AT1G49780

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
18428788 .. 18430497
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49780.1

Sequence Viewer

Length: 1266 bp
ATGCCGGGGAATTTAGAGCCGTTGGATCTCGGAATCCAAATACCATACCATTTCAGATGCCCAATCTCACTTGACCTAATGTCTGATCCCGTAACCATCTCCACCGGCCAAACTTACGACCGAACCAGCATCGACTCATGGATCGCTATGGGCAACACCACTTGTCCAGTCACACGTGTCGCTCTCTCCGACTTCACTCTCATCCCTAACCACACTCTCCGCCGTCTTATCCAAGAATGGTGCGTCGCTAACCGCTCTAACGGCGTCGAACGGATTCCTACACCTAAACAACCGGCGGATCCAATCTCCGTTAGGTCACTTCTCAGTCAAGCATCCGCAATTACCGGAACTCACGTCTCTGTTCGTTCACGCGCCGCCGCTATTCGTCGTTTGAGAGGATTAGCTAGAGATAGTGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGGGAGATTTTGGTGAGGATTTTGTTCGCCGATATTGAAACGACGTCGTTGTCTTCGGAGCTTGTTTCTGAGTCGCTTGCTCTTTTGGTTTTATTGCATATGACGGAGACGGAGTGTGAAGCTGTTGCGTCGGATCCTAGTCGGGTCGGGTTTATGACCCGATTGTTGTTTGATTCTTCGATTGAAATTAGGGTTAACGCCGCCGCGTTGATTGAGATGGTGTTGACCGGAGCGAAATCCATGGATCTGAAATTGATCATTTCCGGATCTGATTCGATATTCGAAGGCGTTCTCGATCTTCTCAAGAATCCGATTTCATCGCGGCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAACGAGACATCTAGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGACCGTCTCGCGGCGGATTTCGATAGGTGTGATACGGAGCGAGGTTTAGCGACAGTGGAGCTTCTTTGCCGATTACCAGAAGGATGTGCTGCGTTTGGTGAGCATGCTTTGACGGTGCCGCTAATGGTGAAGACGATATTAAGAGTTTCAGATAGAGCGACGGAGTACGCGGCGGGAGCGTTGTTGGCTTTATGTACGGCGGAGGAACGGTGTAGAGATGAAGCTGCGGCGGCGGGATTGGTGACGCAGTTGTTGCTTCTGGTGCAGAGTGATTGTACGGAGAGAGCGAAGAGAAAAGCTCAGATGCTTTTGAAGCTTCTCAGAGACTCTTGGCCTGACGATTCTACCGTTCATTCCGACGATTTCAATCGTAGCGAAGTGGCGCCGTTTTGA

Protein Analysis

421

Amino Acids

45.96

Weight (kDa)

