AT2G11623

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006013
Physical Location & Seq
Reverse (-)
4660870 .. 4661415
546 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G11623.2

Sequence Viewer

Length: 333 bp
ATGGGAAAAGGCTCAATAACTGAAACCCTAGTTGAGGCTCGTTTGGGTAGAGGATGGAGAAGGTACGGTTGGTCTGAGGCGGCGAATAGAGGATCTGAATTGCGCTGGTCGCTGCCGGTGGGAGCGAGATCGCCGGTTAAGAACTTAATTGAGACATGCATTTACAAGTACATGAGTTTGGAAGAAACGGAGACATATGTGGAGGACAATCACAAGATTAGTCACCATCTCACCAAACCAATATGGGAGCAGCTTCAGAAAGAGAGTCCAGAGTTTTTCAAGAAGTACTACTTCCTCTGTGAATTAGCGCGTCAGATCGTCTCTTTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

110

Amino Acids

12.93

Weight (kDa)

8.56

Isoelectric Point (pI)

68.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 1 - 40 7.8e-13 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 310
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 3 cut(s) 65, 170, 287
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw26I GTCTC 3 cut(s) 146, 185, 325
AlwI GGATC 1 cut(s) 100
ApeKI GCWGC 2 cut(s) 112, 250
AspLEI GCGC 2 cut(s) 105, 310
AsuHPI GGTGA 2 cut(s) 215, 223
BbvI GCAGC 2 cut(s) 99, 262
BccI CCATC 2 cut(s) 48, 234
BcoDI GTCTC 3 cut(s) 146, 185, 325
BfaI CTAG 1 cut(s) 29
BisI GCNGC 3 cut(s) 81, 113, 251
BlsI GCNGC 3 cut(s) 82, 114, 252
BmcAI AGTACT 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 2 cut(s) 115, 133
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 99, 262
Bsh1236I CGCG 1 cut(s) 310
BsiSI CCGG 2 cut(s) 116, 134
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 3 cut(s) 146, 185, 325
BsmBI CGTCTC 1 cut(s) 325
Bsp143I GATC 3 cut(s) 92, 128, 315
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 310
BspPI GGATC 1 cut(s) 100
BsrFI RCCGGY 2 cut(s) 115, 133
BssAI RCCGGY 2 cut(s) 115, 133
BssMI GATC 3 cut(s) 92, 128, 315
Bst4CI ACNGT 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 75
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 310
BstHHI GCGC 2 cut(s) 105, 310
BstKTI GATC 3 cut(s) 95, 131, 318
BstMAI GTCTC 3 cut(s) 146, 185, 325
BstMBI GATC 3 cut(s) 92, 128, 315
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 159
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 99, 262
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BtsCI GGATG 1 cut(s) 59
CfoI GCGC 2 cut(s) 105, 310
Cfr10I RCCGGY 2 cut(s) 115, 133
CseI GACGC 1 cut(s) 299
Csp6I GTAC 3 cut(s) 64, 169, 286
CviAII CATG 2 cut(s) 156, 172
CviJI RGCY 3 cut(s) 12, 38, 253
CviKI_1 RGCY 3 cut(s) 12, 38, 253
CviQI GTAC 3 cut(s) 64, 169, 286
DdeI CTNAG 1 cut(s) 75
DpnI GATC 3 cut(s) 94, 130, 317
DpnII GATC 3 cut(s) 92, 128, 315
Eco57I CTGAAG 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 2 cut(s) 159, 175
FaiI YATR 5 cut(s) 157, 173, 196, 198, 244
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 2 cut(s) 155, 171
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 81, 113, 251
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 3 cut(s) 81, 113, 251
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 104, 309
GluI GCNGC 3 cut(s) 81, 113, 251
HapII CCGG 2 cut(s) 116, 134
HgaI GACGC 1 cut(s) 299
HhaI GCGC 2 cut(s) 105, 310
Hin1II CATG 2 cut(s) 159, 175
Hin6I GCGC 2 cut(s) 103, 308
HinP1I GCGC 2 cut(s) 103, 308
HinfI GANTC 1 cut(s) 265
HpaII CCGG 2 cut(s) 116, 134
HphI GGTGA 2 cut(s) 215, 223
Hpy188I TCNGA 4 cut(s) 76, 97, 258, 315
Hpy188III TCNNGA 3 cut(s) 269, 280, 330
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 2 cut(s) 159, 175
HspAI GCGC 2 cut(s) 103, 308
Kzo9I GATC 3 cut(s) 92, 128, 315
LmnI GCTCC 2 cut(s) 122, 247
LpnPI CCDG 4 cut(s) 91, 129, 147, 282
Lsp1109I GCAGC 2 cut(s) 99, 262
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 221
MalI GATC 3 cut(s) 94, 130, 317
MboI GATC 3 cut(s) 92, 128, 315
MboII GAAGA 1 cut(s) 194
MflI RGATCY 1 cut(s) 92
MluCI AATT 3 cut(s) 98, 147, 302
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 6 cut(s) 28, 44, 70, 83, 196, 305
Mph1103I ATGCAT 1 cut(s) 161
MseI TTAA 2 cut(s) 138, 146
MspI CCGG 2 cut(s) 116, 134
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeI CATATG 1 cut(s) 196
NdeII GATC 3 cut(s) 92, 128, 315
NlaIII CATG 2 cut(s) 159, 175
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 161
NspI RCATGY 1 cut(s) 159
PkrI GCNGC 3 cut(s) 82, 114, 252
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 3 cut(s) 65, 170, 287
RsaNI GTAC 3 cut(s) 64, 169, 286
SaqAI TTAA 2 cut(s) 138, 146
SatI GCNGC 3 cut(s) 81, 113, 251
Sau3AI GATC 3 cut(s) 92, 128, 315
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 1 cut(s) 274
SetI ASST 2 cut(s) 65, 255
Sse9I AATT 3 cut(s) 98, 147, 302
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 68
TasI AATT 3 cut(s) 98, 147, 302
TatI WGTACW 2 cut(s) 168, 285
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 138, 146
Tru9I TTAA 2 cut(s) 138, 146
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 2 cut(s) 112, 250
Tsp45I GTSAC 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 32
XceI RCATGY 1 cut(s) 159
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.