Prupe.8G127600_v2.0.a1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
15160081 .. 15161584
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G127600.1

Sequence Viewer

Length: 1251 bp
ATGCCTGGGAGTTTAGAGCCGTTGGATTTGGGGGTGCAGATACCATACCACTTCAGGTGCCCCATATCGCTAGAGCTCATGCGCGACCCCGTTACGGTCAGCACCGGGCAGACCTACGACCGCCCCAGCATCGAGTCGTGGGTCGCCACGGGCAACACCACCTGCCCCGTCACGCGGGCCCCGCTCTCCGACTTCACTCTCATCCCCAACCACACCCTACGCCGCCTTATCCAGGATTGGTGCGTCGCCAACCGCTCTTTCGGCGTCGAGCGCATTCCCACTCCCAAACAGCCAGCTGACCCGACCCACATCCGCCATCTCCTCACCCAATCGGCGTCCAATTCCAACCCGTACCCGACCAGGCTCTCCGCCCTTCGCCGCCTACGTGGCCTCGCCCGCGACCTCGACAAGAACCGCTCCACCATCTCCTCCCAGAACTCCCGCGAAATCCTCGTTCAGCTCGTGTTCGCCGATACCGGCTCGGAATCTTCCGAGTTGACTCACGAGGCGCTCGCGCTTCTCGTTCTGTTCCCGCTCCCAGAGTCCGACTGCGCAGCGGTGGCGTCGGACCCGGACCGGGTAGCGTACCTGGCCCAGCTTGTTCAGCACTCGTCGATGGAGGTCCGAGTCAACTCGGCCGCGTTGATCGAGAACGTCCTGGCCGGGTCGCGGACGGCGGAGCTACGAGCTGAGATTAGCAATGTCGACGAAATCCACCAAGGCGTCGTTTCGATTCTCCGCAACCCAATCGCGTATCCCCGCGCGCTCAAAATCGGAATCAAGGCGCTCTTCGCCTTGTGCCTGGTGAAGCAGACCCGAAACAAGGCCGTATCGGCCGGAGCGCCTGAAACGCTCATCAACACCTTGGCCGACTTCGAGAAATGCGACTCGGAGCGAGCGCTGGCGACGATCGAGCTGCTCTGCAGAGTCCCCGACGGTTGCACGGCGTTTGCTGCTCACGCGCTGACGGTGCCGCTGTTGGTGAAGACGATACTGAAGATCTCGGACCGGGCGACGGAGTACGCTGCCGGAGCTCTGCTGTCGCTGTGCTCGGCGTCGGAGAAGAGCCAAAACGACGCCGTGGCGGCGGGCGTGTTGACGCAGCTGTTGCTGCTGGTGCAGAGTGATTGTACGGACCGGGCCAAGCGGAAGGCCCAGCTGCTGCTGAAGCTTCTTCGGGATTCGTGGCCCGAGGATTCAGTTGGGAATTCTGATGATTTTGTTTGCAGCGAGCTCGTAGTACCATTTTGA

Protein Analysis

417

Amino Acids

45.32

Weight (kDa)

