Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006013

Physical Location & Seq

Genomic Coordinates Reverse (-)

16829482 .. 16831134

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAGTCCTTCAAGCTTGGCAACGTTGGCATTGGATGATACACCTGGTCTAACAGTAAACAAGTTGCAGATTCCTAATGATCATCAAAATCAATTTCATTCTTATCAATGGTCTACTACAACTAATCATATACCTTTAAACCAATTGCCGATTCCAAATGGTCAACAAAATCATCTTCATCAAAACCAATGGTCTACACCAAATCATCAAGCTTGTACTCTTGGAGCTCCTACCGTTCAACCAGCAGCTAATGATCAAACCTTTTTCTCCATAGGTACCAATCTGGGAGCTCCTACCGTTCCACCAGGAGCTAATGATCACTGGTTTCCTTATAGTGATCCTGCGTGTACCAATCTTGGAGCTCCTGCCGTTCCACCAGAAGCTAATAGTCAATGGTTGCCATATACTGATCATGCGTATAACTATCCTGTTGTATATTCAACCGGTGCACCAGCAGCCACTGCTCAATGGCCAACATCTAATGATTTCCTTCCCATAGATACTGGAGCTCCAACTTTTGCAAAAGTACCTACTGCGGCATTTGACCATTTTGCAAATGGTTTTGGAGAAGATATTAACAATAGCAGCCCAAATTTCCAGCCGATGGATCCTTCAACAGCAAAACTACTAACACAACTCGACCACCTGCAACAAGACCCATATGGACAATACCAACTGCCACTGCAGGTTCTAAAAAAACCCTCACTAGAAGAGCTGCGAAAACTTCCATATGAAGTAGACAACGTGCTGCGATATGATGGAAACAACAACGGGCTGCAAGGAGAACTAATGAAACCCGAAAAGCCGCCACAAGACCTATATGGACAATGCCAACCGCAACCGCAGATCCAACAAAACCTTCAATATGAAGCAAACAACAACGGGTTGCAATATGATGAACACAACAACTGGCTGCAAGGAGTACTAACGCAACCCGAGAAGCCACTACAAGACCTATATGGAGAATGCCAACAGAATCTCTCAGTAGAAGATCTGCTAACTCTTGTATATGAAGCAAACAACAACGAACTGCTAGGAGTAATACCGCAGCAACATCGTTATCATCAGGAAAAAGAGACAATGCAGACACAAGGAGATCCACTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

369

Amino Acids

41.12

Weight (kDa)

