AT3G55240

Plant protein 1589 of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006013
Physical Location & Seq
Reverse (-)
20473335 .. 20475332
1998 bp
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UTR
Exon/CDS
Intron
AT3G55240.1

Sequence Viewer

Length: 288 bp
ATGGCAGATTCTTCTTCTGCTTCTTACATTCACATGGTGCAGCACATGATAGAGAAATGTTTGATCTTCCATATGAGCAAAGAAGAGTGTGTGGAAGCTCTCTCTAAGCATGCAAACATCACTCCTGTCATCACCTCTACTGTGTGGAAGGAGCTGGAGAAAGAGAACAAGGAATTCTTCAAGGCGTATGAGGAGAGGCAAAGCAAACAAGAGCAAATGTCGGAGGAAGAGACAAACCAGATGATCCAGAAGATTATCTCGGATTCATCTAAAGAATCCGACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

95

Amino Acids

11.09

Weight (kDa)

4.95

Isoelectric Point (pI)

75.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 13 - 64 4.5e-28 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 173
AdeI CACNNNGTG 1 cut(s) 37
AgsI TTSAA 1 cut(s) 181
AluBI AGCT 2 cut(s) 98, 154
AluI AGCT 2 cut(s) 98, 154
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 124
BbvI GCAGC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 63, 243
BspPI GGATC 1 cut(s) 238
BssMI GATC 2 cut(s) 63, 243
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 78, 222
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 105
BstKTI GATC 2 cut(s) 66, 246
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 63, 243
BstNSI RCATGY 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 111
CviAII CATG 3 cut(s) 34, 46, 110
CviJI RGCY 2 cut(s) 98, 154
CviKI_1 RGCY 2 cut(s) 98, 154
DdeI CTNAG 1 cut(s) 105
DpnI GATC 2 cut(s) 65, 245
DpnII GATC 2 cut(s) 63, 243
DraIII CACNNNGTG 1 cut(s) 37
Eam1104I CTCTTC 2 cut(s) 78, 222
EarI CTCTTC 2 cut(s) 78, 222
EcoRI GAATTC 1 cut(s) 173
FaeI CATG 3 cut(s) 37, 49, 113
FaiI YATR 6 cut(s) 35, 47, 72, 74, 111, 189
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 3 cut(s) 33, 45, 109
FauNDI CATATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 176
Hin1II CATG 3 cut(s) 37, 49, 113
HinfI GANTC 3 cut(s) 8, 263, 275
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 223, 262, 280
Hpy188III TCNNGA 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 40, 113
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 3 cut(s) 37, 49, 113
Kzo9I GATC 2 cut(s) 63, 243
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 138, 140, 251, 260
Lsp1109I GCAGC 1 cut(s) 52
MalI GATC 2 cut(s) 65, 245
MboI GATC 2 cut(s) 63, 243
MboII GAAGA 7 cut(s) 3, 6, 58, 95, 169, 239, 262
MluCI AATT 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 4 cut(s) 145, 184, 189, 217
MslI CAYNNNNRTG 1 cut(s) 32
NdeI CATATG 1 cut(s) 72
NdeII GATC 2 cut(s) 63, 243
NlaIII CATG 3 cut(s) 37, 49, 113
NspI RCATGY 1 cut(s) 113
PaeI GCATGC 1 cut(s) 113
PfeI GAWTC 3 cut(s) 8, 263, 275
PkrI GCNGC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 32
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 63, 243
SetI ASST 3 cut(s) 100, 137, 156
SmiMI CAYNNNNRTG 1 cut(s) 32
SphI GCATGC 1 cut(s) 113
Sse9I AATT 1 cut(s) 173
TaaI ACNGT 1 cut(s) 142
TasI AATT 1 cut(s) 173
TfiI GAWTC 3 cut(s) 8, 263, 275
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 255
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.