Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006013

Physical Location & Seq

Genomic Coordinates Forward (+)

12734725 .. 12736394

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAGATCTTGATATTAGTACTGCAACATCACTTTAAACATGCAATGTCGGAATTGGATGATACAAATGGTCTAACAGTAAACCAGTCGCAGAATCCTAATGATCAGCAATATCAATTTCATTCTTGTCGGTGGTCAACTACAACTAATCATATACCTTTAAACCAGTTGCCGATTCCTAATGGTCAGCAAAATCATCTATGGTCTACACCAAATAATCATGCTTGTACCAATCTTGGAGCTTCTACCATTCCACCAGCAGCTAACGATCAATGGTTTCCTTATAAGGATCCTGCGTGTTCCAGTCTTGGAGCTCCTACCGTTCCACCAGAAGCTTATGGTCAATTGTTGCCATATACTGATCCTGCGTATTACTATCCAGTACTATATTCAACCGCTGCACCAGCAGCTACTATTCAATGGCCGACATCTACTGATTTTGCTTATCCTTTAGCAGCCGCACTACAAACGCTACCCGATGACATGCTACAAGAGCTATATCAACAATGCCAACGGCAATCGCAGCTTCAACAGAACTTCTCACTAGAAGAGCAGCAAAGACTTCAAAGTAAAGTAAACAACAACGGGCTTCAAGGAGTAGTAAGGCCACCCGAAAAGCCGCCACAAGACCTATATGGACAATGTCAACCGCAATCGCAGCTGCAACAGAACCTCTCAGTAGAAGAGCTGCAAAGACTTGAAGTTAAATATCGAGCAAACAGCAACGAGCTGCAAGGAGTAATACCGCAGCAACAGCATCATCAGGAACAAGAAGCAATGCAGACACAAGGAGATCCACTGAATCGAATACCTGTTCAATCTGAAGCTTCAAACCATTCAGATAGTGGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

284

Amino Acids

32.0

Weight (kDa)

5.04

Isoelectric Point (pI)

