RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G49780 |
| fragaria_vesca | FvH4_2g05820 |
| malus_domestica | MD05G1083200.v1.1 |
| prunus_persica | Prupe.8G127600_v2.0.a1 |
| pyrus_communis | pycom05g08000 |
| rosa_chinensis | RchiOBHm_Chr6g0257831 RchiOBHm_Chr7g0191621 |
| rosa_laevigata | RLG00000005798 RLG00000014730 RLG00000015093 |
| rosa_multiflora | Rmu_co8263605.1_g000001 Rmu_sc0000077.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00110230 Rroxscaffold_7G00165410 |
| rosa_rugosa | Rorug05G0567500 |
| rosa_samantha | Rh6AG084400 Rh6BG079100 Rh6CG073800 Rh6DG070700 |
| rosa_wichuraiana | Rw6G007610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 170 |
| Acc16I | TGCGCA | 1 cut(s) | 553 |
| Acc36I | ACCTGC | 1 cut(s) | 170 |
| AccB1I | GGYRCC | 2 cut(s) | 57, 970 |
| AccBSI | CCGCTC | 4 cut(s) | 184, 255, 417, 535 |
| AccI | GTMKAC | 1 cut(s) | 705 |
| AcoI | YGGCCR | 4 cut(s) | 636, 660, 834, 867 |
| AcsI | RAATTY | 1 cut(s) | 1207 |
| AcuI | CTGAAG | 3 cut(s) | 37, 1016, 1187 |
| AcyI | GRCGYC | 6 cut(s) | 264, 335, 563, 723, 1055, 1077 |
| AfaI | GTAC | 5 cut(s) | 353, 587, 1022, 1132, 1242 |
| AfeI | AGCGCT | 1 cut(s) | 900 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 94, 174, 232, 577, 669, 823, 1015 |
| AjnI | CCWGG | 6 cut(s) | 4, 231, 359, 588, 657, 801 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 242, 274 |
| Alw21I | GWGCWC | 4 cut(s) | 78, 1036, 1052, 1236 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1162 |
| Ama87I | CYCGRG | 1 cut(s) | 1190 |
| Aor51HI | AGCGCT | 1 cut(s) | 900 |
| ApaI | GGGCCC | 1 cut(s) | 181 |
| ApeKI | GCWGC | 9 cut(s) | 554, 916, 953, 1025, 1102, 1111, 1159, 1162, 1227 |
| ApoI | RAATTY | 1 cut(s) | 1207 |
| AsuC2I | CCSGG | 6 cut(s) | 106, 572, 578, 664, 1010, 1139 |
| AsuHPI | GGTGA | 3 cut(s) | 316, 817, 994 |
| AvaI | CYCGRG | 1 cut(s) | 1190 |
| AvaII | GGWCC | 5 cut(s) | 568, 574, 622, 1006, 1135 |
| BaeGI | GKGCMC | 2 cut(s) | 62, 181 |
| BanI | GGYRCC | 2 cut(s) | 57, 970 |
| BanII | GRGCYC | 4 cut(s) | 78, 181, 1036, 1236 |
| BauI | CACGAG | 2 cut(s) | 461, 503 |
| BbsI | GAAGAC | 1 cut(s) | 992 |
| Bbv12I | GWGCWC | 4 cut(s) | 78, 1036, 1052, 1236 |
| BbvI | GCAGC | 9 cut(s) | 566, 903, 940, 1012, 1098, 1114, 1146, 1149, 1239 |
| BccI | CCATC | 3 cut(s) | 324, 431, 610 |