6.1

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
Acc16I TGCGCA 1 cut(s) 553
Acc36I ACCTGC 1 cut(s) 170
AccB1I GGYRCC 2 cut(s) 57, 970
AccBSI CCGCTC 4 cut(s) 184, 255, 417, 535
AccI GTMKAC 1 cut(s) 705
AcoI YGGCCR 4 cut(s) 636, 660, 834, 867
AcsI RAATTY 1 cut(s) 1207
AcuI CTGAAG 3 cut(s) 37, 1016, 1187
AcyI GRCGYC 6 cut(s) 264, 335, 563, 723, 1055, 1077
AfaI GTAC 5 cut(s) 353, 587, 1022, 1132, 1242
AfeI AGCGCT 1 cut(s) 900
AfiI CCNNNNNNNGG 7 cut(s) 94, 174, 232, 577, 669, 823, 1015
AjnI CCWGG 6 cut(s) 4, 231, 359, 588, 657, 801
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
Alw21I GWGCWC 4 cut(s) 78, 1036, 1052, 1236
AlwNI CAGNNNCTG 1 cut(s) 1162
Ama87I CYCGRG 1 cut(s) 1190
Aor51HI AGCGCT 1 cut(s) 900
ApaI GGGCCC 1 cut(s) 181
ApeKI GCWGC 9 cut(s) 554, 916, 953, 1025, 1102, 1111, 1159, 1162, 1227
ApoI RAATTY 1 cut(s) 1207
AsuC2I CCSGG 6 cut(s) 106, 572, 578, 664, 1010, 1139
AsuHPI GGTGA 3 cut(s) 316, 817, 994
AvaI CYCGRG 1 cut(s) 1190
AvaII GGWCC 5 cut(s) 568, 574, 622, 1006, 1135
BaeGI GKGCMC 2 cut(s) 62, 181
BanI GGYRCC 2 cut(s) 57, 970
BanII GRGCYC 4 cut(s) 78, 181, 1036, 1236
BauI CACGAG 2 cut(s) 461, 503
BbsI GAAGAC 1 cut(s) 992
Bbv12I GWGCWC 4 cut(s) 78, 1036, 1052, 1236
BbvI GCAGC 9 cut(s) 566, 903, 940, 1012, 1098, 1114, 1146, 1149, 1239
BccI CCATC 3 cut(s) 324, 431, 610
BceAI ACGGC 5 cut(s) 4, 690, 812, 960, 1064
BcgI CGANNNNNNTGC 6 cut(s) 730, 764, 898, 932, 1216, 1250
BciT130I CCWGG 6 cut(s) 6, 233, 361, 590, 659, 803
BciVI GTATCC 1 cut(s) 765
BcnI CCSGG 6 cut(s) 106, 572, 578, 664, 1010, 1139
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 922
BfoI RGCGCY 4 cut(s) 512, 788, 845, 902
BfuAI ACCTGC 1 cut(s) 170
BfuI GTATCC 1 cut(s) 765
BglI GCCNNNNNGGC 3 cut(s) 387, 833, 1085
BglII AGATCT 1 cut(s) 999
Bme18I GGWCC 5 cut(s) 568, 574, 622, 1006, 1135
BmeT110I CYCGRG 1 cut(s) 1190
BmiI GGNNCC 5 cut(s) 59, 179, 180, 570, 972
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 992
BpuMI CCSGG 6 cut(s) 106, 572, 578, 664, 1010, 1139
BsaAI YACGTR 1 cut(s) 386
BsaHI GRCGYC 6 cut(s) 264, 335, 563, 723, 1055, 1077
BsaJI CCNNGG 6 cut(s) 5, 147, 718, 864, 1080, 1191
Bsc4I CCNNNNNNNGG 7 cut(s) 94, 174, 232, 577, 669, 823, 1015
Bse118I RCCGGY 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 706
BseBI CCWGG 6 cut(s) 6, 233, 361, 590, 659, 803
BseDI CCNNGG 6 cut(s) 5, 147, 718, 864, 1080, 1191
BseGI GGATG 2 cut(s) 201, 309
BseLI CCNNNNNNNGG 7 cut(s) 94, 174, 232, 577, 669, 823, 1015
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 1 cut(s) 681
BsePI GCGCGC 1 cut(s) 762
BseRI GAGGAG 2 cut(s) 311, 418
BseSI GKGCMC 2 cut(s) 62, 181
BseX3I CGGCCG 2 cut(s) 636, 834
BseXI GCAGC 9 cut(s) 566, 903, 940, 1012, 1098, 1114, 1146, 1149, 1239