4.59

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49700 AT1G49700 AT1G49700 AT1G49700 AT2G11620 AT2G11623 AT2G11623 AT2G29605 AT2G29850 AT3G45800 AT3G55240 AT4G07675
fragaria_vesca	FvH4_7g21050
malus_domestica	MD01G1120400.v1.1 MD07G1189600.v1.1
prunus_persica	Prupe.2G227200_v2.0.a1
pyrus_communis	pycom07g17930
rosa_chinensis	RchiOBHm_Chr1g0365441
rosa_multiflora	Rmu_sc0002587.1_g000003 Rmu_sc0007049.1_g000002 Rmu_sc0024541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291230
rosa_rugosa	Rorug01G0322200
rosa_samantha	Rh1AG331000 Rh1CG308900 Rh1DG324000
rosa_wichuraiana	Rw1G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	654
Acc36I	ACCTGC	2 cut(s)	654, 676
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	604
AccI	GTMKAC	3 cut(s)	113, 194, 738
AciI	CCGC	5 cut(s)	536, 806, 836, 842, 1046
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	5 cut(s)	332, 602, 615, 841, 1091
AcoI	YGGCCR	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	592
AfaI	GTAC	5 cut(s)	217, 277, 349, 528, 924
AfiI	CCNNNNNNNGG	1 cut(s)	604
AgeI	ACCGGT	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	12, 239, 441, 615, 863
AjnI	CCWGG	2 cut(s)	43, 304
AjuI	GAANNNNNNNTTGG	4 cut(s)	135, 167, 843, 875
Alw21I	GWGCWC	5 cut(s)	229, 292, 364, 451, 511
Alw26I	GTCTC	1 cut(s)	1070
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	5 cut(s)	332, 602, 615, 841, 1091
AlwNI	CAGNNNCTG	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	935
AoxI	GGCC	1 cut(s)	470
ApaLI	GTGCAC	1 cut(s)	447
ApeKI	GCWGC	8 cut(s)	245, 455, 585, 715, 748, 775, 913, 1048
ApoI	RAATTY	1 cut(s)	592
AsiGI	ACCGGT	1 cut(s)	443
Asp718I	GGTACC	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	935
BaeGI	GKGCMC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	472
BamHI	GGATCC	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	4 cut(s)	229, 292, 364, 511
Bbv12I	GWGCWC	5 cut(s)	229, 292, 364, 451, 511
BbvI	GCAGC	8 cut(s)	257, 467, 597, 702, 735, 762, 900, 1060
BccI	CCATC	2 cut(s)	598, 752
BceAI	ACGGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	1037, 1071
BciT130I	CCWGG	2 cut(s)	45, 306
BclI	TGATCA	4 cut(s)	79, 253, 316, 409
BcoDI	GTCTC	1 cut(s)	1070
BfaI	CTAG	2 cut(s)	707, 1034
BfmI	CTRYAG	1 cut(s)	683
BfuAI	ACCTGC	2 cut(s)	654, 676
BglII	AGATCT	1 cut(s)	991
BmcAI	AGTACT	1 cut(s)	924
Bme1390I	CCNGG	2 cut(s)	45, 306
BmeT110I	CYCGRG	1 cut(s)	935
BmiI	GGNNCC	2 cut(s)	277, 609
BmrFI	CCNGG	2 cut(s)	45, 306
BpmI	CTGGAG	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	326, 508, 914
BseBI	CCWGG	2 cut(s)	45, 306
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMII	CTCAG	1 cut(s)	996
BseNI	ACTGG	3 cut(s)	326, 508, 914
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	8 cut(s)	257, 467, 597, 702, 735, 762, 900, 1060
BshFI	GGCC	1 cut(s)	472
BshNI	GGYRCC	1 cut(s)	275
BshTI	ACCGGT	1 cut(s)	443
BsiHKAI	GWGCWC	5 cut(s)	229, 292, 364, 451, 511
BsiHKCI	CYCGRG	1 cut(s)	935
BsiSI	CCGG	1 cut(s)	444
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	1 cut(s)	1070
BsmI	GAATGC	1 cut(s)	971
BsnI	GGCC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	935
Bsp1286I	GDGCHC	5 cut(s)	229, 292, 364, 451, 511