6.28

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 14 - 85 4.4e-19 U-box domain
ARM_PUB PF25598 103 - 416 6.9e-102 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 499
AatII GACGTC 1 cut(s) 497
AccB1I GGYRCC 2 cut(s) 988, 1255
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 7 cut(s) 372, 426, 449, 656, 772, 884, 1043
AccIII TCCGGA 1 cut(s) 713
AclWI GGATC 9 cut(s) 33, 80, 149, 293, 306, 578, 591, 702, 724
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 10
AcvI CACGTG 1 cut(s) 176
AcyI GRCGYC 3 cut(s) 264, 494, 1256
AfaI GTAC 3 cut(s) 1040, 1069, 1150
AfiI CCNNNNNNNGG 1 cut(s) 883
AflIII ACRYGT 2 cut(s) 173, 175
AgsI TTSAA 5 cut(s) 488, 635, 784, 1186, 1240
AhdI GACNNNNNGTC 1 cut(s) 79
AjiI CACGTC 1 cut(s) 355
AluBI AGCT 9 cut(s) 404, 511, 572, 779, 857, 934, 1097, 1172, 1189
AluI AGCT 9 cut(s) 404, 511, 572, 779, 857, 934, 1097, 1172, 1189
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 6 cut(s) 361, 551, 821, 826, 884, 1191
AlwI GGATC 9 cut(s) 33, 80, 149, 293, 306, 578, 591, 702, 724
Aor13HI TCCGGA 1 cut(s) 713
AoxI GGCC 2 cut(s) 106, 1205
ApeKI GCWGC 2 cut(s) 962, 1097
ApoI RAATTY 1 cut(s) 10
Asp700I GAANNNNTTC 2 cut(s) 273, 738
AspLEI GCGC 2 cut(s) 374, 1258
AsuC2I CCSGG 2 cut(s) 6, 861
AsuHPI GGTGA 4 cut(s) 475, 983, 1012, 1126
AsuII TTCGAA 1 cut(s) 732
BamHI GGATCC 2 cut(s) 298, 583
BanI GGYRCC 2 cut(s) 988, 1255
BanII GRGCYC 1 cut(s) 859
BauI CACGAG 1 cut(s) 818
BbrPI CACGTG 1 cut(s) 176
BbsI GAAGAC 2 cut(s) 495, 1010
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 2 cut(s) 949, 1084
BccI CCATC 2 cut(s) 104, 661
BceAI ACGGC 5 cut(s) 4, 207, 277, 1086, 1243
BclI TGATCA 1 cut(s) 705
BcnI CCSGG 2 cut(s) 6, 861
BcoDI GTCTC 6 cut(s) 361, 551, 821, 826, 884, 1191
BfaI CTAG 3 cut(s) 405, 588, 839
BfoI RGCGCY 1 cut(s) 1259
Bme1390I CCNGG 2 cut(s) 6, 861
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 355
BmiI GGNNCC 4 cut(s) 300, 585, 990, 1257
BmrFI CCNGG 2 cut(s) 6, 861
BmsI GCATC 4 cut(s) 47, 138, 341, 1167
BpiI GAAGAC 2 cut(s) 495, 1010
BplI GAGNNNNNCTC 2 cut(s) 1156, 1188
Bpu14I TTCGAA 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 737
BpuMI CCSGG 2 cut(s) 6, 861
BsaAI YACGTR 1 cut(s) 176
BsaBI GATNNNNATC 3 cut(s) 791, 869, 1239
BsaHI GRCGYC 3 cut(s) 264, 494, 1256
BsaJI CCNNGG 3 cut(s) 5, 690, 860
BsaWI WCCGGW 3 cut(s) 344, 677, 713
BsaXI ACNNNNNCTCC 4 cut(s) 548, 578, 1067, 1097
Bsc4I CCNNNNNNNGG 1 cut(s) 883
Bse118I RCCGGY 2 cut(s) 104, 292
Bse1I ACTGG 1 cut(s) 167
Bse8I GATNNNNATC 3 cut(s) 791, 869, 1239
BseAI TCCGGA 1 cut(s) 713
BseDI CCNNGG 3 cut(s) 5, 690, 860
BseGI GGATG 3 cut(s) 201, 332, 962
