AT2G29605

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006013
Physical Location & Seq
Reverse (-)
12657909 .. 12660087
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29605.1

Sequence Viewer

Length: 1206 bp
ATGAGCGAACCATGTCGTCTCAATCTTCTCTGCAGCTGCAATCGTCGTAACGTTTCAGAGACCATAGACACTATAAAGAACATAATCGCGACATGTATCCGCAAGTACATGAGTCTGGAAGAAACAGTGAATTATATGCAGGAAAATCACAAGATTAGTCACCATCTCACCAAACCAATATGGGAGCAGCTTCAGAAAGAGAATGCAGATTTTTTCAACAAGTACCACTTAATACGCGAATTAGCGCGTCAAATAAAATTGTTTAATAGTTTTCTTGGAAAGCAAGTTTCTCTGATGCTCGAGAATGGAGATTTTGATATTAGTACTGCAACATCTGATAGGTCAGAGTTGAGCACTTTAAACATGGGAATGTCGGCATTGGATGATACAAATGGTCTAACAGTAAACCAGTTGCCGATTCCTAATGGTCAGCAAAATCATATATGGTCTACACCAAATAATCATGCTTGTACCAATCTTGGAGCTTCTACCATTCCACCAGCAGCTAATGATCAATGGTTTCCTTATAAGGATCCTGCGTGTTCCCATCTTGGAGCTCCTATCGTTCCACCAGAAGCTTATGGTCAATTGTTGCCATATACTGATCTTGCGTATTACTATCCAGTACTATATTCAACCGCTGCACCAGCAGCTACTACTCAATGGCCGACATCTACTGATTTTGCTTATACTGGAGGTCCAACTCTTCCAAAAGCACCTACTGCGGCATTTGATCATTTTAGAGATGGTTTCGGAGAAGATATTGACAATAGCAGCCCAAATTTCCAGCAGATGGATCCTTTAGCAGCCGCACTACAAACGCTACCCGATGACATGCTACAAGAGCTATATCAACAATGCCAACGGCAATCGCAGCTTCAACAGAACTTCTCACTAGAAGAGCAGCAAAGACTTCAAAGTAAAGTAAACAACAACGGGCTTCAAGGAGTAGTAAGGCCACCCGAAAAGCCGCCACAAGACCTATATGGACAATGTCAACCGCAATCGCAGCTGCAACAGAACCTCTCAGTAGAAGAGCTGCAAAGACTTGAAGTTGAATATCGAGCAAACAGCAACGAGCTGCAAGGAGTAATACCGCAGCAACAACATCATCAGGAACAAGAAGCAATGCAGACACAAGGAGATCCACTGAATCGAATACCTGTTCAATCTGAAGCTTCAAACCATTCAGATAGTGGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

401

Amino Acids

45.18

Weight (kDa)

