Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006013

Physical Location & Seq

Genomic Coordinates Forward (+)

4658445 .. 4660777

Gene Structure 2333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G11620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGTGTAACAATTTTCTTGGAAAGCAAGTTAGTCTGATGGTCGAGAATCGAGATCTTGATATTGGTACTGCACCATCTGATAGGTCAGAGATGAGTCCTTCAAGCTTGGCAACGTTGGCATTGGATGATACACATGGTCTAACAATAAACAAGTTGCAGATTCCTAATGATCAGCAAAATCAATTTCATTCTTATCAATGGTCTACTACAACTAATCATATACCTTGTACTCGTGGAGCTCCTACCGTTCAACCAGCAGCTAATGATCAAACCTTTTTCTCCATAGGTACCCATCTAGGAGCTCCTACCGTTCCACCAGGAGCTAATGATCACTGGTTTCCTTATAGTGATCCTGCGTGTACCAATTCTGGAGCTTCTGCCGTTCCACCAGCAGATAATGGTCAATGGTTGCCATATACAGATCCTACGTATAACTATACTGTTGTATATTCAACCGGTGCACCAGCAGCCACTGCTCAATGGCCAACATCTAATGATTTCCTTCCCATAGATACTCGAGCTCCAACTTTTGCAAAAGCACCTACTGCGGCATTTGACCATTTTGCAAATGGTTTTGGAGAAGATATTAATAATAGCAGCCCAAATTTCCAGCCGATGGATCCTTCAACAGCAAAACTACTAACACAACTCGACCACCTGCAACAAGACCCATATGGACAATACCAACTGCCACTGCAGGTTCTAAAAAAACCCTCACTAGAAGAGCTGCGAAAACTTCCATATGAAGTAAACAACGTGCTGCGATATGATGGAAACAACAACGGGATGCAAGGAGTACTAATGAAACCCGAAAAGCCGCCACAAGACCTATATGGACAATGCCAACCGCAACCACAGATCCAACGAAACTTTTCAGTACAAGAGCTGCAAAAACTTCAATATGAAGCAAACAACAACGGGTTGCAATATGATGCACACAACAACGGGCTGCAAGGAGGACTAACGCAACCCGAGAAGCCACTACAAGACCTATATGGAAAATGCCAACAGAATCTCTCAGTAGAAGATCTGCTACCTCTTGAATATGAAGCAAACAACAACGGACTGCAAGGAGGACTAACACAACCCGAGAAGCCATTACAAGACCTATATGGAGAATGCCAACAAAATCTCTCAGTAGAAGATCTGCTAACTCTTGAATATGAAGCAAACAACAACAAACTGCTAGGAGTACCAACGCAACCCGAGAAGCCACTACAAGACCTATATGGAGAATGCCAACAGAATCTCTCAGTAGAAGATCTGCTACCTCTTGAATATGAAGCAAACAACAACGGACTACAAGGAGGACTAACGCAACCCGAGAAGCCACTACAAGACCTATATGGAGAATGCCAACATAATCTCTCAATAGAAGATCTGCTACCTCTTGAATATGAAGCAAACAACAACGGACTGCAAGGAGGACTAACACAACCCGAGAAGCCACTACAAGACCTATATGGAGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

491

Amino Acids

54.32

Weight (kDa)