BseJI GATNNNNATC 3 cut(s) 791, 869, 1239
BseLI CCNNNNNNNGG 1 cut(s) 883
BseMII CTCAG 4 cut(s) 337, 510, 1187, 1207
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 949, 1084
BsgI GTGCAG 1 cut(s) 1157
Bsh1236I CGCG 7 cut(s) 372, 426, 449, 656, 772, 884, 1043
Bsh1285I CGRYCG 2 cut(s) 121, 877
BshFI GGCC 2 cut(s) 108, 1207
BshNI GGYRCC 2 cut(s) 988, 1255
BsiEI CGRYCG 2 cut(s) 121, 877
BsiHKAI GWGCWC 1 cut(s) 859
BsiSI CCGG 8 cut(s) 5, 105, 293, 345, 678, 714, 852, 860
BslI CCNNNNNNNGG 1 cut(s) 883
BsmAI GTCTC 6 cut(s) 361, 551, 821, 826, 884, 1191
BsmBI CGTCTC 3 cut(s) 361, 551, 884
BsnI GGCC 2 cut(s) 108, 1207
Bsp119I TTCGAA 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 859
Bsp13I TCCGGA 1 cut(s) 713
Bsp19I CCATGG 1 cut(s) 690
BspANI GGCC 2 cut(s) 108, 1207
BspCNI CTCAG 4 cut(s) 336, 511, 1186, 1206
BspEI TCCGGA 1 cut(s) 713
BspFNI CGCG 7 cut(s) 372, 426, 449, 656, 772, 884, 1043
BspLI GGNNCC 4 cut(s) 300, 585, 990, 1257
BspPI GGATC 9 cut(s) 33, 80, 149, 293, 306, 578, 591, 702, 724
BspT104I TTCGAA 1 cut(s) 732
BspT107I GGYRCC 2 cut(s) 988, 1255
BsrBI CCGCTC 1 cut(s) 255
BsrFI RCCGGY 2 cut(s) 104, 292
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 2 cut(s) 104, 292
BssECI CCNNGG 3 cut(s) 5, 690, 860
BssNI GRCGYC 3 cut(s) 264, 494, 1256
BssSI CACGAG 1 cut(s) 818
BssT1I CCWWGG 1 cut(s) 690
Bst2BI CACGAG 1 cut(s) 818
Bst4CI ACNGT 5 cut(s) 878, 928, 988, 1083, 1222
Bst6I CTCTTC 1 cut(s) 1157
BstACI GRCGYC 3 cut(s) 264, 494, 1256
BstAPI GCANNNNNTGC 1 cut(s) 1126
BstBAI YACGTR 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 732
BstC8I GCNNGC 3 cut(s) 528, 777, 978
BstDEI CTNAG 4 cut(s) 323, 519, 1173, 1193
BstDSI CCRYGG 1 cut(s) 690
BstF5I GGATG 3 cut(s) 201, 332, 962
BstFNI CGCG 7 cut(s) 372, 426, 449, 656, 772, 884, 1043
BstH2I RGCGCY 1 cut(s) 1259
BstHHI GCGC 2 cut(s) 374, 1258
BstMAI GTCTC 6 cut(s) 361, 551, 821, 826, 884, 1191
BstMCI CGRYCG 2 cut(s) 121, 877
BstMWI GCNNNNNNNGC 9 cut(s) 261, 806, 848, 1049, 1058, 1103, 1126, 1135, 1186
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 2 cut(s) 4, 859
BstUI CGCG 7 cut(s) 372, 426, 449, 656, 772, 884, 1043
BstV1I GCAGC 2 cut(s) 949, 1084
BstV2I GAAGAC 2 cut(s) 495, 1010
BstX2I RGATCY 5 cut(s) 25, 298, 583, 694, 716
BstYI RGATCY 5 cut(s) 25, 298, 583, 694, 716
BsuRI GGCC 2 cut(s) 108, 1207
BtgI CCRYGG 1 cut(s) 690
BtgZI GCGATG 1 cut(s) 753
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 3 cut(s) 201, 332, 962
BtsIMutI CAGTG 1 cut(s) 933
Cac8I GCNNGC 3 cut(s) 528, 777, 978
CfoI GCGC 2 cut(s) 374, 1258
Cfr10I RCCGGY 2 cut(s) 104, 292
CseI GACGC 4 cut(s) 232, 253, 567, 1126
Csp6I GTAC 3 cut(s) 1039, 1068, 1149