4.96

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 25 - 76 8e-20 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
AccB7I CCANNNNNTGG 1 cut(s) 793
AccI GTMKAC 1 cut(s) 449
AccII CGCG 3 cut(s) 89, 237, 247
AciI CCGC 7 cut(s) 100, 639, 725, 810, 971, 1001, 1097
AclI AACGTT 1 cut(s) 51
AclWI GGATC 5 cut(s) 527, 540, 791, 804, 1139
AcoI YGGCCR 1 cut(s) 665
AcsI RAATTY 1 cut(s) 781
AcuI CTGAAG 2 cut(s) 176, 1194
AfaI GTAC 5 cut(s) 107, 224, 325, 472, 627
AfiI CCNNNNNNNGG 1 cut(s) 793
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 9 cut(s) 217, 636, 881, 917, 944, 1052, 1058, 1169, 1182
Alw21I GWGCWC 2 cut(s) 356, 559
Alw26I GTCTC 2 cut(s) 23, 53
AlwI GGATC 5 cut(s) 527, 540, 791, 804, 1139
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 2 cut(s) 665, 956
ApoI RAATTY 1 cut(s) 781
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 698
AsuHPI GGTGA 2 cut(s) 152, 160
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 1 cut(s) 698
BamHI GGATCC 2 cut(s) 532, 796
BanII GRGCYC 1 cut(s) 559
Bbv12I GWGCWC 2 cut(s) 356, 559
BccI CCATC 4 cut(s) 171, 555, 740, 787
BceAI ACGGC 1 cut(s) 881
BciVI GTATCC 1 cut(s) 107
BclI TGATCA 2 cut(s) 511, 733
BcoDI GTCTC 2 cut(s) 23, 53
BfaI CTAG 1 cut(s) 896
BfmI CTRYAG 1 cut(s) 31
BfuI GTATCC 1 cut(s) 107
BmcAI AGTACT 2 cut(s) 325, 627
Bme18I GGWCC 1 cut(s) 698
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 698
BmiI GGNNCC 2 cut(s) 534, 798
BmsI GCATC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 714
BsaI GGTCTC 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse1I ACTGG 3 cut(s) 409, 623, 697
Bse3DI GCAATG 1 cut(s) 1134
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMI GCAATG 1 cut(s) 1134
BseMII CTCAG 1 cut(s) 1041
BseNI ACTGG 3 cut(s) 409, 623, 697
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 3 cut(s) 89, 237, 247
BshFI GGCC 2 cut(s) 667, 958
BsiHKAI GWGCWC 2 cut(s) 356, 559
BsiHKCI CYCGRG 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 2 cut(s) 23, 53
BsmBI CGTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 667, 958
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 356, 559
Bsp143I GATC 6 cut(s) 511, 532, 604, 733, 796, 1144
Bsp68I TCGCGA 1 cut(s) 89
BspACI CCGC 7 cut(s) 100, 639, 725, 810, 971, 1001, 1097
BspANI GGCC 2 cut(s) 667, 958
BspCNI CTCAG 1 cut(s) 1040
BspFNI CGCG 3 cut(s) 89, 237, 247
BspLI GGNNCC 2 cut(s) 534, 798
BspMAI CTGCAG 1 cut(s) 35
BspPI GGATC 5 cut(s) 527, 540, 791, 804, 1139
BspQI GCTCTTC 2 cut(s) 894, 1029
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 1134
BsrI ACTGG 3 cut(s) 409, 623, 697
BssMI GATC 6 cut(s) 511, 532, 604, 733, 796, 1144
Bst4CI ACNGT 2 cut(s) 127, 403
Bst6I CTCTTC 3 cut(s) 711, 894, 1029
BstAPI GCANNNNNTGC 1 cut(s) 722
BstDEI CTNAG 1 cut(s) 1027
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 3 cut(s) 89, 237, 247
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 6 cut(s) 514, 535, 607, 736, 799, 1147
BstMAI GTCTC 2 cut(s) 23, 53
BstMBI GATC 6 cut(s) 511, 532, 604, 733, 796, 1144
BstMWI GCNNNNNNNGC 6 cut(s) 647, 650, 722, 844, 874, 1009
BstNSI RCATGY 2 cut(s) 96, 838
BstSFI CTRYAG 1 cut(s) 31
BstUI CGCG 3 cut(s) 89, 237, 247
BstX2I RGATCY 3 cut(s) 532, 796, 1144
BstYI RGATCY 3 cut(s) 532, 796, 1144
BsuI GTATCC 1 cut(s) 107
BsuRI GGCC 2 cut(s) 667, 958
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 132, 1148
BtuMI TCGCGA 1 cut(s) 89
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 698
CseI GACGC 1 cut(s) 236
Csp6I GTAC 5 cut(s) 106, 223, 324, 471, 626
CviAII CATG 6 cut(s) 12, 93, 109, 364, 464, 835
CviQI GTAC 5 cut(s) 106, 223, 324, 471, 626
DdeI CTNAG 1 cut(s) 1027
DpnI GATC 6 cut(s) 513, 534, 606, 735, 798, 1146
DpnII GATC 6 cut(s) 511, 532, 604, 733, 796, 1144
DraI TTTAAA 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 665
Eam1104I CTCTTC 3 cut(s) 711, 894, 1029
EarI CTCTTC 3 cut(s) 711, 894, 1029
Ecl136II GAGCTC 1 cut(s) 557
Eco24I GRGCYC 1 cut(s) 559
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 698
Eco53kI GAGCTC 1 cut(s) 557
Eco57I CTGAAG 2 cut(s) 176, 1194
Eco88I CYCGRG 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 557
EcoT38I GRGCYC 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 6 cut(s) 15, 96, 112, 367, 467, 838
