 36, 561, 654, 1091
MslI CAYNNNNRTG 2 cut(s) 47, 290
Msp20I TGGCCA 1 cut(s) 857
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 4 cut(s) 775, 800, 1095, 1173
MspR9I CCNGG 3 cut(s) 648, 960, 1173
MvaI CCWGG 2 cut(s) 648, 960
MvnI CGCG 2 cut(s) 180, 748
MwoI GCNNNNNNNGC 8 cut(s) 118, 221, 595, 637, 754, 763, 805, 971
NarI GGCGCC 1 cut(s) 254
NciI CCSGG 1 cut(s) 1173
NdeI CATATG 1 cut(s) 439
NdeII GATC 6 cut(s) 60, 90, 162, 508, 692, 1024
NlaIII CATG 4 cut(s) 199, 525, 629, 1036
NlaIV GGNNCC 5 cut(s) 12, 255, 510, 569, 1081
NmuCI GTSAC 2 cut(s) 583, 1157
NspI RCATGY 2 cut(s) 199, 525
OliI CACNNNNGTG 1 cut(s) 47
PciI ACATGT 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 538
PfeI GAWTC 5 cut(s) 217, 431, 467, 658, 671
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 8 cut(s) 253, 759, 762, 765, 834, 967, 970, 973
PleI GAGTC 3 cut(s) 347, 927, 1031
PluTI GGCGCC 1 cut(s) 257
PpsI GAGTC 3 cut(s) 347, 927, 1031
PscI ACATGT 1 cut(s) 521
Psp124BI GAGCTC 2 cut(s) 226, 383
Psp6I CCWGG 2 cut(s) 646, 958
PspGI CCWGG 2 cut(s) 646, 958
PspN4I GGNNCC 5 cut(s) 12, 255, 510, 569, 1081
PspPI GGNCC 1 cut(s) 1079
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 2 cut(s) 508, 692
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 2 cut(s) 569, 751
RsaNI GTAC 2 cut(s) 568, 750
RseI CAYNNNNRTG 2 cut(s) 47, 290
SacI GAGCTC 2 cut(s) 226, 383
SapI GCTCTTC 1 cut(s) 538
SaqAI TTAA 4 cut(s) 36, 561, 654, 1091
SatI GCNGC 8 cut(s) 252, 758, 761, 764, 833, 966, 969, 972
Sau3AI GATC 6 cut(s) 60, 90, 162, 508, 692, 1024
Sau96I GGNCC 1 cut(s) 1079
SchI GAGTC 3 cut(s) 347, 928, 1031
ScrFI CCNGG 3 cut(s) 648, 960, 1173
SduI GDGCHC 3 cut(s) 54, 226, 383
SfaNI GCATC 5 cut(s) 157, 202, 226, 817, 1117
SfcI CTRYAG 1 cut(s) 966
SfoI GGCGCC 1 cut(s) 255
SmiMI CAYNNNNRTG 2 cut(s) 47, 290
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 8 cut(s) 281, 370, 406, 462, 614, 815, 870, 1088
SsiI CCGC 3 cut(s) 251, 755, 758
SspDI GGCGCC 1 cut(s) 253
SspMI CTAG 4 cut(s) 357, 426, 771, 1050
SstI GAGCTC 2 cut(s) 226, 383
StyD4I CCNGG 3 cut(s) 646, 958, 1171
StyI CCWWGG 1 cut(s) 1075
TaqI TCGA 3 cut(s) 165, 220, 674
TasI AATT 8 cut(s) 281, 370, 406, 462, 614, 815, 870, 1088
TauI GCSGC 2 cut(s) 254, 760
TfiI GAWTC 5 cut(s) 217, 431, 467, 658, 671
Tru1I TTAA 4 cut(s) 36, 561, 654, 1091
Tru9I TTAA 4 cut(s) 36, 561, 654, 1091
TscAI CASTG 4 cut(s) 70, 276, 406, 688
TseFI GTSAC 2 cut(s) 583, 1157
TseI GCWGC 6 cut(s) 760, 763, 832, 965, 968, 971
Tsp45I GTSAC 2 cut(s) 583, 1157
TspDTI ATGAA 5 cut(s) 274, 308, 495, 614, 1137
TspRI CASTG 4 cut(s) 70, 276, 406, 688
Van91I CCANNNNNTGG 1 cut(s) 626
XagI CCTNNNNNAGG 2 cut(s) 77, 703
XapI RAATTY 2 cut(s) 281, 815
XceI RCATGY 2 cut(s) 199, 525
XspI CTAG 4 cut(s) 357, 426, 771, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.