AT1G49700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006013
Physical Location & Seq
Reverse (-)
18388792 .. 18390523
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49700.2

Sequence Viewer

Length: 840 bp
ATGAGCAGATACCAGTATATTCTGAGAACCATAGATTATGTCAAGGAAAAAATCGAGAGGAGGTGTATTCAAAAGTACATGAGTTTGGAAGAAACCATGACTTATATGTATGATCATGACCATATTCCTAAACATATCACTGCAACAATTTGGGAACATCTTCAAAGAGAGAACCCAAATTTCTTTAAAGAATACAACAAACGATGCGAATTGGTTCGTCAAATAGTTACACTCAACGACTTGCTTGCTCAGCAAATAGATCTGATGCAAAGACTTAGCCAACTTGATGTTGGTACTACTGCACCAGTAACAAAGTTGCAAGAACCTAATGATCATCATCATGATGAAGTCCAAACTCTTGAACAGTGGTTGGAGACTAATGGTTTTGCTAATATAGAAGATACATTCCTTTGTTTAAGCGATCTGGTTGATGCACCAGTAACAGAGGTGCAGAAACCTAAGGATAAAGATCAAAGTTGTGATCAGTGGATTAATGGGTCTAATGATTTAGCTTCTATAGAAGAAACAGTTTCTTCTTTGATCAATCCATCACCATTTGCTGAAACACCACAATCAGAACCTCCTGGTCTACGATACGATACCGATTGTGCTTGCATTACCGCAACGTCGAACCTAGTAACGTGGGTTTATGATCCGAGTGGAGACAACAAGGTGATGGTACATTGGGTCGGATCTCAATGGGCCGGGTTCGGAGCCAATATCTCTTTAGAGCGGAGGAGACCGCGTGAGGCTGGTTTCACAGAGCAGCGTCCACCTTCCGTTCTCGACGGTGGAAGGATAACGGGCCCGTTGTCTTCCGAGCCCACTATGACCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

279

Amino Acids

32.04

Weight (kDa)

4.94

Isoelectric Point (pI)