| BceAI | ACGGC | 5 cut(s) | 4, 690, 812, 960, 1064 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 730, 764, 898, 932, 1216, 1250 |
| BciT130I | CCWGG | 6 cut(s) | 6, 233, 361, 590, 659, 803 |
| BciVI | GTATCC | 1 cut(s) | 765 |
| BcnI | CCSGG | 6 cut(s) | 106, 572, 578, 664, 1010, 1139 |
| BfaI | CTAG | 1 cut(s) | 71 |
| BfmI | CTRYAG | 1 cut(s) | 922 |
| BfoI | RGCGCY | 4 cut(s) | 512, 788, 845, 902 |
| BfuAI | ACCTGC | 1 cut(s) | 170 |
| BfuI | GTATCC | 1 cut(s) | 765 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 387, 833, 1085 |
| BglII | AGATCT | 1 cut(s) | 999 |
| Bme18I | GGWCC | 5 cut(s) | 568, 574, 622, 1006, 1135 |
| BmeT110I | CYCGRG | 1 cut(s) | 1190 |
| BmiI | GGNNCC | 5 cut(s) | 59, 179, 180, 570, 972 |
| BmsI | GCATC | 1 cut(s) | 138 |
| BpiI | GAAGAC | 1 cut(s) | 992 |
| BpuMI | CCSGG | 6 cut(s) | 106, 572, 578, 664, 1010, 1139 |
| BsaAI | YACGTR | 1 cut(s) | 386 |
| BsaHI | GRCGYC | 6 cut(s) | 264, 335, 563, 723, 1055, 1077 |
| BsaJI | CCNNGG | 6 cut(s) | 5, 147, 718, 864, 1080, 1191 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 94, 174, 232, 577, 669, 823, 1015 |
| Bse118I | RCCGGY | 1 cut(s) | 476 |
| Bse3DI | GCAATG | 1 cut(s) | 706 |
| BseBI | CCWGG | 6 cut(s) | 6, 233, 361, 590, 659, 803 |
| BseDI | CCNNGG | 6 cut(s) | 5, 147, 718, 864, 1080, 1191 |
| BseGI | GGATG | 2 cut(s) | 201, 309 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 94, 174, 232, 577, 669, 823, 1015 |
| BseMI | GCAATG | 1 cut(s) | 706 |
| BseMII | CTCAG | 1 cut(s) | 681 |
| BsePI | GCGCGC | 1 cut(s) | 762 |
| BseRI | GAGGAG | 2 cut(s) | 311, 418 |
| BseSI | GKGCMC | 2 cut(s) | 62, 181 |
| BseX3I | CGGCCG | 2 cut(s) | 636, 834 |
| BseXI | GCAGC | 9 cut(s) | 566, 903, 940, 1012, 1098, 1114, 1146, 1149, 1239 |
| BseYI | CCCAGC | 3 cut(s) | 125, 594, 1155 |
| BsgI | GTGCAG | 2 cut(s) | 56, 1139 |
| Bsh1285I | CGRYCG | 4 cut(s) | 121, 639, 837, 912 |
| BshNI | GGYRCC | 2 cut(s) | 57, 970 |
| BsiEI | CGRYCG | 4 cut(s) | 121, 639, 837, 912 |
| BsiHKAI | GWGCWC | 4 cut(s) | 78, 1036, 1052, 1236 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1190 |
| BsiSI | CCGG | 9 cut(s) | 105, 477, 572, 577, 663, 837, 1009, 1029, 1138 |
| BslFI | GGGAC | 1 cut(s) | 914 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 94, 174, 232, 577, 669, 823, 1015 |
| BsmFI | GGGAC | 1 cut(s) | 914 |
| BsmI | GAATGC | 1 cut(s) | 273 |
| BsoBI | CYCGRG | 1 cut(s) | 1190 |
| Bsp120I | GGGCCC | 1 cut(s) | 177 |
