Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006495

Physical Location & Seq

Genomic Coordinates Reverse (-)

10119755 .. 10123598

Gene Structure 3844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG091900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGTTCGGTTCCTCCTGAACTGAGCTTGGATTTTAGACCCTCTTTCGTTCCGAAGACGATCACTGATTTCCTCAAGGAGGTTTCTTTGATCGGAAATGTGACCGAGAGGCTCTCAAAGCTTGACGATTTCGTCAAGCGATTGGAGGAGGAGATGAGGAAGATCGACGCCTTCAAGCGCGAGCTTCCTCTTTGCATGTTCCTCTTGAATGATGCAATTCAAGCTCTGAAGGAAGATGCAATGCAATGTGCGAAGCCAAATGTTCAACCAGTGTTGGAAGAATTCATACCATTGAAGAAAGATTGTGATAAAAACACCGGAGAACCCAATAACCATAAGAAAGAAAAAGACTCTAGGGATAAGAAGAATTGGATGAGCTCTGTTCAGCTTTGGAACACTGATAATTATCATCCTCCAACTAGTGATTTCCCTTGTGATCGAAAGCAAGGTTCCGAAATTGATTCTAAGAGAAATGAAACCAGAAATGGGATAGCAAATGAGGATCCATTTCAGACATGTAGAGATAGGAATGGTGGAAGAGCATTCGTGCCATTCAAGGCATACCCTGCTTTTCCTGTCACAGCTGTGAGGAAGGAAGATAAAGAGGATTTGGCAGTTCATGGGTTGTCTTTGCTCACTCCCGGAATCAAGAATCCAAAGGAAGAATCAGCTTCTAGTGGTTCAAGATCCACTTGTGGAAGGGCAGTCTCCTTCTCTGCTGCCAATGTTCAATCCCATATGAGGATTTCGCCACAGCAGCCAACTTCCCGGAAACAGAGAAGGTGCTGGTCGCCGGAGTTGCATCGGAGGTTTGTCAATGCTTTGCAGCAACTTGGAGGTTCACAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

283

Amino Acids

32.05

Weight (kDa)