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 6 cut(s) 11, 92, 108, 363, 463, 834
FbaI TGATCA 2 cut(s) 511, 733
FblI GTMKAC 1 cut(s) 449
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 559
FspBI CTAG 1 cut(s) 896
GlaI GCGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 2 cut(s) 667, 958
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 247
Hin1II CATG 6 cut(s) 15, 96, 112, 367, 467, 838
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 998
HindII GTYRAC 1 cut(s) 998
HindIII AAGCTT 2 cut(s) 576, 1176
HinfI GANTC 3 cut(s) 112, 418, 1153
HphI GGTGA 2 cut(s) 152, 160
Hpy166II GTNNAC 4 cut(s) 406, 450, 928, 998
Hpy188I TCNGA 8 cut(s) 58, 195, 294, 337, 346, 755, 1174, 1192
Hpy188III TCNNGA 4 cut(s) 88, 116, 301, 1115
Hpy8I GTNNAC 4 cut(s) 406, 450, 928, 998
Hpy99I CGWCG 1 cut(s) 48
HpyCH4III ACNGT 2 cut(s) 127, 403
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 6 cut(s) 647, 650, 722, 844, 874, 1009
HpyF3I CTNAG 1 cut(s) 1027
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 6 cut(s) 15, 96, 112, 367, 467, 838
HspAI GCGC 1 cut(s) 245
Ksp22I TGATCA 2 cut(s) 511, 733
Kzo9I GATC 6 cut(s) 511, 532, 604, 733, 796, 1144
LguI GCTCTTC 2 cut(s) 894, 1029
LmnI GCTCC 4 cut(s) 184, 482, 554, 562
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 896
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 47, 158
MalI GATC 6 cut(s) 513, 534, 606, 735, 798, 1146
MboI GATC 6 cut(s) 511, 532, 604, 733, 796, 1144
MboII GAAGA 6 cut(s) 17, 131, 698, 770, 911, 1046
MfeI CAATTG 1 cut(s) 587
MflI RGATCY 3 cut(s) 532, 796, 1144
MhlI GDGCHC 2 cut(s) 356, 559
MluCI AATT 5 cut(s) 130, 239, 257, 587, 781
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 725
MnlI CCTC 2 cut(s) 689, 1034
MseI TTAA 3 cut(s) 230, 264, 359
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 3 cut(s) 36, 641, 1012
MunI CAATTG 1 cut(s) 587
Mva1269I GAATGC 1 cut(s) 208
MvnI CGCG 3 cut(s) 89, 237, 247
MwoI GCNNNNNNNGC 6 cut(s) 647, 650, 722, 844, 874, 1009
NdeII GATC 6 cut(s) 511, 532, 604, 733, 796, 1144
NlaIII CATG 6 cut(s) 15, 96, 112, 367, 467, 838
NlaIV GGNNCC 2 cut(s) 534, 798
NmuCI GTSAC 1 cut(s) 158
NruI TCGCGA 1 cut(s) 89
NspI RCATGY 2 cut(s) 96, 838
PaeR7I CTCGAG 1 cut(s) 299
PciI ACATGT 1 cut(s) 92
PciSI GCTCTTC 2 cut(s) 894, 1029
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 418, 1153
PflFI GACNNNGTC 1 cut(s) 993
PflMI CCANNNNNTGG 1 cut(s) 793
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
PscI ACATGT 1 cut(s) 92
PsiI TTATAA 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 559
Psp1406I AACGTT 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 534, 798
PspPI GGNCC 1 cut(s) 698
PstI CTGCAG 1 cut(s) 35
PsuI RGATCY 3 cut(s) 532, 796, 1144
PsyI GACNNNGTC 1 cut(s) 993
PvuII CAGCTG 2 cut(s) 36, 1012
RruI TCGCGA 1 cut(s) 89
RsaI GTAC 5 cut(s) 107, 224, 325, 472, 627
RsaNI GTAC 5 cut(s) 106, 223, 324, 471, 626
RseI CAYNNNNRTG 1 cut(s) 368
SacI GAGCTC 1 cut(s) 559
SapI GCTCTTC 2 cut(s) 894, 1029
SaqAI TTAA 3 cut(s) 230, 264, 359
Sau3AI GATC 6 cut(s) 511, 532, 604, 733, 796, 1144
Sau96I GGNCC 1 cut(s) 698
ScaI AGTACT 2 cut(s) 325, 627
SchI GAGTC 1 cut(s) 121
SduI GDGCHC 2 cut(s) 356, 559
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 31
Sfr274I CTCGAG 1 cut(s) 299
SinI GGWCC 1 cut(s) 698
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 5 cut(s) 130, 239, 257, 587, 781
SsiI CCGC 7 cut(s) 100, 639, 725, 810, 971, 1001, 1097
SspMI CTAG 1 cut(s) 896
SstI GAGCTC 1 cut(s) 559
TaaI ACNGT 2 cut(s) 127, 403
TaiI ACGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 300, 1063, 1156
TasI AATT 5 cut(s) 130, 239, 257, 587, 781
TatI WGTACW 3 cut(s) 105, 323, 625
TauI GCSGC 3 cut(s) 728, 812, 973
TfiI GAWTC 2 cut(s) 418, 1153
Tru1I TTAA 3 cut(s) 230, 264, 359
Tru9I TTAA 3 cut(s) 230, 264, 359
TscAI CASTG 2 cut(s) 132, 1155
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspRI CASTG 2 cut(s) 132, 1155
Tth111I GACNNNGTC 1 cut(s) 993
Van91I CCANNNNNTGG 1 cut(s) 793
VpaK11BI GGWCC 1 cut(s) 698
XapI RAATTY 1 cut(s) 781
XceI RCATGY 2 cut(s) 96, 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 1193
XhoI CTCGAG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 449
XspI CTAG 1 cut(s) 896
ZrmI AGTACT 2 cut(s) 325, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.