| Bsp1286I | GDGCHC | 6 cut(s) | 62, 78, 181, 1036, 1052, 1236 |
| Bsp143I | GATC | 3 cut(s) | 645, 909, 999 |
| BspCNI | CTCAG | 1 cut(s) | 682 |
| BspLI | GGNNCC | 5 cut(s) | 59, 179, 180, 570, 972 |
| BspMAI | CTGCAG | 1 cut(s) | 926 |
| BspMI | ACCTGC | 1 cut(s) | 170 |
| BspQI | GCTCTTC | 2 cut(s) | 794, 1058 |
| BspT107I | GGYRCC | 2 cut(s) | 57, 970 |
| BsrBI | CCGCTC | 4 cut(s) | 184, 255, 417, 535 |
| BsrDI | GCAATG | 1 cut(s) | 706 |
| BsrFI | RCCGGY | 1 cut(s) | 476 |
| BssAI | RCCGGY | 1 cut(s) | 476 |
| BssECI | CCNNGG | 6 cut(s) | 5, 147, 718, 864, 1080, 1191 |
| BssHII | GCGCGC | 1 cut(s) | 762 |
| BssMI | GATC | 3 cut(s) | 645, 909, 999 |
| BssNI | GRCGYC | 6 cut(s) | 264, 335, 563, 723, 1055, 1077 |
| BssSI | CACGAG | 2 cut(s) | 461, 503 |
| BssT1I | CCWWGG | 2 cut(s) | 718, 864 |
| Bst2BI | CACGAG | 2 cut(s) | 461, 503 |
| Bst2UI | CCWGG | 6 cut(s) | 6, 233, 361, 590, 659, 803 |
| Bst4CI | ACNGT | 3 cut(s) | 97, 938, 970 |
| Bst6I | CTCTTC | 2 cut(s) | 794, 1058 |
| BstACI | GRCGYC | 6 cut(s) | 264, 335, 563, 723, 1055, 1077 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1108 |
| BstBAI | YACGTR | 1 cut(s) | 386 |
| BstC8I | GCNNGC | 9 cut(s) | 177, 294, 397, 513, 764, 897, 903, 1090, 1232 |
| BstDEI | CTNAG | 1 cut(s) | 690 |
| BstDSI | CCRYGG | 2 cut(s) | 147, 1080 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 230 |
| BstF5I | GGATG | 2 cut(s) | 201, 309 |
| BstH2I | RGCGCY | 4 cut(s) | 512, 788, 845, 902 |
| BstKTI | GATC | 3 cut(s) | 648, 912, 1002 |
| BstMBI | GATC | 3 cut(s) | 645, 909, 999 |
| BstMCI | CGRYCG | 4 cut(s) | 121, 639, 837, 912 |
| BstNI | CCWGG | 6 cut(s) | 6, 233, 361, 590, 659, 803 |
| BstSFI | CTRYAG | 1 cut(s) | 922 |
| BstSLI | GKGCMC | 2 cut(s) | 62, 181 |
| BstV1I | GCAGC | 9 cut(s) | 566, 903, 940, 1012, 1098, 1114, 1146, 1149, 1239 |
| BstV2I | GAAGAC | 1 cut(s) | 992 |
| BstX2I | RGATCY | 1 cut(s) | 999 |
| BstYI | RGATCY | 1 cut(s) | 999 |
| BstZI | CGGCCG | 2 cut(s) | 636, 834 |
| BsuI | GTATCC | 1 cut(s) | 765 |
| BtgI | CCRYGG | 2 cut(s) | 147, 1080 |
| BtsCI | GGATG | 2 cut(s) | 201, 309 |
| BveI | ACCTGC | 1 cut(s) | 170 |
| Cac8I | GCNNGC | 9 cut(s) | 177, 294, 397, 513, 764, 897, 903, 1090, 1232 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1162 |
| Cfr10I | RCCGGY | 1 cut(s) | 476 |
| CpoI | CGGWCCG | 3 cut(s) | 574, 1006, 1135 |