BseYI CCCAGC 3 cut(s) 125, 594, 1155
BsgI GTGCAG 2 cut(s) 56, 1139
Bsh1285I CGRYCG 4 cut(s) 121, 639, 837, 912
BshNI GGYRCC 2 cut(s) 57, 970
BsiEI CGRYCG 4 cut(s) 121, 639, 837, 912
BsiHKAI GWGCWC 4 cut(s) 78, 1036, 1052, 1236
BsiHKCI CYCGRG 1 cut(s) 1190
BsiSI CCGG 9 cut(s) 105, 477, 572, 577, 663, 837, 1009, 1029, 1138
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 7 cut(s) 94, 174, 232, 577, 669, 823, 1015
BsmFI GGGAC 1 cut(s) 914
BsmI GAATGC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 1190
Bsp120I GGGCCC 1 cut(s) 177
Bsp1286I GDGCHC 6 cut(s) 62, 78, 181, 1036, 1052, 1236
Bsp143I GATC 3 cut(s) 645, 909, 999
BspCNI CTCAG 1 cut(s) 682
BspLI GGNNCC 5 cut(s) 59, 179, 180, 570, 972
BspMAI CTGCAG 1 cut(s) 926
BspMI ACCTGC 1 cut(s) 170
BspQI GCTCTTC 2 cut(s) 794, 1058
BspT107I GGYRCC 2 cut(s) 57, 970
BsrBI CCGCTC 4 cut(s) 184, 255, 417, 535
BsrDI GCAATG 1 cut(s) 706
BsrFI RCCGGY 1 cut(s) 476
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 6 cut(s) 5, 147, 718, 864, 1080, 1191
BssHII GCGCGC 1 cut(s) 762
BssMI GATC 3 cut(s) 645, 909, 999
BssNI GRCGYC 6 cut(s) 264, 335, 563, 723, 1055, 1077
BssSI CACGAG 2 cut(s) 461, 503
BssT1I CCWWGG 2 cut(s) 718, 864
Bst2BI CACGAG 2 cut(s) 461, 503
Bst2UI CCWGG 6 cut(s) 6, 233, 361, 590, 659, 803
Bst4CI ACNGT 3 cut(s) 97, 938, 970
Bst6I CTCTTC 2 cut(s) 794, 1058
BstACI GRCGYC 6 cut(s) 264, 335, 563, 723, 1055, 1077
BstAPI GCANNNNNTGC 1 cut(s) 1108
BstBAI YACGTR 1 cut(s) 386
BstC8I GCNNGC 9 cut(s) 177, 294, 397, 513, 764, 897, 903, 1090, 1232
BstDEI CTNAG 1 cut(s) 690
BstDSI CCRYGG 2 cut(s) 147, 1080
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 2 cut(s) 201, 309
BstH2I RGCGCY 4 cut(s) 512, 788, 845, 902
BstKTI GATC 3 cut(s) 648, 912, 1002
BstMBI GATC 3 cut(s) 645, 909, 999
BstMCI CGRYCG 4 cut(s) 121, 639, 837, 912
BstNI CCWGG 6 cut(s) 6, 233, 361, 590, 659, 803
BstSFI CTRYAG 1 cut(s) 922
BstSLI GKGCMC 2 cut(s) 62, 181
BstV1I GCAGC 9 cut(s) 566, 903, 940, 1012, 1098, 1114, 1146, 1149, 1239
BstV2I GAAGAC 1 cut(s) 992
BstX2I RGATCY 1 cut(s) 999
BstYI RGATCY 1 cut(s) 999
BstZI CGGCCG 2 cut(s) 636, 834
BsuI GTATCC 1 cut(s) 765
BtgI CCRYGG 2 cut(s) 147, 1080
BtsCI GGATG 2 cut(s) 201, 309
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 9 cut(s) 177, 294, 397, 513, 764, 897, 903, 1090, 1232
CaiI CAGNNNCTG 1 cut(s) 1162
Cfr10I RCCGGY 1 cut(s) 476
CpoI CGGWCCG 3 cut(s) 574, 1006, 1135
CseI GACGC 8 cut(s) 232, 253, 324, 552, 712, 1044, 1085, 1108
Csp6I GTAC 5 cut(s) 352, 586, 1021, 1131, 1241
CspI CGGWCCG 3 cut(s) 574, 1006, 1135
CviAII CATG 1 cut(s) 79
CviQI GTAC 5 cut(s) 352, 586, 1021, 1131, 1241
DdeI CTNAG 1 cut(s) 690
DpnI GATC 3 cut(s) 647, 911, 1001
DpnII GATC 3 cut(s) 645, 909, 999
