RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G49780 |
| fragaria_vesca | FvH4_2g05820 |
| malus_domestica | MD05G1083200.v1.1 |
| prunus_persica | Prupe.8G127600_v2.0.a1 |
| pyrus_communis | pycom05g08000 |
| rosa_chinensis | RchiOBHm_Chr6g0257831 RchiOBHm_Chr7g0191621 |
| rosa_laevigata | RLG00000005798 RLG00000014730 RLG00000015093 |
| rosa_multiflora | Rmu_co8263605.1_g000001 Rmu_sc0000077.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00110230 Rroxscaffold_7G00165410 |
| rosa_rugosa | Rorug05G0567500 |
| rosa_samantha | Rh6AG084400 Rh6BG079100 Rh6CG073800 Rh6DG070700 |
| rosa_wichuraiana | Rw6G007610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 499 |
| AatII | GACGTC | 1 cut(s) | 497 |
| AccB1I | GGYRCC | 2 cut(s) | 988, 1255 |
| AccBSI | CCGCTC | 1 cut(s) | 255 |
| AccII | CGCG | 7 cut(s) | 372, 426, 449, 656, 772, 884, 1043 |
| AccIII | TCCGGA | 1 cut(s) | 713 |
| AclWI | GGATC | 9 cut(s) | 33, 80, 149, 293, 306, 578, 591, 702, 724 |
| AcoI | YGGCCR | 1 cut(s) | 106 |
| AcsI | RAATTY | 1 cut(s) | 10 |
| AcvI | CACGTG | 1 cut(s) | 176 |
| AcyI | GRCGYC | 3 cut(s) | 264, 494, 1256 |
| AfaI | GTAC | 3 cut(s) | 1040, 1069, 1150 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 883 |
| AflIII | ACRYGT | 2 cut(s) | 173, 175 |
| AgsI | TTSAA | 5 cut(s) | 488, 635, 784, 1186, 1240 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 79 |
| AjiI | CACGTC | 1 cut(s) | 355 |
| AluBI | AGCT | 9 cut(s) | 404, 511, 572, 779, 857, 934, 1097, 1172, 1189 |
| AluI | AGCT | 9 cut(s) | 404, 511, 572, 779, 857, 934, 1097, 1172, 1189 |
| Alw21I | GWGCWC | 1 cut(s) | 859 |
| Alw26I | GTCTC | 6 cut(s) | 361, 551, 821, 826, 884, 1191 |
| AlwI | GGATC | 9 cut(s) | 33, 80, 149, 293, 306, 578, 591, 702, 724 |
| Aor13HI | TCCGGA | 1 cut(s) | 713 |
| AoxI | GGCC | 2 cut(s) | 106, 1205 |
| ApeKI | GCWGC | 2 cut(s) | 962, 1097 |
| ApoI | RAATTY | 1 cut(s) | 10 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 273, 738 |
| AspLEI | GCGC | 2 cut(s) | 374, 1258 |
| AsuC2I | CCSGG | 2 cut(s) | 6, 861 |
| AsuHPI | GGTGA | 4 cut(s) | 475, 983, 1012, 1126 |
| AsuII | TTCGAA | 1 cut(s) | 732 |
| BamHI | GGATCC | 2 cut(s) | 298, 583 |
| BanI | GGYRCC | 2 cut(s) | 988, 1255 |
| BanII | GRGCYC | 1 cut(s) | 859 |
| BauI | CACGAG | 1 cut(s) | 818 |
| BbrPI | CACGTG | 1 cut(s) | 176 |
