MD01G1120400.v1.1

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0006013
Physical Location & Seq
Reverse (-)
23388780 .. 23390430
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1120400.v1.1.491

Sequence Viewer

Length: 285 bp
ATGGGAGATTCTTCATCAGCATCATATATACACATGGTGCAGCACCTGATAGAGAAGTGTTTGACCTACCACTTGACCAAAGAGGAGTGCATGGAAGCTCTTTCTAAACATGCAAACATCAAACCTGTTATCACCTCTACTGTATGGAATGAACTGGAGAAAGTGAACAAGGAATTCTTCGAGGCGTATGAAGAGTCTCAGAATAAAGGAGATCGAATGTCAGAGGAAGAGACAAGCCAATTGATACAAAAGATGATCTCGGATTCCAAAGATTCCGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

95

Amino Acids

10.85

Weight (kDa)

4.8

Isoelectric Point (pI)

75.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 13 - 64 4.5e-26 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 173
AdeI CACNNNGTG 1 cut(s) 37
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 2 cut(s) 201, 224
AlwNI CAGNNNCTG 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 124
BbvI GCAGC 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 201, 224
BfaI CTAG 1 cut(s) 283
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmsI GCATC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 59
BsmAI GTCTC 2 cut(s) 201, 224
Bsp143I GATC 2 cut(s) 211, 255
BspCNI CTCAG 1 cut(s) 211
BsrI ACTGG 1 cut(s) 159
BssMI GATC 2 cut(s) 211, 255
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 186, 222
BstDEI CTNAG 1 cut(s) 198
BstKTI GATC 2 cut(s) 214, 258
BstMAI GTCTC 2 cut(s) 201, 224
BstMBI GATC 2 cut(s) 211, 255
BstNSI RCATGY 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 46
CviAII CATG 3 cut(s) 34, 91, 110
CviJI RGCY 2 cut(s) 98, 237
CviKI_1 RGCY 2 cut(s) 98, 237
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 213, 257
DpnII GATC 2 cut(s) 211, 255
DraIII CACNNNGTG 1 cut(s) 37
Eam1104I CTCTTC 2 cut(s) 186, 222
EarI CTCTTC 2 cut(s) 186, 222
EcoRI GAATTC 1 cut(s) 173
FaeI CATG 3 cut(s) 37, 94, 113
FaiI YATR 8 cut(s) 25, 27, 29, 35, 92, 111, 145, 189
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 3 cut(s) 33, 90, 109
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 283
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 176
Hin1II CATG 3 cut(s) 37, 94, 113
HinfI GANTC 4 cut(s) 8, 194, 263, 272
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 4 cut(s) 201, 223, 262, 277
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 40, 90, 113
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 3 cut(s) 37, 94, 113
Kzo9I GATC 2 cut(s) 211, 255
LpnPI CCDG 3 cut(s) 59, 138, 140
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 29
MaeI CTAG 1 cut(s) 283
MalI GATC 2 cut(s) 213, 257
MboI GATC 2 cut(s) 211, 255
MboII GAAGA 4 cut(s) 3, 169, 203, 239
MfeI CAATTG 1 cut(s) 239
MluCI AATT 2 cut(s) 173, 239
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 4 cut(s) 76, 145, 175, 217
MunI CAATTG 1 cut(s) 239
NdeII GATC 2 cut(s) 211, 255
NlaIII CATG 3 cut(s) 37, 94, 113
NspI RCATGY 1 cut(s) 113
PfeI GAWTC 3 cut(s) 8, 263, 272
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 46
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 211, 255
SchI GAGTC 1 cut(s) 203
SetI ASST 5 cut(s) 48, 68, 100, 127, 137
SfaNI GCATC 1 cut(s) 29
Sse9I AATT 2 cut(s) 173, 239
SspMI CTAG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 180, 214
TasI AATT 2 cut(s) 173, 239
TfiI GAWTC 3 cut(s) 8, 263, 272
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 165, 204
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 113
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.