CviAII CATG 3 cut(s) 138, 691, 977
CviQI GTAC 3 cut(s) 1039, 1068, 1149
DdeI CTNAG 4 cut(s) 323, 519, 1173, 1193
DinI GGCGCC 1 cut(s) 1257
DrdI GACNNNNNNGTC 1 cut(s) 499
DriI GACNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 1157
Eam1105I GACNNNNNGTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 1157
EciI GGCGGA 5 cut(s) 209, 311, 838, 902, 1088
Ecl136II GAGCTC 1 cut(s) 857
Eco130I CCWWGG 1 cut(s) 690
Eco24I GRGCYC 1 cut(s) 859
Eco53kI GAGCTC 1 cut(s) 857
Eco72I CACGTG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 857
EcoT14I CCWWGG 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 859
EgeI GGCGCC 1 cut(s) 1257
EheI GGCGCC 1 cut(s) 1257
ErhI CCWWGG 1 cut(s) 690
Esp3I CGTCTC 3 cut(s) 361, 551, 884
FaeI CATG 3 cut(s) 141, 694, 980
FatI CATG 3 cut(s) 137, 690, 976
FauI CCCGC 2 cut(s) 1039, 1099
FauNDI CATATG 1 cut(s) 549
FbaI TGATCA 1 cut(s) 705
FokI GGATG 3 cut(s) 188, 319, 969
FriOI GRGCYC 1 cut(s) 859
FspBI CTAG 3 cut(s) 405, 588, 839
GlaI GCGC 2 cut(s) 373, 1257
HaeII RGCGCY 1 cut(s) 1259
HaeIII GGCC 2 cut(s) 108, 1207
HapII CCGG 8 cut(s) 5, 105, 293, 345, 678, 714, 852, 860
HgaI GACGC 4 cut(s) 232, 253, 567, 1126
HhaI GCGC 2 cut(s) 374, 1258
Hin1I GRCGYC 3 cut(s) 264, 494, 1256
Hin1II CATG 3 cut(s) 141, 694, 980
Hin6I GCGC 2 cut(s) 372, 1256
HinP1I GCGC 2 cut(s) 372, 1256
HincII GTYRAC 2 cut(s) 646, 675
HindII GTYRAC 2 cut(s) 646, 675
HindIII AAGCTT 1 cut(s) 1187
HpaI GTTAAC 1 cut(s) 646
HpaII CCGG 8 cut(s) 5, 105, 293, 345, 678, 714, 852, 860
HphI GGTGA 4 cut(s) 475, 983, 1012, 1126
Hpy166II GTNNAC 3 cut(s) 368, 646, 675
Hpy188III TCNNGA 4 cut(s) 714, 743, 754, 820
Hpy8I GTNNAC 3 cut(s) 368, 646, 675
Hpy99I CGWCG 8 cut(s) 248, 269, 390, 496, 499, 583, 1036, 1235
HpyAV CCTTC 2 cut(s) 728, 947
HpyCH4III ACNGT 5 cut(s) 878, 928, 988, 1083, 1222
HpyCH4IV ACGT 3 cut(s) 175, 354, 494
HpyCH4V TGCA 2 cut(s) 547, 1138
HpyF10VI GCNNNNNNNGC 9 cut(s) 261, 806, 848, 1049, 1058, 1103, 1126, 1135, 1186
HpyF3I CTNAG 4 cut(s) 323, 519, 1173, 1193
HpySE526I ACGT 3 cut(s) 175, 354, 494
Hsp92I GRCGYC 3 cut(s) 264, 494, 1256
Hsp92II CATG 3 cut(s) 141, 694, 980
HspAI GCGC 2 cut(s) 372, 1256
KasI GGCGCC 1 cut(s) 1255
Kpn2I TCCGGA 1 cut(s) 713
Ksp22I TGATCA 1 cut(s) 705
KspAI GTTAAC 1 cut(s) 646
LmnI GCTCC 7 cut(s) 508, 680, 854, 862, 910, 931, 1049
Lsp1109I GCAGC 2 cut(s) 949, 1084
LweI GCATC 4 cut(s) 47, 138, 341, 1167
MaeI CTAG 3 cut(s) 405, 588, 839
MaeII ACGT 3 cut(s) 175, 354, 494
MaeIII GTNAC 4 cut(s) 91, 169, 315, 1114
MbiI CCGCTC 1 cut(s) 255
MboII GAAGA 7 cut(s) 430, 495, 618, 740, 796, 1015, 1174
MflI RGATCY 5 cut(s) 25, 298, 583, 694, 716