4.34

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49700 AT1G49700 AT1G49700 AT1G49700 AT2G11620 AT2G11623 AT2G11623 AT2G29605 AT2G29850 AT3G45800 AT3G55240 AT4G07675
fragaria_vesca	FvH4_7g21050
malus_domestica	MD01G1120400.v1.1 MD07G1189600.v1.1
prunus_persica	Prupe.2G227200_v2.0.a1
pyrus_communis	pycom07g17930
rosa_chinensis	RchiOBHm_Chr1g0365441
rosa_multiflora	Rmu_sc0002587.1_g000003 Rmu_sc0007049.1_g000002 Rmu_sc0024541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291230
rosa_rugosa	Rorug01G0322200
rosa_samantha	Rh1AG331000 Rh1CG308900 Rh1DG324000
rosa_wichuraiana	Rw1G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	666
Acc36I	ACCTGC	2 cut(s)	666, 688
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccI	GTMKAC	1 cut(s)	203
AciI	CCGC	3 cut(s)	548, 818, 848
AclI	AACGTT	1 cut(s)	113
AclWI	GGATC	5 cut(s)	344, 416, 614, 627, 853
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	1 cut(s)	604
AfaI	GTAC	7 cut(s)	67, 229, 289, 361, 798, 879, 1194
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgeI	ACCGGT	1 cut(s)	455
AgsI	TTSAA	9 cut(s)	102, 251, 453, 627, 899, 1043, 1160, 1277, 1394
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	9 cut(s)	105, 239, 260, 302, 323, 374, 521, 727, 886
AluI	AGCT	9 cut(s)	105, 239, 260, 302, 323, 374, 521, 727, 886
Alw21I	GWGCWC	4 cut(s)	241, 304, 463, 523
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	5 cut(s)	344, 416, 614, 627, 853
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	6 cut(s)	516, 971, 1088, 1205, 1322, 1439
AoxI	GGCC	1 cut(s)	482
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	7 cut(s)	257, 467, 597, 727, 760, 886, 949
ApoI	RAATTY	1 cut(s)	604
AseI	ATTAAT	1 cut(s)	588
AsiGI	ACCGGT	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	871
Asp718I	GGTACC	1 cut(s)	287
AvaI	CYCGRG	6 cut(s)	516, 971, 1088, 1205, 1322, 1439
BaeGI	GKGCMC	1 cut(s)	463
BalI	TGGCCA	1 cut(s)	484
BamHI	GGATCC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	3 cut(s)	241, 304, 523
BarI	GAAGNNNNNNTAC	6 cut(s)	1017, 1049, 1251, 1283, 1368, 1400
BauI	CACGAG	1 cut(s)	231
Bbv12I	GWGCWC	4 cut(s)	241, 304, 463, 523
BbvI	GCAGC	7 cut(s)	269, 479, 609, 714, 747, 873, 936
BccI	CCATC	5 cut(s)	31, 82, 300, 610, 764
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	318
BclI	TGATCA	3 cut(s)	169, 265, 328
BfaI	CTAG	3 cut(s)	296, 719, 1187
BfmI	CTRYAG	1 cut(s)	695
BfuAI	ACCTGC	2 cut(s)	666, 688
BglII	AGATCT	5 cut(s)	52, 1027, 1144, 1261, 1378
BisI	GCNGC	9 cut(s)	258, 468, 549, 598, 728, 761, 818, 887, 950
BlsI	GCNGC	9 cut(s)	259, 469, 550, 599, 729, 762, 819, 888, 951
BmcAI	AGTACT	1 cut(s)	798
Bme1390I	CCNGG	1 cut(s)	318
BmeT110I	CYCGRG	6 cut(s)	516, 971, 1088, 1205, 1322, 1439
BmiI	GGNNCC	2 cut(s)	289, 621
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	777, 922
BpmI	CTGGAG	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	130, 792
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMII	CTCAG	3 cut(s)	1032, 1149, 1266
BseNI	ACTGG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	7 cut(s)	269, 479, 609, 714, 747, 873, 936
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	484
BshNI	GGYRCC	1 cut(s)	287
BshTI	ACCGGT	1 cut(s)	455
BsiHKAI	GWGCWC	4 cut(s)	241, 304, 463, 523