Bsp143I	GATC	9 cut(s)	79, 253, 316, 337, 409, 607, 846, 991, 1096
BspACI	CCGC	5 cut(s)	536, 806, 836, 842, 1046
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	995
BspLI	GGNNCC	2 cut(s)	277, 609
BspMAI	CTGCAG	1 cut(s)	687
BspMI	ACCTGC	2 cut(s)	654, 676
BspPI	GGATC	5 cut(s)	332, 602, 615, 841, 1091
BspQI	GCTCTTC	1 cut(s)	705
BspT107I	GGYRCC	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	326, 508, 914
BssAI	RCCGGY	1 cut(s)	443
BssMI	GATC	9 cut(s)	79, 253, 316, 337, 409, 607, 846, 991, 1096
Bst2UI	CCWGG	2 cut(s)	45, 306
Bst4CI	ACNGT	3 cut(s)	55, 235, 298
Bst6I	CTCTTC	1 cut(s)	705
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstDEI	CTNAG	1 cut(s)	982
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	9 cut(s)	82, 256, 319, 340, 412, 610, 849, 994, 1099
BstMAI	GTCTC	1 cut(s)	1070
BstMBI	GATC	9 cut(s)	79, 253, 316, 337, 409, 607, 846, 991, 1096
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 455, 461
BstNI	CCWGG	2 cut(s)	45, 306
BstSCI	CCNGG	2 cut(s)	43, 304
BstSFI	CTRYAG	1 cut(s)	683
BstSLI	GKGCMC	1 cut(s)	451
BstV1I	GCAGC	8 cut(s)	257, 467, 597, 702, 735, 762, 900, 1060
BstX2I	RGATCY	4 cut(s)	607, 846, 991, 1096
BstYI	RGATCY	4 cut(s)	607, 846, 991, 1096
BsuRI	GGCC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	2 cut(s)	459, 680
BtsIMutI	CAGTG	4 cut(s)	319, 459, 680, 1100
BveI	ACCTGC	2 cut(s)	654, 676
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	443
CsiI	ACCWGGT	1 cut(s)	43
Csp6I	GTAC	5 cut(s)	216, 276, 348, 527, 923
CspAI	ACCGGT	1 cut(s)	443
CviAII	CATG	1 cut(s)	413
CviQI	GTAC	5 cut(s)	216, 276, 348, 527, 923
DdeI	CTNAG	1 cut(s)	982
DpnI	GATC	9 cut(s)	81, 255, 318, 339, 411, 609, 848, 993, 1098
DpnII	GATC	9 cut(s)	79, 253, 316, 337, 409, 607, 846, 991, 1096
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	470
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Ecl136II	GAGCTC	4 cut(s)	227, 290, 362, 509
Eco24I	GRGCYC	4 cut(s)	229, 292, 364, 511
Eco53kI	GAGCTC	4 cut(s)	227, 290, 362, 509
Eco88I	CYCGRG	1 cut(s)	935
EcoICRI	GAGCTC	4 cut(s)	227, 290, 362, 509
EcoRII	CCWGG	2 cut(s)	43, 304
EcoT38I	GRGCYC	4 cut(s)	229, 292, 364, 511
FaeI	CATG	1 cut(s)	416
FatI	CATG	1 cut(s)	412
FauNDI	CATATG	2 cut(s)	661, 730
FbaI	TGATCA	4 cut(s)	79, 253, 316, 409
FblI	GTMKAC	3 cut(s)	113, 194, 738
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	4 cut(s)	229, 292, 364, 511
FspBI	CTAG	2 cut(s)	707, 1034
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	1 cut(s)	444
Hin1II	CATG	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HindIII	AAGCTT	2 cut(s)	13, 210
HinfI	GANTC	4 cut(s)	4, 70, 151, 976
HpaII	CCGG	1 cut(s)	444
Hpy166II	GTNNAC	7 cut(s)	58, 114, 164, 195, 348, 449, 739
Hpy188III	TCNNGA	1 cut(s)	1067
Hpy8I	GTNNAC	7 cut(s)	58, 114, 164, 195, 348, 449, 739
HpyAV	CCTTC	4 cut(s)	18, 500, 621, 869
HpyCH4III	ACNGT	3 cut(s)	55, 235, 298
HpyCH4IV	ACGT	2 cut(s)	23, 744
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 455, 461
HpyF3I	CTNAG	1 cut(s)	982
HpySE526I	ACGT	2 cut(s)	23, 744
Hsp92II	CATG	1 cut(s)	416
KpnI	GGTACC	1 cut(s)	279
Ksp22I	TGATCA	4 cut(s)	79, 253, 316, 409
Kzo9I	GATC	9 cut(s)	79, 253, 316, 337, 409, 607, 846, 991, 1096