| BbsI | GAAGAC | 2 cut(s) | 495, 1010 |
| Bbv12I | GWGCWC | 1 cut(s) | 859 |
| BbvI | GCAGC | 2 cut(s) | 949, 1084 |
| BccI | CCATC | 2 cut(s) | 104, 661 |
| BceAI | ACGGC | 5 cut(s) | 4, 207, 277, 1086, 1243 |
| BclI | TGATCA | 1 cut(s) | 705 |
| BcnI | CCSGG | 2 cut(s) | 6, 861 |
| BcoDI | GTCTC | 6 cut(s) | 361, 551, 821, 826, 884, 1191 |
| BfaI | CTAG | 3 cut(s) | 405, 588, 839 |
| BfoI | RGCGCY | 1 cut(s) | 1259 |
| Bme1390I | CCNGG | 2 cut(s) | 6, 861 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 79 |
| BmgBI | CACGTC | 1 cut(s) | 355 |
| BmiI | GGNNCC | 4 cut(s) | 300, 585, 990, 1257 |
| BmrFI | CCNGG | 2 cut(s) | 6, 861 |
| BmsI | GCATC | 4 cut(s) | 47, 138, 341, 1167 |
| BpiI | GAAGAC | 2 cut(s) | 495, 1010 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1156, 1188 |
| Bpu14I | TTCGAA | 1 cut(s) | 732 |
| BpuEI | CTTGAG | 1 cut(s) | 737 |
| BpuMI | CCSGG | 2 cut(s) | 6, 861 |
| BsaAI | YACGTR | 1 cut(s) | 176 |
| BsaBI | GATNNNNATC | 3 cut(s) | 791, 869, 1239 |
| BsaHI | GRCGYC | 3 cut(s) | 264, 494, 1256 |
| BsaJI | CCNNGG | 3 cut(s) | 5, 690, 860 |
| BsaWI | WCCGGW | 3 cut(s) | 344, 677, 713 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 548, 578, 1067, 1097 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 883 |
| Bse118I | RCCGGY | 2 cut(s) | 104, 292 |
| Bse1I | ACTGG | 1 cut(s) | 167 |
| Bse8I | GATNNNNATC | 3 cut(s) | 791, 869, 1239 |
| BseAI | TCCGGA | 1 cut(s) | 713 |
| BseDI | CCNNGG | 3 cut(s) | 5, 690, 860 |
| BseGI | GGATG | 3 cut(s) | 201, 332, 962 |
| BseJI | GATNNNNATC | 3 cut(s) | 791, 869, 1239 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 883 |
| BseMII | CTCAG | 4 cut(s) | 337, 510, 1187, 1207 |
| BseNI | ACTGG | 1 cut(s) | 167 |
| BseXI | GCAGC | 2 cut(s) | 949, 1084 |
| BsgI | GTGCAG | 1 cut(s) | 1157 |
| Bsh1236I | CGCG | 7 cut(s) | 372, 426, 449, 656, 772, 884, 1043 |
| Bsh1285I | CGRYCG | 2 cut(s) | 121, 877 |
| BshFI | GGCC | 2 cut(s) | 108, 1207 |
| BshNI | GGYRCC | 2 cut(s) | 988, 1255 |
| BsiEI | CGRYCG | 2 cut(s) | 121, 877 |
| BsiHKAI | GWGCWC | 1 cut(s) | 859 |
| BsiSI | CCGG | 8 cut(s) | 5, 105, 293, 345, 678, 714, 852, 860 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 883 |
| BsmAI | GTCTC | 6 cut(s) | 361, 551, 821, 826, 884, 1191 |
| BsmBI | CGTCTC | 3 cut(s) | 361, 551, 884 |
