Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006495

Physical Location & Seq

Genomic Coordinates Forward (+)

10493073 .. 10494011

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAGGAAGAGCGACGCCTTCAAGGGCGAACTTCCTCTTTGCATGTTTCTCTTGAATGATGCGATTCTAATTATGAAGGAAGATGCAGAATGTAATGTGCGGCACCAAATGTTCAAGAAGAATTGTGAAAAAAACAATGGAGGAACCAATAACAATAAGAAAGAAAAGGACTATAGAGATAAGAAGTATTGGACGAGCTTTGGAACACTGATAAGGTGGAAGGGAAATAAGACAAGAGGGTGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

83

Amino Acids

9.76

Weight (kDa)

9.71

Isoelectric Point (pI)

22.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49560 AT1G49560
fragaria_vesca	FvH4_2g06880 FvH4_2g06880 FvH4_2g06880
malus_domestica	MD05G1074600.v1.1 MD10G1089300.v1.1
prunus_persica	Prupe.4G176800_v2.0.a1 Prupe.8G116200_v2.0.a1 Prupe.8G116200_v2.0.a1
pyrus_communis	pycom05g06790 pycom10g07280
rosa_chinensis	RchiOBHm_Chr6g0259191
rosa_laevigata	RLG00000014550
rosa_multiflora	Rmu_ssc0000050.1_g000098 Rmu_ssc0000114.1_g000052
rosa_roxburghii	Rroxscaffold_4G00317960 Rroxscaffold_7G00206320 Rroxscaffold_7G00206490
rosa_rugosa	Rorug05G0585500 Rorug05G0585600
rosa_samantha	Rh6AG102500 Rh6BG094800 Rh6CG091900 Rh6DG085900
rosa_wichuraiana	Rw6G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	102
AciI	CCGC	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	22, 55, 115
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	104, 145
BmsI	GCATC	2 cut(s)	49, 73
BsaHI	GRCGYC	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	104, 145
BspQI	GCTCTTC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	102
BssNI	GRCGYC	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	206
CseI	GACGC	1 cut(s)	23
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	1 cut(s)	198
CviKI_1	RGCY	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 74, 174
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
HgaI	GACGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	52, 115
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	28, 70, 214
HpyCH4V	TGCA	2 cut(s)	42, 86
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	46
LguI	GCTCTTC	1 cut(s)	2
LweI	GCATC	2 cut(s)	49, 73
MboII	GAAGA	3 cut(s)	19, 92, 130
MluCI	AATT	2 cut(s)	69, 121
MnlI	CCTC	3 cut(s)	45, 134, 230
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	104, 145
NspI	RCATGY	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	2
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	104, 145
SapI	GCTCTTC	1 cut(s)	2
SatI	GCNGC	1 cut(s)	101
SetI	ASST	2 cut(s)	200, 218
SfaNI	GCATC	2 cut(s)	49, 73
SfcI	CTRYAG	1 cut(s)	172
SgeI	CNNG	5 cut(s)	34, 55, 64, 127, 207
Sse9I	AATT	2 cut(s)	69, 121
SsiI	CCGC	1 cut(s)	100
TasI	AATT	2 cut(s)	69, 121
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	64
TscAI	CASTG	1 cut(s)	213
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	213
XceI	RCATGY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.