64.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 14 - 66 1.1e-17 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 733
AccI GTMKAC 1 cut(s) 589
AccII CGCG 1 cut(s) 745
AciI CCGC 3 cut(s) 621, 733, 743
AclWI GGATC 2 cut(s) 647, 700
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 3 cut(s) 77, 295, 681
AgsI TTSAA 3 cut(s) 71, 164, 362
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 1 cut(s) 512
AluI AGCT 1 cut(s) 512
Alw26I GTCTC 3 cut(s) 368, 657, 733
AlwI GGATC 2 cut(s) 647, 700
AoxI GGCC 2 cut(s) 702, 805
ApaI GGGCCC 1 cut(s) 809
ApeKI GCWGC 1 cut(s) 766
ApoI RAATTY 1 cut(s) 178
AseI ATTAAT 1 cut(s) 492
Asp700I GAANNNNTTC 2 cut(s) 159, 213
AspS9I GGNCC 3 cut(s) 702, 805, 806
AsuC2I CCSGG 1 cut(s) 706
AsuHPI GGTGA 2 cut(s) 543, 685
AxyI CCTNAGG 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 809
BanII GRGCYC 2 cut(s) 809, 825
BbsI GAAGAC 1 cut(s) 807
BbvI GCAGC 1 cut(s) 778
BccI CCATC 2 cut(s) 556, 670
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 1 cut(s) 585
BclI TGATCA 4 cut(s) 112, 331, 481, 540
BcnI CCSGG 1 cut(s) 706
BcoDI GTCTC 3 cut(s) 368, 657, 733
BfaI CTAG 1 cut(s) 635
BfmI CTRYAG 1 cut(s) 516
BglII AGATCT 1 cut(s) 259
BisI GCNGC 1 cut(s) 767
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 768
Bme1390I CCNGG 2 cut(s) 585, 706
BmgT120I GGNCC 3 cut(s) 702, 805, 806
BmiI GGNNCC 2 cut(s) 715, 807
BmrFI CCNGG 2 cut(s) 585, 706
BmsI GCATC 3 cut(s) 194, 255, 421
BpiI GAAGAC 1 cut(s) 807
Bpu1102I GCTNAGC 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 706
BsaBI GATNNNNATC 2 cut(s) 336, 468
BsaI GGTCTC 1 cut(s) 733
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bse1I ACTGG 3 cut(s) 13, 305, 437
Bse21I CCTNAGG 1 cut(s) 459
Bse8I GATNNNNATC 2 cut(s) 336, 468
BseBI CCWGG 1 cut(s) 585
BseJI GATNNNNATC 2 cut(s) 336, 468
BseMII CTCAG 2 cut(s) 14, 263
BseNI ACTGG 3 cut(s) 13, 305, 437
BseRI GAGGAG 2 cut(s) 73, 751
BseSI GKGCMC 1 cut(s) 809
BseXI GCAGC 1 cut(s) 778
BsgI GTGCAG 2 cut(s) 285, 470
Bsh1236I CGCG 1 cut(s) 745
BshFI GGCC 2 cut(s) 704, 807
BsiSI CCGG 1 cut(s) 705
BsmAI GTCTC 3 cut(s) 368, 657, 733
BsnI GGCC 2 cut(s) 704, 807
Bso31I GGTCTC 1 cut(s) 733
Bsp120I GGGCCC 1 cut(s) 805
Bsp1286I GDGCHC 2 cut(s) 809, 825
Bsp143I GATC 9 cut(s) 112, 259, 331, 421, 469, 481, 540, 652, 692
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 3 cut(s) 621, 733, 743
BspANI GGCC 2 cut(s) 704, 807
BspCNI CTCAG 2 cut(s) 15, 262
BspFNI CGCG 1 cut(s) 745
BspHI TCATGA 2 cut(s) 115, 340
BspLI GGNNCC 2 cut(s) 715, 807
BspPI GGATC 2 cut(s) 647, 700
BspTNI GGTCTC 1 cut(s) 733
BsrBI CCGCTC 1 cut(s) 733
BsrI ACTGG 3 cut(s) 13, 305, 437
BssMI GATC 9 cut(s) 112, 259, 331, 421, 469, 481, 540, 652, 692
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 366, 529, 791
BstC8I GCNNGC 2 cut(s) 246, 613
BstDEI CTNAG 4 cut(s) 23, 249, 275, 459
BstFNI CGCG 1 cut(s) 745
BstKTI GATC 9 cut(s) 115, 262, 334, 424, 472, 484, 543, 655, 695
BstMAI GTCTC 3 cut(s) 368, 657, 733
BstMBI GATC 9 cut(s) 112, 259, 331, 421, 469, 481, 540, 652, 692
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 2 cut(s) 583, 704
BstSFI CTRYAG 1 cut(s) 516
BstSLI GKGCMC 1 cut(s) 809
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 1 cut(s) 778
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 2 cut(s) 259, 692
BstYI RGATCY 2 cut(s) 259, 692
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 2 cut(s) 704, 807
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 138, 371, 491
Cac8I GCNNGC 2 cut(s) 246, 613
CciI TCATGA 2 cut(s) 115, 340
Cfr13I GGNCC 3 cut(s) 702, 805, 806
CseI GACGC 1 cut(s) 758
Csp6I GTAC 3 cut(s) 76, 294, 680
CviAII CATG 4 cut(s) 79, 97, 116, 341
CviJI RGCY 7 cut(s) 279, 512, 704, 716, 752, 807, 823
CviKI_1 RGCY 7 cut(s) 279, 512, 704, 716, 752, 807, 823
CviQI GTAC 3 cut(s) 76, 294, 680