| BsnI | GGCC | 2 cut(s) | 108, 1207 |
| Bsp119I | TTCGAA | 1 cut(s) | 732 |
| Bsp1286I | GDGCHC | 1 cut(s) | 859 |
| Bsp13I | TCCGGA | 1 cut(s) | 713 |
| Bsp19I | CCATGG | 1 cut(s) | 690 |
| BspANI | GGCC | 2 cut(s) | 108, 1207 |
| BspCNI | CTCAG | 4 cut(s) | 336, 511, 1186, 1206 |
| BspEI | TCCGGA | 1 cut(s) | 713 |
| BspFNI | CGCG | 7 cut(s) | 372, 426, 449, 656, 772, 884, 1043 |
| BspLI | GGNNCC | 4 cut(s) | 300, 585, 990, 1257 |
| BspPI | GGATC | 9 cut(s) | 33, 80, 149, 293, 306, 578, 591, 702, 724 |
| BspT104I | TTCGAA | 1 cut(s) | 732 |
| BspT107I | GGYRCC | 2 cut(s) | 988, 1255 |
| BsrBI | CCGCTC | 1 cut(s) | 255 |
| BsrFI | RCCGGY | 2 cut(s) | 104, 292 |
| BsrI | ACTGG | 1 cut(s) | 167 |
| BssAI | RCCGGY | 2 cut(s) | 104, 292 |
| BssECI | CCNNGG | 3 cut(s) | 5, 690, 860 |
| BssNI | GRCGYC | 3 cut(s) | 264, 494, 1256 |
| BssSI | CACGAG | 1 cut(s) | 818 |
| BssT1I | CCWWGG | 1 cut(s) | 690 |
| Bst2BI | CACGAG | 1 cut(s) | 818 |
| Bst4CI | ACNGT | 5 cut(s) | 878, 928, 988, 1083, 1222 |
| Bst6I | CTCTTC | 1 cut(s) | 1157 |
| BstACI | GRCGYC | 3 cut(s) | 264, 494, 1256 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1126 |
| BstBAI | YACGTR | 1 cut(s) | 176 |
| BstBI | TTCGAA | 1 cut(s) | 732 |
| BstC8I | GCNNGC | 3 cut(s) | 528, 777, 978 |
| BstDEI | CTNAG | 4 cut(s) | 323, 519, 1173, 1193 |
| BstDSI | CCRYGG | 1 cut(s) | 690 |
| BstF5I | GGATG | 3 cut(s) | 201, 332, 962 |
| BstFNI | CGCG | 7 cut(s) | 372, 426, 449, 656, 772, 884, 1043 |
| BstH2I | RGCGCY | 1 cut(s) | 1259 |
| BstHHI | GCGC | 2 cut(s) | 374, 1258 |
| BstMAI | GTCTC | 6 cut(s) | 361, 551, 821, 826, 884, 1191 |
| BstMCI | CGRYCG | 2 cut(s) | 121, 877 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 261, 806, 848, 1049, 1058, 1103, 1126, 1135, 1186 |
| BstNSI | RCATGY | 1 cut(s) | 980 |
| BstSCI | CCNGG | 2 cut(s) | 4, 859 |
| BstUI | CGCG | 7 cut(s) | 372, 426, 449, 656, 772, 884, 1043 |
| BstV1I | GCAGC | 2 cut(s) | 949, 1084 |
| BstV2I | GAAGAC | 2 cut(s) | 495, 1010 |
| BstX2I | RGATCY | 5 cut(s) | 25, 298, 583, 694, 716 |
| BstYI | RGATCY | 5 cut(s) | 25, 298, 583, 694, 716 |
| BsuRI | GGCC | 2 cut(s) | 108, 1207 |
| BtgI | CCRYGG | 1 cut(s) | 690 |
| BtgZI | GCGATG | 1 cut(s) | 753 |
| BtrI | CACGTC | 1 cut(s) | 355 |
| BtsCI | GGATG | 3 cut(s) | 201, 332, 962 |
| BtsIMutI | CAGTG | 1 cut(s) | 933 |