64.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49700 AT1G49700 AT1G49700 AT1G49700 AT2G11620 AT2G11623 AT2G11623 AT2G29605 AT2G29850 AT3G45800 AT3G55240 AT4G07675
fragaria_vesca	FvH4_7g21050
malus_domestica	MD01G1120400.v1.1 MD07G1189600.v1.1
prunus_persica	Prupe.2G227200_v2.0.a1
pyrus_communis	pycom07g17930
rosa_chinensis	RchiOBHm_Chr1g0365441
rosa_multiflora	Rmu_sc0002587.1_g000003 Rmu_sc0007049.1_g000002 Rmu_sc0024541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291230
rosa_rugosa	Rorug01G0322200
rosa_samantha	Rh1AG331000 Rh1CG308900 Rh1DG324000
rosa_wichuraiana	Rw1G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	5 cut(s)	396, 459, 620, 650, 746
AclWI	GGATC	4 cut(s)	284, 297, 356, 788
AcoI	YGGCCR	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	843
AfaI	GTAC	3 cut(s)	21, 229, 384
AgsI	TTSAA	8 cut(s)	393, 419, 530, 566, 593, 701, 818, 831
Alw21I	GWGCWC	1 cut(s)	316
AlwI	GGATC	4 cut(s)	284, 297, 356, 788
AoxI	GGCC	2 cut(s)	422, 605
BamHI	GGATCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	530
BclI	TGATCA	1 cut(s)	103
BfaI	CTAG	1 cut(s)	545
BglII	AGATCT	1 cut(s)	6
BmcAI	AGTACT	2 cut(s)	21, 384
BmiI	GGNNCC	1 cut(s)	291
BmsI	GCATC	1 cut(s)	766
Bse1I	ACTGG	4 cut(s)	85, 166, 303, 380
Bse3DI	GCAATG	2 cut(s)	51, 783
BseGI	GGATG	1 cut(s)	64
BseMI	GCAATG	2 cut(s)	51, 783
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	4 cut(s)	85, 166, 303, 380
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	424, 607
BsiHKAI	GWGCWC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	424, 607
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	6 cut(s)	6, 103, 268, 289, 361, 793
BspACI	CCGC	5 cut(s)	396, 459, 620, 650, 746
BspANI	GGCC	2 cut(s)	424, 607
BspCNI	CTCAG	1 cut(s)	689
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	4 cut(s)	284, 297, 356, 788
BspQI	GCTCTTC	2 cut(s)	543, 678
BsrDI	GCAATG	2 cut(s)	51, 783
BsrI	ACTGG	4 cut(s)	85, 166, 303, 380
BssMI	GATC	6 cut(s)	6, 103, 268, 289, 361, 793
Bst4CI	ACNGT	2 cut(s)	79, 322
Bst6I	CTCTTC	2 cut(s)	543, 678
BstDEI	CTNAG	1 cut(s)	676
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	6 cut(s)	9, 106, 271, 292, 364, 796
BstMBI	GATC	6 cut(s)	6, 103, 268, 289, 361, 793
BstMWI	GCNNNNNNNGC	6 cut(s)	404, 407, 493, 523, 658, 754
BstNSI	RCATGY	2 cut(s)	44, 487
BstX2I	RGATCY	3 cut(s)	6, 289, 793
BstYI	RGATCY	3 cut(s)	6, 289, 793
BsuRI	GGCC	2 cut(s)	424, 607
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	797
Csp6I	GTAC	3 cut(s)	20, 228, 383
CviAII	CATG	3 cut(s)	41, 221, 484
CviQI	GTAC	3 cut(s)	20, 228, 383
DdeI	CTNAG	1 cut(s)	676
DpnI	GATC	6 cut(s)	8, 105, 270, 291, 363, 795
DpnII	GATC	6 cut(s)	6, 103, 268, 289, 361, 793
DraI	TTTAAA	2 cut(s)	37, 162
EaeI	YGGCCR	1 cut(s)	422
Eam1104I	CTCTTC	2 cut(s)	543, 678
EarI	CTCTTC	2 cut(s)	543, 678
Ecl136II	GAGCTC	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	843
EcoICRI	GAGCTC	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	316
FaeI	CATG	3 cut(s)	44, 224, 487
FatI	CATG	3 cut(s)	40, 220, 483
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	206
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	316
FspBI	CTAG	1 cut(s)	545
HaeIII	GGCC	2 cut(s)	424, 607
Hin1II	CATG	3 cut(s)	44, 224, 487
HincII	GTYRAC	2 cut(s)	138, 647
HindII	GTYRAC	2 cut(s)	138, 647
HindIII	AAGCTT	2 cut(s)	333, 825
HinfI	GANTC	3 cut(s)	94, 175, 802
Hpy166II	GTNNAC	5 cut(s)	82, 138, 207, 577, 647
Hpy188I	TCNGA	3 cut(s)	52, 823, 841
Hpy188III	TCNNGA	2 cut(s)	10, 764
Hpy8I	GTNNAC	5 cut(s)	82, 138, 207, 577, 647
HpyCH4III	ACNGT	2 cut(s)	79, 322
HpyCH4V	TGCA	7 cut(s)	25, 44, 401, 664, 691, 733, 781
HpyF10VI	GCNNNNNNNGC	6 cut(s)	404, 407, 493, 523, 658, 754
HpyF3I	CTNAG	1 cut(s)	676
Hsp92II	CATG	3 cut(s)	44, 224, 487
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	6 cut(s)	6, 103, 268, 289, 361, 793
LguI	GCTCTTC	2 cut(s)	543, 678
LmnI	GCTCC	3 cut(s)	239, 311, 319
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	1 cut(s)	545
MalI	GATC	6 cut(s)	8, 105, 270, 291, 363, 795
MboI	GATC	6 cut(s)	6, 103, 268, 289, 361, 793
MboII	GAAGA	2 cut(s)	560, 695
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	3 cut(s)	6, 289, 793
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	53, 116, 344
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	1 cut(s)	683
MseI	TTAA	3 cut(s)	36, 161, 705
MspA1I	CMGCKG	2 cut(s)	398, 661
MunI	CAATTG	1 cut(s)	344
MwoI	GCNNNNNNNGC	6 cut(s)	404, 407, 493, 523, 658, 754
NdeII	GATC	6 cut(s)	6, 103, 268, 289, 361, 793
NlaIII	CATG	3 cut(s)	44, 224, 487
NlaIV	GGNNCC	1 cut(s)	291
NspI	RCATGY	2 cut(s)	44, 487
PciSI	GCTCTTC	2 cut(s)	543, 678
PfeI	GAWTC	3 cut(s)	94, 175, 802
PflFI	GACNNNGTC	1 cut(s)	642
PsiI	TTATAA	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	291
PsuI	RGATCY	3 cut(s)	6, 289, 793
PsyI	GACNNNGTC	1 cut(s)	642
PvuII	CAGCTG	1 cut(s)	661
RsaI	GTAC	3 cut(s)	21, 229, 384
RsaNI	GTAC	3 cut(s)	20, 228, 383
SacI	GAGCTC	1 cut(s)	316
SapI	GCTCTTC	2 cut(s)	543, 678
SaqAI	TTAA	3 cut(s)	36, 161, 705
Sau3AI	GATC	6 cut(s)	6, 103, 268, 289, 361, 793
ScaI	AGTACT	2 cut(s)	21, 384
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	1 cut(s)	766
Sse9I	AATT	3 cut(s)	53, 116, 344
SsiI	CCGC	5 cut(s)	396, 459, 620, 650, 746
SspMI	CTAG	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	79, 322
TaqI	TCGA	2 cut(s)	712, 805
TasI	AATT	3 cut(s)	53, 116, 344
TatI	WGTACW	2 cut(s)	19, 382
TauI	GCSGC	2 cut(s)	461, 622
TfiI	GAWTC	3 cut(s)	94, 175, 802
Tru1I	TTAA	3 cut(s)	36, 161, 705
Tru9I	TTAA	3 cut(s)	36, 161, 705
TscAI	CASTG	1 cut(s)	804
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	804
Tth111I	GACNNNGTC	1 cut(s)	642
XceI	RCATGY	2 cut(s)	44, 487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	1 cut(s)	545
ZrmI	AGTACT	2 cut(s)	21, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.