EaeI YGGCCR 4 cut(s) 636, 660, 834, 867
EagI CGGCCG 2 cut(s) 636, 834
Eam1104I CTCTTC 2 cut(s) 794, 1058
EarI CTCTTC 2 cut(s) 794, 1058
EciI GGCGGA 3 cut(s) 302, 358, 692
Ecl136II GAGCTC 3 cut(s) 76, 1034, 1234
EclXI CGGCCG 2 cut(s) 636, 834
Eco130I CCWWGG 2 cut(s) 718, 864
Eco24I GRGCYC 4 cut(s) 78, 181, 1036, 1236
Eco47I GGWCC 5 cut(s) 568, 574, 622, 1006, 1135
Eco47III AGCGCT 1 cut(s) 900
Eco52I CGGCCG 2 cut(s) 636, 834
Eco53kI GAGCTC 3 cut(s) 76, 1034, 1234
Eco57I CTGAAG 3 cut(s) 37, 1016, 1187
Eco88I CYCGRG 1 cut(s) 1190
EcoICRI GAGCTC 3 cut(s) 76, 1034, 1234
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 1207
EcoRII CCWGG 6 cut(s) 4, 231, 359, 588, 657, 801
EcoT14I CCWWGG 2 cut(s) 718, 864
EcoT38I GRGCYC 4 cut(s) 78, 181, 1036, 1236
ErhI CCWWGG 2 cut(s) 718, 864
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 46, 65, 80
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FaqI GGGAC 1 cut(s) 914
FatI CATG 1 cut(s) 78
FauI CCCGC 7 cut(s) 168, 189, 404, 449, 540, 767, 1081
FblI GTMKAC 1 cut(s) 705
FokI GGATG 2 cut(s) 188, 296
FriOI GRGCYC 4 cut(s) 78, 181, 1036, 1236
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 1 cut(s) 553
GsaI CCCAGC 3 cut(s) 129, 598, 1159
HaeII RGCGCY 4 cut(s) 512, 788, 845, 902
HapII CCGG 9 cut(s) 105, 477, 572, 577, 663, 837, 1009, 1029, 1138
HgaI GACGC 8 cut(s) 232, 253, 324, 552, 712, 1044, 1085, 1108
Hin1I GRCGYC 6 cut(s) 264, 335, 563, 723, 1055, 1077
Hin1II CATG 1 cut(s) 82
HincII GTYRAC 4 cut(s) 498, 631, 706, 1098
HindII GTYRAC 4 cut(s) 498, 631, 706, 1098
HindIII AAGCTT 1 cut(s) 1169
HpaII CCGG 9 cut(s) 105, 477, 572, 577, 663, 837, 1009, 1029, 1138
HphI GGTGA 3 cut(s) 316, 817, 994
Hpy166II GTNNAC 4 cut(s) 498, 631, 706, 1098
Hpy188III TCNNGA 4 cut(s) 503, 649, 877, 1178
Hpy8I GTNNAC 4 cut(s) 498, 631, 706, 1098
HpyAV CCTTC 2 cut(s) 383, 1144
HpyCH4III ACNGT 3 cut(s) 97, 938, 970
HpyCH4IV ACGT 2 cut(s) 385, 654
HpyCH4V TGCA 5 cut(s) 37, 924, 942, 1120, 1227
HpyF3I CTNAG 1 cut(s) 690
HpySE526I ACGT 2 cut(s) 385, 654
Hsp92I GRCGYC 6 cut(s) 264, 335, 563, 723, 1055, 1077
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 3 cut(s) 645, 909, 999
LguI GCTCTTC 2 cut(s) 794, 1058
LmnI GCTCC 6 cut(s) 422, 540, 679, 839, 892, 1031
Lsp1109I GCAGC 9 cut(s) 566, 903, 940, 1012, 1098, 1114, 1146, 1149, 1239
LweI GCATC 1 cut(s) 138
MaeI CTAG 1 cut(s) 71
MaeII ACGT 2 cut(s) 385, 654
MaeIII GTNAC 2 cut(s) 91, 169
MalI GATC 3 cut(s) 647, 911, 1001
MbiI CCGCTC 4 cut(s) 184, 255, 417, 535
MboI GATC 3 cut(s) 645, 909, 999
MboII GAAGA 6 cut(s) 480, 781, 997, 1009, 1075, 1166
MflI RGATCY 1 cut(s) 999
MhlI GDGCHC 6 cut(s) 62, 78, 181, 1036, 1052, 1236
MluCI AATT 2 cut(s) 340, 1207