| Cac8I | GCNNGC | 3 cut(s) | 528, 777, 978 |
| CfoI | GCGC | 2 cut(s) | 374, 1258 |
| Cfr10I | RCCGGY | 2 cut(s) | 104, 292 |
| CseI | GACGC | 4 cut(s) | 232, 253, 567, 1126 |
| Csp6I | GTAC | 3 cut(s) | 1039, 1068, 1149 |
| CviAII | CATG | 3 cut(s) | 138, 691, 977 |
| CviQI | GTAC | 3 cut(s) | 1039, 1068, 1149 |
| DdeI | CTNAG | 4 cut(s) | 323, 519, 1173, 1193 |
| DinI | GGCGCC | 1 cut(s) | 1257 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 499 |
| DriI | GACNNNNNGTC | 1 cut(s) | 79 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 499 |
| EaeI | YGGCCR | 1 cut(s) | 106 |
| Eam1104I | CTCTTC | 1 cut(s) | 1157 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 79 |
| EarI | CTCTTC | 1 cut(s) | 1157 |
| EciI | GGCGGA | 5 cut(s) | 209, 311, 838, 902, 1088 |
| Ecl136II | GAGCTC | 1 cut(s) | 857 |
| Eco130I | CCWWGG | 1 cut(s) | 690 |
| Eco24I | GRGCYC | 1 cut(s) | 859 |
| Eco53kI | GAGCTC | 1 cut(s) | 857 |
| Eco72I | CACGTG | 1 cut(s) | 176 |
| EcoICRI | GAGCTC | 1 cut(s) | 857 |
| EcoT14I | CCWWGG | 1 cut(s) | 690 |
| EcoT38I | GRGCYC | 1 cut(s) | 859 |
| EgeI | GGCGCC | 1 cut(s) | 1257 |
| EheI | GGCGCC | 1 cut(s) | 1257 |
| ErhI | CCWWGG | 1 cut(s) | 690 |
| Esp3I | CGTCTC | 3 cut(s) | 361, 551, 884 |
| FaeI | CATG | 3 cut(s) | 141, 694, 980 |
| FatI | CATG | 3 cut(s) | 137, 690, 976 |
| FauI | CCCGC | 2 cut(s) | 1039, 1099 |
| FauNDI | CATATG | 1 cut(s) | 549 |
| FbaI | TGATCA | 1 cut(s) | 705 |
| FokI | GGATG | 3 cut(s) | 188, 319, 969 |
| FriOI | GRGCYC | 1 cut(s) | 859 |
| FspBI | CTAG | 3 cut(s) | 405, 588, 839 |
| GlaI | GCGC | 2 cut(s) | 373, 1257 |
| HaeII | RGCGCY | 1 cut(s) | 1259 |
| HaeIII | GGCC | 2 cut(s) | 108, 1207 |
| HapII | CCGG | 8 cut(s) | 5, 105, 293, 345, 678, 714, 852, 860 |
| HgaI | GACGC | 4 cut(s) | 232, 253, 567, 1126 |
| HhaI | GCGC | 2 cut(s) | 374, 1258 |
| Hin1I | GRCGYC | 3 cut(s) | 264, 494, 1256 |
| Hin1II | CATG | 3 cut(s) | 141, 694, 980 |
| Hin6I | GCGC | 2 cut(s) | 372, 1256 |
| HinP1I | GCGC | 2 cut(s) | 372, 1256 |
| HincII | GTYRAC | 2 cut(s) | 646, 675 |
| HindII | GTYRAC | 2 cut(s) | 646, 675 |
| HindIII | AAGCTT | 1 cut(s) | 1187 |
| HpaI | GTTAAC | 1 cut(s) | 646 |
| HpaII | CCGG | 8 cut(s) | 5, 105, 293, 345, 678, 714, 852, 860 |
| HphI | GGTGA | 4 cut(s) | 475, 983, 1012, 1126 |
| Hpy166II | GTNNAC | 3 cut(s) | 368, 646, 675 |