| CseI | GACGC | 8 cut(s) | 232, 253, 324, 552, 712, 1044, 1085, 1108 |
| Csp6I | GTAC | 5 cut(s) | 352, 586, 1021, 1131, 1241 |
| CspI | CGGWCCG | 3 cut(s) | 574, 1006, 1135 |
| CviAII | CATG | 1 cut(s) | 79 |
| CviQI | GTAC | 5 cut(s) | 352, 586, 1021, 1131, 1241 |
| DdeI | CTNAG | 1 cut(s) | 690 |
| DpnI | GATC | 3 cut(s) | 647, 911, 1001 |
| DpnII | GATC | 3 cut(s) | 645, 909, 999 |
| EaeI | YGGCCR | 4 cut(s) | 636, 660, 834, 867 |
| EagI | CGGCCG | 2 cut(s) | 636, 834 |
| Eam1104I | CTCTTC | 2 cut(s) | 794, 1058 |
| EarI | CTCTTC | 2 cut(s) | 794, 1058 |
| EciI | GGCGGA | 3 cut(s) | 302, 358, 692 |
| Ecl136II | GAGCTC | 3 cut(s) | 76, 1034, 1234 |
| EclXI | CGGCCG | 2 cut(s) | 636, 834 |
| Eco130I | CCWWGG | 2 cut(s) | 718, 864 |
| Eco24I | GRGCYC | 4 cut(s) | 78, 181, 1036, 1236 |
| Eco47I | GGWCC | 5 cut(s) | 568, 574, 622, 1006, 1135 |
| Eco47III | AGCGCT | 1 cut(s) | 900 |
| Eco52I | CGGCCG | 2 cut(s) | 636, 834 |
| Eco53kI | GAGCTC | 3 cut(s) | 76, 1034, 1234 |
| Eco57I | CTGAAG | 3 cut(s) | 37, 1016, 1187 |
| Eco88I | CYCGRG | 1 cut(s) | 1190 |
| EcoICRI | GAGCTC | 3 cut(s) | 76, 1034, 1234 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 230 |
| EcoO109I | RGGNCCY | 1 cut(s) | 178 |
| EcoRI | GAATTC | 1 cut(s) | 1207 |
| EcoRII | CCWGG | 6 cut(s) | 4, 231, 359, 588, 657, 801 |
| EcoT14I | CCWWGG | 2 cut(s) | 718, 864 |
| EcoT38I | GRGCYC | 4 cut(s) | 78, 181, 1036, 1236 |
| ErhI | CCWWGG | 2 cut(s) | 718, 864 |
| FaeI | CATG | 1 cut(s) | 82 |
| FaiI | YATR | 3 cut(s) | 46, 65, 80 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 773, 805 |
| FaqI | GGGAC | 1 cut(s) | 914 |
| FatI | CATG | 1 cut(s) | 78 |
| FauI | CCCGC | 7 cut(s) | 168, 189, 404, 449, 540, 767, 1081 |
| FblI | GTMKAC | 1 cut(s) | 705 |
| FokI | GGATG | 2 cut(s) | 188, 296 |
| FriOI | GRGCYC | 4 cut(s) | 78, 181, 1036, 1236 |
| FspBI | CTAG | 1 cut(s) | 71 |
| FspI | TGCGCA | 1 cut(s) | 553 |
| GsaI | CCCAGC | 3 cut(s) | 129, 598, 1159 |
| HaeII | RGCGCY | 4 cut(s) | 512, 788, 845, 902 |
| HapII | CCGG | 9 cut(s) | 105, 477, 572, 577, 663, 837, 1009, 1029, 1138 |
| HgaI | GACGC | 8 cut(s) | 232, 253, 324, 552, 712, 1044, 1085, 1108 |
| Hin1I | GRCGYC | 6 cut(s) | 264, 335, 563, 723, 1055, 1077 |
| Hin1II | CATG | 1 cut(s) | 82 |
| HincII | GTYRAC | 4 cut(s) | 498, 631, 706, 1098 |
| HindII | GTYRAC | 4 cut(s) | 498, 631, 706, 1098 |