BsiHKCI	CYCGRG	6 cut(s)	516, 971, 1088, 1205, 1322, 1439
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmI	GAATGC	4 cut(s)	1124, 1241, 1358, 1475
BsnI	GGCC	1 cut(s)	484
BsoBI	CYCGRG	6 cut(s)	516, 971, 1088, 1205, 1322, 1439
Bsp1286I	GDGCHC	4 cut(s)	241, 304, 463, 523
BspACI	CCGC	3 cut(s)	548, 818, 848
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	3 cut(s)	1031, 1148, 1265
BspLI	GGNNCC	2 cut(s)	289, 621
BspMAI	CTGCAG	1 cut(s)	699
BspMI	ACCTGC	2 cut(s)	666, 688
BspPI	GGATC	5 cut(s)	344, 416, 614, 627, 853
BspQI	GCTCTTC	1 cut(s)	717
BspT107I	GGYRCC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	455
BssSI	CACGAG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	247, 310, 442
Bst6I	CTCTTC	1 cut(s)	717
BstAPI	GCANNNNNTGC	2 cut(s)	473, 545
BstBAI	YACGTR	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	1018, 1135, 1252
BstF5I	GGATG	2 cut(s)	130, 792
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 467, 473, 545
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	695
BstSLI	GKGCMC	1 cut(s)	463
BstSNI	TACGTA	1 cut(s)	429
BstV1I	GCAGC	7 cut(s)	269, 479, 609, 714, 747, 873, 936
BstX2I	RGATCY	8 cut(s)	52, 421, 619, 858, 1027, 1144, 1261, 1378
BstYI	RGATCY	8 cut(s)	52, 421, 619, 858, 1027, 1144, 1261, 1378
BsuRI	GGCC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	130, 792
BtsI	GCAGTG	2 cut(s)	471, 692
BtsIMutI	CAGTG	3 cut(s)	331, 471, 692
BveI	ACCTGC	2 cut(s)	666, 688
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	455
Csp6I	GTAC	7 cut(s)	66, 228, 288, 360, 797, 878, 1193
CspAI	ACCGGT	1 cut(s)	455
CviAII	CATG	1 cut(s)	134
CviQI	GTAC	7 cut(s)	66, 228, 288, 360, 797, 878, 1193
DdeI	CTNAG	3 cut(s)	1018, 1135, 1252
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Ecl136II	GAGCTC	3 cut(s)	239, 302, 521
Eco105I	TACGTA	1 cut(s)	429
Eco24I	GRGCYC	3 cut(s)	241, 304, 523
Eco53kI	GAGCTC	3 cut(s)	239, 302, 521
Eco88I	CYCGRG	6 cut(s)	516, 971, 1088, 1205, 1322, 1439
EcoICRI	GAGCTC	3 cut(s)	239, 302, 521
EcoRII	CCWGG	1 cut(s)	316
EcoT38I	GRGCYC	3 cut(s)	241, 304, 523
FaeI	CATG	1 cut(s)	137
FatI	CATG	1 cut(s)	133
FauNDI	CATATG	2 cut(s)	673, 742
FbaI	TGATCA	3 cut(s)	169, 265, 328
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	9 cut(s)	258, 468, 549, 598, 728, 761, 818, 887, 950
FokI	GGATG	2 cut(s)	137, 799
FriOI	GRGCYC	3 cut(s)	241, 304, 523
Fsp4HI	GCNGC	9 cut(s)	258, 468, 549, 598, 728, 761, 818, 887, 950
FspBI	CTAG	3 cut(s)	296, 719, 1187
GluI	GCNGC	9 cut(s)	258, 468, 549, 598, 728, 761, 818, 887, 950
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	5 cut(s)	46, 94, 160, 1012, 1246
HpaII	CCGG	1 cut(s)	456
Hpy166II	GTNNAC	4 cut(s)	204, 360, 461, 751
Hpy188I	TCNGA	3 cut(s)	36, 79, 88
Hpy188III	TCNNGA	8 cut(s)	43, 50, 56, 369, 1040, 1157, 1274, 1391
Hpy8I	GTNNAC	4 cut(s)	204, 360, 461, 751
HpyAV	CCTTC	3 cut(s)	108, 512, 633
HpyCH4III	ACNGT	3 cut(s)	247, 310, 442
HpyCH4IV	ACGT	3 cut(s)	113, 428, 756
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 467, 473, 545
HpyF3I	CTNAG	3 cut(s)	1018, 1135, 1252
HpySE526I	ACGT	3 cut(s)	113, 428, 756
Hsp92II	CATG	1 cut(s)	137
KpnI	GGTACC	1 cut(s)	291
Ksp22I	TGATCA	3 cut(s)	169, 265, 328
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	7 cut(s)	236, 244, 299, 307, 320, 371, 526