| Hpy188III | TCNNGA | 4 cut(s) | 714, 743, 754, 820 |
| Hpy8I | GTNNAC | 3 cut(s) | 368, 646, 675 |
| Hpy99I | CGWCG | 8 cut(s) | 248, 269, 390, 496, 499, 583, 1036, 1235 |
| HpyAV | CCTTC | 2 cut(s) | 728, 947 |
| HpyCH4III | ACNGT | 5 cut(s) | 878, 928, 988, 1083, 1222 |
| HpyCH4IV | ACGT | 3 cut(s) | 175, 354, 494 |
| HpyCH4V | TGCA | 2 cut(s) | 547, 1138 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 261, 806, 848, 1049, 1058, 1103, 1126, 1135, 1186 |
| HpyF3I | CTNAG | 4 cut(s) | 323, 519, 1173, 1193 |
| HpySE526I | ACGT | 3 cut(s) | 175, 354, 494 |
| Hsp92I | GRCGYC | 3 cut(s) | 264, 494, 1256 |
| Hsp92II | CATG | 3 cut(s) | 141, 694, 980 |
| HspAI | GCGC | 2 cut(s) | 372, 1256 |
| KasI | GGCGCC | 1 cut(s) | 1255 |
| Kpn2I | TCCGGA | 1 cut(s) | 713 |
| Ksp22I | TGATCA | 1 cut(s) | 705 |
| KspAI | GTTAAC | 1 cut(s) | 646 |
| LmnI | GCTCC | 7 cut(s) | 508, 680, 854, 862, 910, 931, 1049 |
| Lsp1109I | GCAGC | 2 cut(s) | 949, 1084 |
| LweI | GCATC | 4 cut(s) | 47, 138, 341, 1167 |
| MaeI | CTAG | 3 cut(s) | 405, 588, 839 |
| MaeII | ACGT | 3 cut(s) | 175, 354, 494 |
| MaeIII | GTNAC | 4 cut(s) | 91, 169, 315, 1114 |
| MbiI | CCGCTC | 1 cut(s) | 255 |
| MboII | GAAGA | 7 cut(s) | 430, 495, 618, 740, 796, 1015, 1174 |
| MflI | RGATCY | 5 cut(s) | 25, 298, 583, 694, 716 |
| MhlI | GDGCHC | 1 cut(s) | 859 |
| MluCI | AATT | 4 cut(s) | 10, 339, 636, 701 |
| Mly113I | GGCGCC | 1 cut(s) | 1256 |
| MlyI | GAGTC | 3 cut(s) | 128, 530, 1193 |
| MmeI | TCCRAC | 3 cut(s) | 213, 561, 1254 |
| MnlI | CCTC | 5 cut(s) | 389, 444, 459, 908, 1069 |
| MroI | TCCGGA | 1 cut(s) | 713 |
| MroXI | GAANNNNTTC | 2 cut(s) | 273, 738 |
| MseI | TTAA | 3 cut(s) | 645, 869, 1013 |
| MspI | CCGG | 8 cut(s) | 5, 105, 293, 345, 678, 714, 852, 860 |
| MspR9I | CCNGG | 2 cut(s) | 6, 861 |
| MvnI | CGCG | 7 cut(s) | 372, 426, 449, 656, 772, 884, 1043 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 261, 806, 848, 1049, 1058, 1103, 1126, 1135, 1186 |
| NarI | GGCGCC | 1 cut(s) | 1256 |
| NciI | CCSGG | 2 cut(s) | 6, 861 |
| NcoI | CCATGG | 1 cut(s) | 690 |
| NdeI | CATATG | 1 cut(s) | 549 |
| NlaIII | CATG | 3 cut(s) | 141, 694, 980 |
| NlaIV | GGNNCC | 4 cut(s) | 300, 585, 990, 1257 |
| NmuCI | GTSAC | 3 cut(s) | 169, 315, 1114 |
| NspI | RCATGY | 1 cut(s) | 980 |
| NspV | TTCGAA | 1 cut(s) | 732 |