| HindIII | AAGCTT | 1 cut(s) | 1169 |
| HpaII | CCGG | 9 cut(s) | 105, 477, 572, 577, 663, 837, 1009, 1029, 1138 |
| HphI | GGTGA | 3 cut(s) | 316, 817, 994 |
| Hpy166II | GTNNAC | 4 cut(s) | 498, 631, 706, 1098 |
| Hpy188III | TCNNGA | 4 cut(s) | 503, 649, 877, 1178 |
| Hpy8I | GTNNAC | 4 cut(s) | 498, 631, 706, 1098 |
| HpyAV | CCTTC | 2 cut(s) | 383, 1144 |
| HpyCH4III | ACNGT | 3 cut(s) | 97, 938, 970 |
| HpyCH4IV | ACGT | 2 cut(s) | 385, 654 |
| HpyCH4V | TGCA | 5 cut(s) | 37, 924, 942, 1120, 1227 |
| HpyF3I | CTNAG | 1 cut(s) | 690 |
| HpySE526I | ACGT | 2 cut(s) | 385, 654 |
| Hsp92I | GRCGYC | 6 cut(s) | 264, 335, 563, 723, 1055, 1077 |
| Hsp92II | CATG | 1 cut(s) | 82 |
| Kzo9I | GATC | 3 cut(s) | 645, 909, 999 |
| LguI | GCTCTTC | 2 cut(s) | 794, 1058 |
| LmnI | GCTCC | 6 cut(s) | 422, 540, 679, 839, 892, 1031 |
| Lsp1109I | GCAGC | 9 cut(s) | 566, 903, 940, 1012, 1098, 1114, 1146, 1149, 1239 |
| LweI | GCATC | 1 cut(s) | 138 |
| MaeI | CTAG | 1 cut(s) | 71 |
| MaeII | ACGT | 2 cut(s) | 385, 654 |
| MaeIII | GTNAC | 2 cut(s) | 91, 169 |
| MalI | GATC | 3 cut(s) | 647, 911, 1001 |
| MbiI | CCGCTC | 4 cut(s) | 184, 255, 417, 535 |
| MboI | GATC | 3 cut(s) | 645, 909, 999 |
| MboII | GAAGA | 6 cut(s) | 480, 781, 997, 1009, 1075, 1166 |
| MflI | RGATCY | 1 cut(s) | 999 |
| MhlI | GDGCHC | 6 cut(s) | 62, 78, 181, 1036, 1052, 1236 |
| MluCI | AATT | 2 cut(s) | 340, 1207 |
| MlyI | GAGTC | 6 cut(s) | 143, 493, 551, 636, 881, 936 |
| MmeI | TCCRAC | 5 cut(s) | 213, 369, 546, 570, 1038 |
| MnlI | CCTC | 8 cut(s) | 332, 401, 413, 439, 461, 499, 613, 1186 |
| MspA1I | CMGCKG | 5 cut(s) | 296, 557, 976, 1105, 1159 |
| MspI | CCGG | 9 cut(s) | 105, 477, 572, 577, 663, 837, 1009, 1029, 1138 |
| Mva1269I | GAATGC | 1 cut(s) | 273 |
| MvaI | CCWGG | 6 cut(s) | 6, 233, 361, 590, 659, 803 |
| NciI | CCSGG | 6 cut(s) | 106, 572, 578, 664, 1010, 1139 |
| NdeII | GATC | 3 cut(s) | 645, 909, 999 |
| NlaIII | CATG | 1 cut(s) | 82 |
| NlaIV | GGNNCC | 5 cut(s) | 59, 179, 180, 570, 972 |
| NmeAIII | GCCGAG | 2 cut(s) | 614, 1031 |
| NmuCI | GTSAC | 1 cut(s) | 169 |
| NsbI | TGCGCA | 1 cut(s) | 553 |
| PaqCI | CACCTGC | 1 cut(s) | 170 |
| PauI | GCGCGC | 1 cut(s) | 762 |
| PciSI | GCTCTTC | 2 cut(s) | 794, 1058 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 382, 459, 468, 519, 882, 1010 |
| PctI | GAATGC | 1 cut(s) | 273 |