Lsp1109I	GCAGC	7 cut(s)	269, 479, 609, 714, 747, 873, 936
LweI	GCATC	2 cut(s)	777, 922
MaeI	CTAG	3 cut(s)	296, 719, 1187
MaeII	ACGT	3 cut(s)	113, 428, 756
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	6 cut(s)	593, 734, 1037, 1154, 1271, 1388
MflI	RGATCY	8 cut(s)	52, 421, 619, 858, 1027, 1144, 1261, 1378
MhlI	GDGCHC	4 cut(s)	241, 304, 463, 523
MlsI	TGGCCA	1 cut(s)	484
MluCI	AATT	4 cut(s)	10, 182, 364, 604
MluNI	TGGCCA	1 cut(s)	484
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	2 cut(s)	548, 886
MnlI	CCTC	8 cut(s)	724, 950, 1047, 1067, 1281, 1301, 1398, 1418
Mox20I	TGGCCA	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	871
MscI	TGGCCA	1 cut(s)	484
MseI	TTAA	1 cut(s)	588
Msp20I	TGGCCA	1 cut(s)	484
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	4 cut(s)	1124, 1241, 1358, 1475
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	4 cut(s)	116, 467, 473, 545
NdeI	CATATG	2 cut(s)	673, 742
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	2 cut(s)	289, 621
PaeR7I	CTCGAG	1 cut(s)	516
PaqCI	CACCTGC	1 cut(s)	666
PciSI	GCTCTTC	1 cut(s)	717
PctI	GAATGC	4 cut(s)	1124, 1241, 1358, 1475
PdmI	GAANNNNTTC	1 cut(s)	871
PfeI	GAWTC	4 cut(s)	46, 160, 1012, 1246
PflMI	CCANNNNNTGG	1 cut(s)	616
PinAI	ACCGGT	1 cut(s)	455
PkrI	GCNGC	9 cut(s)	259, 469, 550, 599, 729, 762, 819, 888, 951
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Ppu21I	YACGTR	1 cut(s)	429
PshBI	ATTAAT	1 cut(s)	588
Psp124BI	GAGCTC	3 cut(s)	241, 304, 523
Psp1406I	AACGTT	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	289, 621
PspXI	VCTCGAGB	1 cut(s)	516
PstI	CTGCAG	1 cut(s)	699
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	8 cut(s)	52, 421, 619, 858, 1027, 1144, 1261, 1378
RsaI	GTAC	7 cut(s)	67, 229, 289, 361, 798, 879, 1194
RsaNI	GTAC	7 cut(s)	66, 228, 288, 360, 797, 878, 1193
SacI	GAGCTC	3 cut(s)	241, 304, 523
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	9 cut(s)	258, 468, 549, 598, 728, 761, 818, 887, 950
ScaI	AGTACT	1 cut(s)	798
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	4 cut(s)	241, 304, 463, 523
SfaNI	GCATC	2 cut(s)	777, 922
SfcI	CTRYAG	1 cut(s)	695
Sfr274I	CTCGAG	1 cut(s)	516
SlaI	CTCGAG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
SnaBI	TACGTA	1 cut(s)	429
Sse9I	AATT	4 cut(s)	10, 182, 364, 604
SsiI	CCGC	3 cut(s)	548, 818, 848
SspMI	CTAG	3 cut(s)	296, 719, 1187
SstI	GAGCTC	3 cut(s)	241, 304, 523
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	3 cut(s)	247, 310, 442
TaiI	ACGT	3 cut(s)	116, 431, 759
TaqI	TCGA	4 cut(s)	42, 49, 517, 651
TasI	AATT	4 cut(s)	10, 182, 364, 604
TatI	WGTACW	3 cut(s)	227, 796, 877
TauI	GCSGC	2 cut(s)	551, 820
TfiI	GAWTC	4 cut(s)	46, 160, 1012, 1246
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	3 cut(s)	338, 478, 699
TseI	GCWGC	7 cut(s)	257, 467, 597, 727, 760, 886, 949
TspDTI	ATGAA	8 cut(s)	176, 759, 818, 918, 1062, 1179, 1296, 1413
TspGWI	ACGGA	3 cut(s)	1077, 1311, 1428
TspRI	CASTG	3 cut(s)	338, 478, 699
Van91I	CCANNNNNTGG	1 cut(s)	616
VneI	GTGCAC	1 cut(s)	459
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	566
XhoI	CTCGAG	1 cut(s)	516
XmiI	GTMKAC	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	871
XspI	CTAG	3 cut(s)	296, 719, 1187
ZrmI	AGTACT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.