| PaeI | GCATGC | 1 cut(s) | 980 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 186, 1157, 1218 |
| PdmI | GAANNNNTTC | 2 cut(s) | 273, 738 |
| PfeI | GAWTC | 8 cut(s) | 33, 274, 421, 623, 722, 757, 792, 1214 |
| PleI | GAGTC | 3 cut(s) | 128, 529, 1193 |
| PluTI | GGCGCC | 1 cut(s) | 1259 |
| PmaCI | CACGTG | 1 cut(s) | 176 |
| PmlI | CACGTG | 1 cut(s) | 176 |
| PpsI | GAGTC | 3 cut(s) | 128, 529, 1193 |
| Ppu21I | YACGTR | 1 cut(s) | 176 |
| Psp124BI | GAGCTC | 1 cut(s) | 859 |
| PspCI | CACGTG | 1 cut(s) | 176 |
| PspN4I | GGNNCC | 4 cut(s) | 300, 585, 990, 1257 |
| PsuI | RGATCY | 5 cut(s) | 25, 298, 583, 694, 716 |
| RsaI | GTAC | 3 cut(s) | 1040, 1069, 1150 |
| RsaNI | GTAC | 3 cut(s) | 1039, 1068, 1149 |
| SacI | GAGCTC | 1 cut(s) | 859 |
| SaqAI | TTAA | 3 cut(s) | 645, 869, 1013 |
| SchI | GAGTC | 3 cut(s) | 128, 530, 1193 |
| ScrFI | CCNGG | 2 cut(s) | 6, 861 |
| SduI | GDGCHC | 1 cut(s) | 859 |
| SfaNI | GCATC | 4 cut(s) | 47, 138, 341, 1167 |
| SfoI | GGCGCC | 1 cut(s) | 1257 |
| SfuI | TTCGAA | 1 cut(s) | 732 |
| SmlI | CTYRAG | 1 cut(s) | 752 |
| SmoI | CTYRAG | 1 cut(s) | 752 |
| SphI | GCATGC | 1 cut(s) | 980 |
| Sse9I | AATT | 4 cut(s) | 10, 339, 636, 701 |
| SspDI | GGCGCC | 1 cut(s) | 1255 |
| SspMI | CTAG | 3 cut(s) | 405, 588, 839 |
| SstI | GAGCTC | 1 cut(s) | 859 |
| StyD4I | CCNGG | 2 cut(s) | 4, 859 |
| StyI | CCWWGG | 1 cut(s) | 690 |
| TaaI | ACNGT | 5 cut(s) | 878, 928, 988, 1083, 1222 |
| TaiI | ACGT | 3 cut(s) | 178, 357, 497 |
| TaqI | TCGA | 8 cut(s) | 132, 267, 629, 725, 732, 744, 873, 894 |
| TaqII | GACCGA | 1 cut(s) | 135 |
| TasI | AATT | 4 cut(s) | 10, 339, 636, 701 |
| TfiI | GAWTC | 8 cut(s) | 33, 274, 421, 623, 722, 757, 792, 1214 |
| Tru1I | TTAA | 3 cut(s) | 645, 869, 1013 |
| Tru9I | TTAA | 3 cut(s) | 645, 869, 1013 |
| TscAI | CASTG | 1 cut(s) | 933 |
| TseFI | GTSAC | 3 cut(s) | 169, 315, 1114 |
| TseI | GCWGC | 2 cut(s) | 962, 1097 |
| Tsp45I | GTSAC | 3 cut(s) | 169, 315, 1114 |
| TspDTI | ATGAA | 3 cut(s) | 756, 1107, 1214 |
| TspGWI | ACGGA | 7 cut(s) | 286, 298, 569, 575, 923, 1049, 1166 |
| TspRI | CASTG | 1 cut(s) | 933 |
| XapI | RAATTY | 1 cut(s) | 10 |
| XceI | RCATGY | 1 cut(s) | 980 |
| XmnI | GAANNNNTTC | 2 cut(s) | 273, 738 |
| XspI | CTAG | 3 cut(s) | 405, 588, 839 |
| ZraI | GACGTC | 1 cut(s) | 495 |