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	9 cut(s)	224, 232, 287, 295, 308, 359, 367, 506, 514
Lsp1109I	GCAGC	8 cut(s)	257, 467, 597, 702, 735, 762, 900, 1060
MabI	ACCWGGT	1 cut(s)	43
MaeI	CTAG	2 cut(s)	707, 1034
MaeII	ACGT	2 cut(s)	23, 744
MalI	GATC	9 cut(s)	81, 255, 318, 339, 411, 609, 848, 993, 1098
MboI	GATC	9 cut(s)	79, 253, 316, 337, 409, 607, 846, 991, 1096
MboII	GAAGA	4 cut(s)	167, 581, 722, 1001
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	4 cut(s)	607, 846, 991, 1096
MhlI	GDGCHC	5 cut(s)	229, 292, 364, 451, 511
MlsI	TGGCCA	1 cut(s)	472
MluCI	AATT	4 cut(s)	92, 143, 592, 1105
MluNI	TGGCCA	1 cut(s)	472
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	536, 874
MnlI	CCTC	1 cut(s)	712
Mox20I	TGGCCA	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	472
MseI	TTAA	2 cut(s)	137, 576
Msp20I	TGGCCA	1 cut(s)	472
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	2 cut(s)	45, 306
MunI	CAATTG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	971
MvaI	CCWGG	2 cut(s)	45, 306
MwoI	GCNNNNNNNGC	3 cut(s)	26, 455, 461
NdeI	CATATG	2 cut(s)	661, 730
NdeII	GATC	9 cut(s)	79, 253, 316, 337, 409, 607, 846, 991, 1096
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	2 cut(s)	277, 609
PaqCI	CACCTGC	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	705
PctI	GAATGC	1 cut(s)	971
PfeI	GAWTC	3 cut(s)	70, 151, 976
PflMI	CCANNNNNTGG	1 cut(s)	604
PinAI	ACCGGT	1 cut(s)	443
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	4 cut(s)	229, 292, 364, 511
Psp1406I	AACGTT	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	43, 304
PspGI	CCWGG	2 cut(s)	43, 304
PspN4I	GGNNCC	2 cut(s)	277, 609
PstI	CTGCAG	1 cut(s)	687
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	4 cut(s)	607, 846, 991, 1096
RsaI	GTAC	5 cut(s)	217, 277, 349, 528, 924
RsaNI	GTAC	5 cut(s)	216, 276, 348, 527, 923
SacI	GAGCTC	4 cut(s)	229, 292, 364, 511
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	2 cut(s)	137, 576
Sau3AI	GATC	9 cut(s)	79, 253, 316, 337, 409, 607, 846, 991, 1096
ScaI	AGTACT	1 cut(s)	924
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	45, 306
SduI	GDGCHC	5 cut(s)	229, 292, 364, 451, 511
SexAI	ACCWGGT	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	683
Sse9I	AATT	4 cut(s)	92, 143, 592, 1105
SsiI	CCGC	5 cut(s)	536, 806, 836, 842, 1046
SspMI	CTAG	2 cut(s)	707, 1034
SstI	GAGCTC	4 cut(s)	229, 292, 364, 511
StyD4I	CCNGG	2 cut(s)	43, 304
TaaI	ACNGT	3 cut(s)	55, 235, 298
TaiI	ACGT	2 cut(s)	26, 747
TaqI	TCGA	1 cut(s)	639
TasI	AATT	4 cut(s)	92, 143, 592, 1105
TatI	WGTACW	2 cut(s)	215, 922
TauI	GCSGC	2 cut(s)	539, 808
TfiI	GAWTC	3 cut(s)	70, 151, 976
Tru1I	TTAA	2 cut(s)	137, 576
Tru9I	TTAA	2 cut(s)	137, 576
TscAI	CASTG	4 cut(s)	326, 466, 687, 1107
TseI	GCWGC	8 cut(s)	245, 455, 585, 715, 748, 775, 913, 1048
TspDTI	ATGAA	7 cut(s)	86, 167, 747, 806, 882, 912, 1026
TspRI	CASTG	4 cut(s)	326, 466, 687, 1107
Van91I	CCANNNNNTGG	1 cut(s)	604
VneI	GTGCAC	1 cut(s)	447
XapI	RAATTY	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XmiI	GTMKAC	3 cut(s)	113, 194, 738
XspI	CTAG	2 cut(s)	707, 1034
ZrmI	AGTACT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.