8.9

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHO5_N	PF26575	9 - 81	1.4e-33	HHO5-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49560 AT1G49560
fragaria_vesca	FvH4_2g06880 FvH4_2g06880 FvH4_2g06880
malus_domestica	MD05G1074600.v1.1 MD10G1089300.v1.1
prunus_persica	Prupe.4G176800_v2.0.a1 Prupe.8G116200_v2.0.a1 Prupe.8G116200_v2.0.a1
pyrus_communis	pycom05g06790 pycom10g07280
rosa_chinensis	RchiOBHm_Chr6g0259191
rosa_laevigata	RLG00000014550
rosa_multiflora	Rmu_ssc0000050.1_g000098 Rmu_ssc0000114.1_g000052
rosa_roxburghii	Rroxscaffold_4G00317960 Rroxscaffold_7G00206320 Rroxscaffold_7G00206490
rosa_rugosa	Rorug05G0585500 Rorug05G0585600
rosa_samantha	Rh6AG102500 Rh6BG094800 Rh6CG091900 Rh6DG085900
rosa_wichuraiana	Rw6G008860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AccII	CGCG	1 cut(s)	180
AclWI	GGATC	3 cut(s)	497, 510, 681
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	3 cut(s)	79, 486, 741
AflIII	ACRYGT	1 cut(s)	515
AgsI	TTSAA	8 cut(s)	175, 208, 221, 266, 295, 556, 684, 731
AhlI	ACTAGT	1 cut(s)	419
AleI	CACNNNNGTG	1 cut(s)	584
AluBI	AGCT	8 cut(s)	27, 121, 184, 224, 378, 388, 584, 671
AluI	AGCT	8 cut(s)	27, 121, 184, 224, 378, 388, 584, 671
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	712
AlwI	GGATC	3 cut(s)	497, 510, 681
ApeKI	GCWGC	3 cut(s)	719, 757, 826
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	180
AsuC2I	CCSGG	2 cut(s)	642, 769
BamHI	GGATCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	3 cut(s)	706, 769, 838
BcnI	CCSGG	2 cut(s)	642, 769
BcoDI	GTCTC	1 cut(s)	712
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	3 cut(s)	354, 420, 675
BisI	GCNGC	3 cut(s)	720, 758, 827
BlsI	GCNGC	3 cut(s)	721, 759, 828
Bme1390I	CCNGG	2 cut(s)	642, 769
BmiI	GGNNCC	3 cut(s)	12, 451, 504
BmrFI	CCNGG	2 cut(s)	642, 769
BmsI	GCATC	3 cut(s)	202, 226, 811
BpiI	GAAGAC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	2 cut(s)	642, 769
BsaBI	GATNNNNATC	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 486, 741
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	2 cut(s)	246, 251
Bse8I	GATNNNNATC	1 cut(s)	405
BseGI	GGATG	2 cut(s)	378, 409
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	79, 486, 741
BseMI	GCAATG	2 cut(s)	246, 251
BseMII	CTCAG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	161, 164
BseXI	GCAGC	3 cut(s)	706, 769, 838
Bsh1236I	CGCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	4 cut(s)	318, 642, 769, 794
BslI	CCNNNNNNNGG	3 cut(s)	79, 486, 741
BsmAI	GTCTC	1 cut(s)	712
BsmI	GAATGC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	6 cut(s)	60, 90, 162, 436, 502, 686
BspCNI	CTCAG	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	12, 451, 504
BspPI	GGATC	3 cut(s)	497, 510, 681
BspQI	GCTCTTC	1 cut(s)	532
BsrDI	GCAATG	2 cut(s)	246, 251
BsrI	ACTGG	1 cut(s)	269
BssMI	GATC	6 cut(s)	60, 90, 162, 436, 502, 686
BssNI	GRCGYC	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	532
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	23, 465
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	378, 409
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	6 cut(s)	63, 93, 165, 439, 505, 689
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	6 cut(s)	60, 90, 162, 436, 502, 686
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 221, 566, 757, 799
BstNSI	RCATGY	2 cut(s)	199, 519
BstSCI	CCNGG	2 cut(s)	640, 767
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	706, 769, 838
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	502, 686
BstYI	RGATCY	2 cut(s)	502, 686
BtsCI	GGATG	2 cut(s)	378, 409
BtsIMutI	CAGTG	3 cut(s)	63, 276, 396
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	180
CseI	GACGC	1 cut(s)	176
CviAII	CATG	3 cut(s)	196, 516, 620
DdeI	CTNAG	2 cut(s)	23, 465
DpnI	GATC	6 cut(s)	62, 92, 164, 438, 504, 688
DpnII	GATC	6 cut(s)	60, 90, 162, 436, 502, 686
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
Ecl136II	GAGCTC	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	380
FaeI	CATG	3 cut(s)	199, 519, 623
FaiI	YATR	8 cut(s)	197, 287, 336, 517, 562, 621, 738, 740
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FatI	CATG	3 cut(s)	195, 515, 619
FauNDI	CATATG	1 cut(s)	738
Fnu4HI	GCNGC	3 cut(s)	720, 758, 827
FokI	GGATG	2 cut(s)	385, 396
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	720, 758, 827
FspBI	CTAG	3 cut(s)	354, 420, 675
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	3 cut(s)	720, 758, 827
HapII	CCGG	4 cut(s)	318, 642, 769, 794
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	199, 519, 623
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	5 cut(s)	350, 461, 645, 652, 665
HpaII	CCGG	4 cut(s)	318, 642, 769, 794
Hpy166II	GTNNAC	1 cut(s)	842
Hpy188I	TCNGA	6 cut(s)	54, 95, 228, 454, 513, 807
Hpy188III	TCNNGA	4 cut(s)	17, 205, 649, 684
Hpy8I	GTNNAC	1 cut(s)	842
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	6 cut(s)	181, 223, 586, 693, 721, 774
HpyCH4V	TGCA	6 cut(s)	195, 215, 239, 244, 802, 826
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 221, 566, 757, 799
HpyF3I	CTNAG	2 cut(s)	23, 465
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	199, 519, 623
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	6 cut(s)	60, 90, 162, 436, 502, 686
LguI	GCTCTTC	1 cut(s)	532
Lsp1109I	GCAGC	3 cut(s)	706, 769, 838
LweI	GCATC	3 cut(s)	202, 226, 811
MaeI	CTAG	3 cut(s)	354, 420, 675
MaeIII	GTNAC	2 cut(s)	100, 577
MalI	GATC	6 cut(s)	62, 92, 164, 438, 504, 688
MboI	GATC	6 cut(s)	60, 90, 162, 436, 502, 686
MboII	GAAGA	9 cut(s)	67, 172, 245, 290, 307, 376, 549, 608, 674
MflI	RGATCY	2 cut(s)	502, 686
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	5 cut(s)	216, 281, 367, 403, 456
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	2 cut(s)	255, 440
MslI	CAYNNNNRTG	1 cut(s)	584
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	4 cut(s)	318, 642, 769, 794
MspR9I	CCNGG	2 cut(s)	642, 769
Mva1269I	GAATGC	1 cut(s)	542
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	118, 221, 566, 757, 799
NciI	CCSGG	2 cut(s)	642, 769
NdeI	CATATG	1 cut(s)	738
NdeII	GATC	6 cut(s)	60, 90, 162, 436, 502, 686
NlaIII	CATG	3 cut(s)	199, 519, 623
NlaIV	GGNNCC	3 cut(s)	12, 451, 504
NmuCI	GTSAC	2 cut(s)	100, 577
NspI	RCATGY	2 cut(s)	199, 519
OliI	CACNNNNGTG	1 cut(s)	584
PciI	ACATGT	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	532
PctI	GAATGC	1 cut(s)	542
PfeI	GAWTC	4 cut(s)	461, 645, 652, 665
PfoI	TCCNGGA	2 cut(s)	640, 767
PkrI	GCNGC	3 cut(s)	721, 759, 828
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PscI	ACATGT	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	380
PspN4I	GGNNCC	3 cut(s)	12, 451, 504
PsuI	RGATCY	2 cut(s)	502, 686
PvuII	CAGCTG	1 cut(s)	584
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	532
SatI	GCNGC	3 cut(s)	720, 758, 827
Sau3AI	GATC	6 cut(s)	60, 90, 162, 436, 502, 686
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	642, 769
SduI	GDGCHC	1 cut(s)	380
SfaNI	GCATC	3 cut(s)	202, 226, 811
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	5 cut(s)	216, 281, 367, 403, 456
SspMI	CTAG	3 cut(s)	354, 420, 675
SstI	GAGCTC	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	640, 767
TaqI	TCGA	2 cut(s)	165, 439
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	5 cut(s)	216, 281, 367, 403, 456
TfiI	GAWTC	4 cut(s)	461, 645, 652, 665
TscAI	CASTG	3 cut(s)	70, 276, 403
TseFI	GTSAC	2 cut(s)	100, 577
TseI	GCWGC	3 cut(s)	719, 757, 826
Tsp45I	GTSAC	2 cut(s)	100, 577
TspDTI	ATGAA	3 cut(s)	274, 489, 608
TspRI	CASTG	3 cut(s)	70, 276, 403
XagI	CCTNNNNNAGG	1 cut(s)	77
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	2 cut(s)	199, 519
XspI	CTAG	3 cut(s)	354, 420, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.