MhlI GDGCHC 1 cut(s) 859
MluCI AATT 4 cut(s) 10, 339, 636, 701
Mly113I GGCGCC 1 cut(s) 1256
MlyI GAGTC 3 cut(s) 128, 530, 1193
MmeI TCCRAC 3 cut(s) 213, 561, 1254
MnlI CCTC 5 cut(s) 389, 444, 459, 908, 1069
MroI TCCGGA 1 cut(s) 713
MroXI GAANNNNTTC 2 cut(s) 273, 738
MseI TTAA 3 cut(s) 645, 869, 1013
MspI CCGG 8 cut(s) 5, 105, 293, 345, 678, 714, 852, 860
MspR9I CCNGG 2 cut(s) 6, 861
MvnI CGCG 7 cut(s) 372, 426, 449, 656, 772, 884, 1043
MwoI GCNNNNNNNGC 9 cut(s) 261, 806, 848, 1049, 1058, 1103, 1126, 1135, 1186
NarI GGCGCC 1 cut(s) 1256
NciI CCSGG 2 cut(s) 6, 861
NcoI CCATGG 1 cut(s) 690
NdeI CATATG 1 cut(s) 549
NlaIII CATG 3 cut(s) 141, 694, 980
NlaIV GGNNCC 4 cut(s) 300, 585, 990, 1257
NmuCI GTSAC 3 cut(s) 169, 315, 1114
NspI RCATGY 1 cut(s) 980
NspV TTCGAA 1 cut(s) 732
PaeI GCATGC 1 cut(s) 980
PcsI WCGNNNNNNNCGW 3 cut(s) 186, 1157, 1218
PdmI GAANNNNTTC 2 cut(s) 273, 738
PfeI GAWTC 8 cut(s) 33, 274, 421, 623, 722, 757, 792, 1214
PleI GAGTC 3 cut(s) 128, 529, 1193
PluTI GGCGCC 1 cut(s) 1259
PmaCI CACGTG 1 cut(s) 176
PmlI CACGTG 1 cut(s) 176
PpsI GAGTC 3 cut(s) 128, 529, 1193
Ppu21I YACGTR 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 859
PspCI CACGTG 1 cut(s) 176
PspN4I GGNNCC 4 cut(s) 300, 585, 990, 1257
PsuI RGATCY 5 cut(s) 25, 298, 583, 694, 716
RsaI GTAC 3 cut(s) 1040, 1069, 1150
RsaNI GTAC 3 cut(s) 1039, 1068, 1149
SacI GAGCTC 1 cut(s) 859
SaqAI TTAA 3 cut(s) 645, 869, 1013
SchI GAGTC 3 cut(s) 128, 530, 1193
ScrFI CCNGG 2 cut(s) 6, 861
SduI GDGCHC 1 cut(s) 859
SfaNI GCATC 4 cut(s) 47, 138, 341, 1167
SfoI GGCGCC 1 cut(s) 1257
SfuI TTCGAA 1 cut(s) 732
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
SphI GCATGC 1 cut(s) 980
Sse9I AATT 4 cut(s) 10, 339, 636, 701
SspDI GGCGCC 1 cut(s) 1255
SspMI CTAG 3 cut(s) 405, 588, 839
SstI GAGCTC 1 cut(s) 859
StyD4I CCNGG 2 cut(s) 4, 859
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 5 cut(s) 878, 928, 988, 1083, 1222
TaiI ACGT 3 cut(s) 178, 357, 497
TaqI TCGA 8 cut(s) 132, 267, 629, 725, 732, 744, 873, 894
TaqII GACCGA 1 cut(s) 135
TasI AATT 4 cut(s) 10, 339, 636, 701
TfiI GAWTC 8 cut(s) 33, 274, 421, 623, 722, 757, 792, 1214
Tru1I TTAA 3 cut(s) 645, 869, 1013
Tru9I TTAA 3 cut(s) 645, 869, 1013
TscAI CASTG 1 cut(s) 933
TseFI GTSAC 3 cut(s) 169, 315, 1114
TseI GCWGC 2 cut(s) 962, 1097
Tsp45I GTSAC 3 cut(s) 169, 315, 1114
TspDTI ATGAA 3 cut(s) 756, 1107, 1214
TspGWI ACGGA 7 cut(s) 286, 298, 569, 575, 923, 1049, 1166
TspRI CASTG 1 cut(s) 933
XapI RAATTY 1 cut(s) 10
XceI RCATGY 1 cut(s) 980
XmnI GAANNNNTTC 2 cut(s) 273, 738
XspI CTAG 3 cut(s) 405, 588, 839
ZraI GACGTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.