MlyI GAGTC 6 cut(s) 143, 493, 551, 636, 881, 936
MmeI TCCRAC 5 cut(s) 213, 369, 546, 570, 1038
MnlI CCTC 8 cut(s) 332, 401, 413, 439, 461, 499, 613, 1186
MspA1I CMGCKG 5 cut(s) 296, 557, 976, 1105, 1159
MspI CCGG 9 cut(s) 105, 477, 572, 577, 663, 837, 1009, 1029, 1138
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 6 cut(s) 6, 233, 361, 590, 659, 803
NciI CCSGG 6 cut(s) 106, 572, 578, 664, 1010, 1139
NdeII GATC 3 cut(s) 645, 909, 999
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 5 cut(s) 59, 179, 180, 570, 972
NmeAIII GCCGAG 2 cut(s) 614, 1031
NmuCI GTSAC 1 cut(s) 169
NsbI TGCGCA 1 cut(s) 553
PaqCI CACCTGC 1 cut(s) 170
PauI GCGCGC 1 cut(s) 762
PciSI GCTCTTC 2 cut(s) 794, 1058
PcsI WCGNNNNNNNCGW 6 cut(s) 382, 459, 468, 519, 882, 1010
PctI GAATGC 1 cut(s) 273
PfeI GAWTC 5 cut(s) 485, 733, 777, 1181, 1196
PfoI TCCNGGA 1 cut(s) 231
Ple19I CGATCG 1 cut(s) 912
PleI GAGTC 6 cut(s) 142, 493, 550, 635, 881, 935
PpsI GAGTC 6 cut(s) 142, 493, 550, 635, 881, 935
Ppu21I YACGTR 1 cut(s) 386
Psp124BI GAGCTC 3 cut(s) 78, 1036, 1236
Psp6I CCWGG 6 cut(s) 4, 231, 359, 588, 657, 801
PspFI CCCAGC 3 cut(s) 125, 594, 1155
PspGI CCWGG 6 cut(s) 4, 231, 359, 588, 657, 801
PspN4I GGNNCC 5 cut(s) 59, 179, 180, 570, 972
PspOMI GGGCCC 1 cut(s) 177
PstI CTGCAG 1 cut(s) 926
PstNI CAGNNNCTG 1 cut(s) 1162
PsuI RGATCY 1 cut(s) 999
PteI GCGCGC 1 cut(s) 762
PvuI CGATCG 1 cut(s) 912
PvuII CAGCTG 3 cut(s) 296, 1105, 1159
RsaI GTAC 5 cut(s) 353, 587, 1022, 1132, 1242
RsaNI GTAC 5 cut(s) 352, 586, 1021, 1131, 1241
Rsr2I CGGWCCG 3 cut(s) 574, 1006, 1135
RsrII CGGWCCG 3 cut(s) 574, 1006, 1135
SacI GAGCTC 3 cut(s) 78, 1036, 1236
SalI GTCGAC 1 cut(s) 704
SapI GCTCTTC 2 cut(s) 794, 1058
Sau3AI GATC 3 cut(s) 645, 909, 999
SchI GAGTC 6 cut(s) 143, 493, 551, 636, 881, 936
SduI GDGCHC 6 cut(s) 62, 78, 181, 1036, 1052, 1236
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 922
SfiI GGCCNNNNNGGCC 1 cut(s) 833
SinI GGWCC 5 cut(s) 568, 574, 622, 1006, 1135
Sse9I AATT 2 cut(s) 340, 1207
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 3 cut(s) 78, 1036, 1236
StyI CCWWGG 2 cut(s) 718, 864
TaaI ACNGT 3 cut(s) 97, 938, 970
TaiI ACGT 2 cut(s) 388, 657
TaqI TCGA 9 cut(s) 132, 267, 405, 614, 648, 705, 731, 876, 912
TasI AATT 2 cut(s) 340, 1207
TauI GCSGC 5 cut(s) 225, 381, 641, 976, 1088
TfiI GAWTC 5 cut(s) 485, 733, 777, 1181, 1196
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 9 cut(s) 554, 916, 953, 1025, 1102, 1111, 1159, 1162, 1227
Tsp45I GTSAC 1 cut(s) 169
TspGWI ACGGA 2 cut(s) 1031, 1148
VpaK11BI GGWCC 5 cut(s) 568, 574, 622, 1006, 1135
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 1 cut(s) 1207
XmiI GTMKAC 1 cut(s) 705
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.