DdeI CTNAG 4 cut(s) 23, 249, 275, 459
DpnI GATC 9 cut(s) 114, 261, 333, 423, 471, 483, 542, 654, 694
DpnII GATC 9 cut(s) 112, 259, 331, 421, 469, 481, 540, 652, 692
DraI TTTAAA 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 809, 825
Eco31I GGTCTC 1 cut(s) 733
Eco81I CCTNAGG 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 583
EcoT38I GRGCYC 2 cut(s) 809, 825
FaeI CATG 4 cut(s) 82, 100, 119, 344
FatI CATG 4 cut(s) 78, 96, 115, 340
FbaI TGATCA 4 cut(s) 112, 331, 481, 540
FblI GTMKAC 1 cut(s) 589
Fnu4HI GCNGC 1 cut(s) 767
FriOI GRGCYC 2 cut(s) 809, 825
Fsp4HI GCNGC 1 cut(s) 767
FspBI CTAG 1 cut(s) 635
GluI GCNGC 1 cut(s) 767
HaeIII GGCC 2 cut(s) 704, 807
HapII CCGG 1 cut(s) 705
HgaI GACGC 1 cut(s) 758
Hin1II CATG 4 cut(s) 82, 100, 119, 344
HpaII CCGG 1 cut(s) 705
HphI GGTGA 2 cut(s) 543, 685
Hpy166II GTNNAC 2 cut(s) 590, 773
Hpy188I TCNGA 7 cut(s) 24, 264, 577, 657, 692, 713, 820
Hpy188III TCNNGA 5 cut(s) 55, 116, 341, 359, 785
Hpy8I GTNNAC 2 cut(s) 590, 773
Hpy99I CGWCG 2 cut(s) 631, 791
HpyAV CCTTC 2 cut(s) 786, 789
HpyCH4III ACNGT 3 cut(s) 366, 529, 791
HpyCH4IV ACGT 2 cut(s) 626, 641
HpyCH4V TGCA 7 cut(s) 143, 268, 302, 319, 434, 451, 615
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 4 cut(s) 23, 249, 275, 459
HpySE526I ACGT 2 cut(s) 626, 641
Hsp92II CATG 4 cut(s) 82, 100, 119, 344
Ksp22I TGATCA 4 cut(s) 112, 331, 481, 540
Kzo9I GATC 9 cut(s) 112, 259, 331, 421, 469, 481, 540, 652, 692
LmnI GCTCC 1 cut(s) 713
LpnPI CCDG 8 cut(s) 26, 318, 410, 450, 570, 597, 718, 738
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 3 cut(s) 194, 255, 421
MaeI CTAG 1 cut(s) 635
MaeII ACGT 2 cut(s) 626, 641
MaeIII GTNAC 4 cut(s) 226, 307, 439, 637
MalI GATC 9 cut(s) 114, 261, 333, 423, 471, 483, 542, 654, 694
MbiI CCGCTC 1 cut(s) 733
MboI GATC 9 cut(s) 112, 259, 331, 421, 469, 481, 540, 652, 692
MboII GAAGA 6 cut(s) 101, 152, 410, 525, 533, 807
MflI RGATCY 2 cut(s) 259, 692
MhlI GDGCHC 2 cut(s) 809, 825
MluCI AATT 3 cut(s) 147, 178, 209
MmeI TCCRAC 2 cut(s) 351, 670
MnlI CCTC 6 cut(s) 51, 54, 439, 591, 729, 742
MroXI GAANNNNTTC 2 cut(s) 159, 213
MseI TTAA 3 cut(s) 186, 416, 492
MslI CAYNNNNRTG 2 cut(s) 339, 342
MspI CCGG 1 cut(s) 705
MspR9I CCNGG 2 cut(s) 585, 706
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 1 cut(s) 250
NciI CCSGG 1 cut(s) 706
NdeII GATC 9 cut(s) 112, 259, 331, 421, 469, 481, 540, 652, 692
NlaIII CATG 4 cut(s) 82, 100, 119, 344
NlaIV GGNNCC 2 cut(s) 715, 807
PagI TCATGA 2 cut(s) 115, 340
PdmI GAANNNNTTC 2 cut(s) 159, 213
PkrI GCNGC 1 cut(s) 768
PshBI ATTAAT 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 2 cut(s) 715, 807
PspOMI GGGCCC 1 cut(s) 805
PspPI GGNCC 3 cut(s) 702, 805, 806
PsuI RGATCY 2 cut(s) 259, 692
RsaI GTAC 3 cut(s) 77, 295, 681
RsaNI GTAC 3 cut(s) 76, 294, 680
RseI CAYNNNNRTG 2 cut(s) 339, 342
SaqAI TTAA 3 cut(s) 186, 416, 492
SatI GCNGC 1 cut(s) 767
Sau3AI GATC 9 cut(s) 112, 259, 331, 421, 469, 481, 540, 652, 692
Sau96I GGNCC 3 cut(s) 702, 805, 806
ScrFI CCNGG 2 cut(s) 585, 706
SduI GDGCHC 2 cut(s) 809, 825
SfaNI GCATC 3 cut(s) 194, 255, 421
SfcI CTRYAG 1 cut(s) 516
SmiMI CAYNNNNRTG 2 cut(s) 339, 342
Sse9I AATT 3 cut(s) 147, 178, 209
SsiI CCGC 3 cut(s) 621, 733, 743
SspMI CTAG 1 cut(s) 635
StyD4I CCNGG 2 cut(s) 583, 704
TaaI ACNGT 3 cut(s) 366, 529, 791
TaiI ACGT 2 cut(s) 629, 644
TaqI TCGA 3 cut(s) 54, 629, 786
TasI AATT 3 cut(s) 147, 178, 209
TatI WGTACW 1 cut(s) 75
Tru1I TTAA 3 cut(s) 186, 416, 492
Tru9I TTAA 3 cut(s) 186, 416, 492
TscAI CASTG 3 cut(s) 145, 371, 491
TseI GCWGC 1 cut(s) 766
TspDTI ATGAA 1 cut(s) 360
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 3 cut(s) 145, 371, 491
VspI ATTAAT 1 cut(s) 492
XapI RAATTY 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 589
XmnI GAANNNNTTC 2 cut(s) 159, 213
XspI CTAG 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.