| PfeI | GAWTC | 5 cut(s) | 485, 733, 777, 1181, 1196 |
| PfoI | TCCNGGA | 1 cut(s) | 231 |
| Ple19I | CGATCG | 1 cut(s) | 912 |
| PleI | GAGTC | 6 cut(s) | 142, 493, 550, 635, 881, 935 |
| PpsI | GAGTC | 6 cut(s) | 142, 493, 550, 635, 881, 935 |
| Ppu21I | YACGTR | 1 cut(s) | 386 |
| Psp124BI | GAGCTC | 3 cut(s) | 78, 1036, 1236 |
| Psp6I | CCWGG | 6 cut(s) | 4, 231, 359, 588, 657, 801 |
| PspFI | CCCAGC | 3 cut(s) | 125, 594, 1155 |
| PspGI | CCWGG | 6 cut(s) | 4, 231, 359, 588, 657, 801 |
| PspN4I | GGNNCC | 5 cut(s) | 59, 179, 180, 570, 972 |
| PspOMI | GGGCCC | 1 cut(s) | 177 |
| PstI | CTGCAG | 1 cut(s) | 926 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1162 |
| PsuI | RGATCY | 1 cut(s) | 999 |
| PteI | GCGCGC | 1 cut(s) | 762 |
| PvuI | CGATCG | 1 cut(s) | 912 |
| PvuII | CAGCTG | 3 cut(s) | 296, 1105, 1159 |
| RsaI | GTAC | 5 cut(s) | 353, 587, 1022, 1132, 1242 |
| RsaNI | GTAC | 5 cut(s) | 352, 586, 1021, 1131, 1241 |
| Rsr2I | CGGWCCG | 3 cut(s) | 574, 1006, 1135 |
| RsrII | CGGWCCG | 3 cut(s) | 574, 1006, 1135 |
| SacI | GAGCTC | 3 cut(s) | 78, 1036, 1236 |
| SalI | GTCGAC | 1 cut(s) | 704 |
| SapI | GCTCTTC | 2 cut(s) | 794, 1058 |
| Sau3AI | GATC | 3 cut(s) | 645, 909, 999 |
| SchI | GAGTC | 6 cut(s) | 143, 493, 551, 636, 881, 936 |
| SduI | GDGCHC | 6 cut(s) | 62, 78, 181, 1036, 1052, 1236 |
| SfaNI | GCATC | 1 cut(s) | 138 |
| SfcI | CTRYAG | 1 cut(s) | 922 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 833 |
| SinI | GGWCC | 5 cut(s) | 568, 574, 622, 1006, 1135 |
| Sse9I | AATT | 2 cut(s) | 340, 1207 |
| SspMI | CTAG | 1 cut(s) | 71 |
| SstI | GAGCTC | 3 cut(s) | 78, 1036, 1236 |
| StyI | CCWWGG | 2 cut(s) | 718, 864 |
| TaaI | ACNGT | 3 cut(s) | 97, 938, 970 |
| TaiI | ACGT | 2 cut(s) | 388, 657 |
| TaqI | TCGA | 9 cut(s) | 132, 267, 405, 614, 648, 705, 731, 876, 912 |
| TasI | AATT | 2 cut(s) | 340, 1207 |
| TauI | GCSGC | 5 cut(s) | 225, 381, 641, 976, 1088 |
| TfiI | GAWTC | 5 cut(s) | 485, 733, 777, 1181, 1196 |
| TseFI | GTSAC | 1 cut(s) | 169 |
| TseI | GCWGC | 9 cut(s) | 554, 916, 953, 1025, 1102, 1111, 1159, 1162, 1227 |
| Tsp45I | GTSAC | 1 cut(s) | 169 |
| TspGWI | ACGGA | 2 cut(s) | 1031, 1148 |
| VpaK11BI | GGWCC | 5 cut(s) | 568, 574, 622, 1006, 1135 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 230 |
| XapI | RAATTY | 1 cut(s) | 1207 |
| XmiI | GTMKAC | 1 cut(s) | 705 |
| XspI | CTAG | 1 cut(s) | 71 |