Rh1AG331000

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006013
Physical Location & Seq
Reverse (-)
56355773 .. 56359669
3897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG331000.1

Sequence Viewer

Length: 285 bp
ATGGGAGACTCTTCTGCTTCATACATACACCTGGTGCAGCACCTGATAGAGAAGTGTTTGATCTTCCACATGAGCAAAGAAGAGTGCATGGAAGCTCTGTCTAAGCATGCAAACATCACACCTGTCATCACCTCCACCGTGTGGAATGAACTGGAGAAAGAGAACAAGGAGTTCTTCGAGGCGTATGCAGTGTCTCAGAACAAAAAAGATCGAATGTCTGAGGAAGAGACAAGTCAATTGATCAAAAAGATGATATCAGATTCCTCCAAAGATTCAGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

94

Amino Acids

10.82

Weight (kDa)

5.02

Isoelectric Point (pI)

79.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 12 - 63 4e-28 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 141
AdeI CACNNNGTG 2 cut(s) 34, 141
AfiI CCNNNNNNNGG 1 cut(s) 141
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 198, 221
AlwNI CAGNNNCTG 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 121
BbvI GCAGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 32
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 198, 221
BfaI CTAG 1 cut(s) 283
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 209, 210
BseNI ACTGG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 198, 221
Bsp143I GATC 3 cut(s) 60, 208, 240
BspCNI CTCAG 2 cut(s) 208, 211
BsrI ACTGG 1 cut(s) 156
BssMI GATC 3 cut(s) 60, 208, 240
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 3 cut(s) 16, 75, 219
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 3 cut(s) 102, 195, 219
BstKTI GATC 3 cut(s) 63, 211, 243
BstMAI GTCTC 2 cut(s) 198, 221
BstMBI GATC 3 cut(s) 60, 208, 240
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 108
CaiI CAGNNNCTG 1 cut(s) 43
CsiI ACCWGGT 1 cut(s) 30
CviAII CATG 3 cut(s) 70, 88, 107
CviJI RGCY 1 cut(s) 95
CviKI_1 RGCY 1 cut(s) 95
DdeI CTNAG 3 cut(s) 102, 195, 219
DpnI GATC 3 cut(s) 62, 210, 242
DpnII GATC 3 cut(s) 60, 208, 240
DraIII CACNNNGTG 2 cut(s) 34, 141
Eam1104I CTCTTC 3 cut(s) 16, 75, 219
EarI CTCTTC 3 cut(s) 16, 75, 219
Eco32I GATATC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 255
FaeI CATG 3 cut(s) 73, 91, 110
FaiI YATR 6 cut(s) 22, 26, 71, 89, 108, 186
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 3 cut(s) 69, 87, 106
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 283
GluI GCNGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 173
Hin1II CATG 3 cut(s) 73, 91, 110
HinfI GANTC 3 cut(s) 8, 260, 272
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 4 cut(s) 198, 220, 259, 277
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 37, 87, 110, 188
HpyF3I CTNAG 3 cut(s) 102, 195, 219
Hsp92II CATG 3 cut(s) 73, 91, 110
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 3 cut(s) 60, 208, 240
LpnPI CCDG 5 cut(s) 17, 44, 56, 135, 137
Lsp1109I GCAGC 1 cut(s) 49
MabI ACCWGGT 1 cut(s) 30
MaeI CTAG 1 cut(s) 283
MalI GATC 3 cut(s) 62, 210, 242
MboI GATC 3 cut(s) 60, 208, 240
MboII GAAGA 5 cut(s) 3, 55, 92, 166, 236
MfeI CAATTG 1 cut(s) 236
MluCI AATT 1 cut(s) 236
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 4 cut(s) 142, 172, 214, 274
MspR9I CCNGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 32
NdeII GATC 3 cut(s) 60, 208, 240
NlaIII CATG 3 cut(s) 73, 91, 110
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PfeI GAWTC 2 cut(s) 260, 272
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 43
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 3 cut(s) 60, 208, 240
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 32
SetI ASST 5 cut(s) 33, 45, 97, 124, 134
SexAI ACCWGGT 1 cut(s) 30
SphI GCATGC 1 cut(s) 110
Sse9I AATT 1 cut(s) 236
SspMI CTAG 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 2 cut(s) 177, 211
TasI AATT 1 cut(s) 236
TfiI GAWTC 2 cut(s) 260, 272
TscAI CASTG 1 cut(s) 195
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 9, 162
TspRI CASTG 1 cut(s) 195
Van91I CCANNNNNTGG 1 cut(s) 141
XceI RCATGY 1 cut(s) 110
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.