FvH4_2g05820

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
4786155 .. 4787402
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05820.t1

Sequence Viewer

Length: 1248 bp
ATGCCGGGCAGTTTAGAGCCGCTGGATTTAGTCGGGGTGCAGATTCCCTACCACTTCAGGTGTCCGATCTCTTTAGAGCTCATGCGCGACCCGGTTATCATCAGCACCGGCCAGACCTACGACCGCCACAGCATTGAGTCCTGGGTCGCCACCGGCAACACCACCTGCCCCGTCACCCGGACCCAACTCGCCGACTTCACTCTTATTCCCAACCACACGCTCCGCAGGCTCATCCAGGAGTGGTGCGTCGCCAACCGCTCTTTCGGCGTCGAGAGAATCCCGACGCCGAAGCAGCCTGCGGACCCGACTCTGGTCCGGTCGCTCTTATCGCAGGCCGGGTCGCACTCCAACCCGTACCCGTCCCGGCTCGCCGCGCTGCGACGCCTCAGAGGCCTGGCTCGTGATTTGGATAAGAATCGGGCTATAATCTCCTCCCATATCAGCGCGCGGGAAATCCTCGTGAATATTGTCTTCGGCGACTCCGGCCCGGATTCCGAGCTCAACCGCGAGGCGCTGGCGCTTCTGGTGATGTTGCCGCTTGCGGAGTCGGACTGCGTGGCGGTGGCGTCGGACCCGGACCGGGTCGGGTTCCTGGCGCGGCTCCTGTTCCATAACTCGATGGAGGTCCGGGTCAACTCGGCCGCGTTGATCGAGAACCTCCTGGCCGGGTCGCGGACGGCGGAGCTCCGGGCGCAGATCAGCAATGTGGACGAAATCCACCACGGCGTGATCGAGATTCTCCGCAACCCGATCGCCCATCCACGCGCCTTGAAAATCGGGATCAAAGCGCTTTTCGCGCTGTGCCTGGTGAAGCAGACGCGCGACAAAGCCGTCGCAGCCGGGGCGCCGGAGACGCTGATCAACACCCTCGCGGACTTCGAGAAATGTGACTCAGAGAGGGCGCTGGCGACGATAGAGCTGCTGTGCAGGGTCCCCGAGGGCTGCGCAGCGTTCGCGGCGCACGCGCTGACGGTGCCGCTGCTGGTGAAGACGATACTGAAGATCTCGGACAGGGCGACGGAGTACGCGGCGGGGGCATTATTGTCATTGTGCTCGGAGTCGGAGCAGAGCCAAAACGACGCCGTGGCGGCGGGGATTATGACGCAGCTGTTGCTGCTGGTGCAGAGTGATTGCACGGACCGGGCCAAGCGGAAGGCGCAGCTGCTGCTCAAGCTTCTTCGGGATTCGTGGCCCGAAGATTCTGTCGGAAATTCTGATGACTTTGTTTGCAGCGACGTCGTTTGGTAG

Protein Analysis

416

Amino Acids

45.35

Weight (kDa)

6.09

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 15 - 86 3.8e-21 U-box domain
ARM_PUB PF25598 105 - 408 4.1e-80 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
AasI GACNNNNNNGTC 1 cut(s) 830
AatII GACGTC 1 cut(s) 1239
Acc16I TGCGCA 1 cut(s) 946
Acc36I ACCTGC 1 cut(s) 173
AccB1I GGYRCC 2 cut(s) 844, 973
AccBSI CCGCTC 1 cut(s) 258
AclWI GGATC 1 cut(s) 788
AcoI YGGCCR 3 cut(s) 109, 639, 663
AcsI RAATTY 1 cut(s) 1210
AcuI CTGAAG 2 cut(s) 40, 1019
AcyI GRCGYC 7 cut(s) 267, 284, 382, 566, 845, 1080, 1236
AdeI CACNNNGTG 1 cut(s) 727
AfaI GTAC 2 cut(s) 356, 1025
AfeI AGCGCT 1 cut(s) 789
AfiI CCNNNNNNNGG 4 cut(s) 177, 310, 580, 672
AgsI TTSAA 1 cut(s) 772
AjnI CCWGG 6 cut(s) 140, 234, 393, 591, 660, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 7 cut(s) 79, 499, 685, 919, 1108, 1162, 1174
AluI AGCT 7 cut(s) 79, 499, 685, 919, 1108, 1162, 1174
Alw21I GWGCWC 4 cut(s) 81, 501, 687, 1055
Alw26I GTCTC 1 cut(s) 845
AlwI GGATC 1 cut(s) 788
AlwNI CAGNNNCTG 1 cut(s) 1165
Ama87I CYCGRG 1 cut(s) 935
Aor51HI AGCGCT 1 cut(s) 789
AoxI GGCC 8 cut(s) 109, 333, 391, 484, 639, 663, 1143, 1190
ApoI RAATTY 1 cut(s) 1210
ArsI GACNNNNNNTTYG 2 cut(s) 1188, 1220
AsuHPI GGTGA 4 cut(s) 166, 538, 820, 997
AvaI CYCGRG 1 cut(s) 935
AvaII GGWCC 8 cut(s) 180, 301, 313, 571, 577, 625, 931, 1138
BanI GGYRCC 2 cut(s) 844, 973
BanII GRGCYC 3 cut(s) 81, 501, 687
BauI CACGAG 2 cut(s) 399, 458
BbsI GAAGAC 2 cut(s) 463, 995
Bbv12I GWGCWC 4 cut(s) 81, 501, 687, 1055
BccI CCATC 2 cut(s) 613, 765
BceAI ACGGC 4 cut(s) 693, 739, 815, 1067
BcgI CGANNNNNNTGC 5 cut(s) 733, 767, 901, 935, 1219
BciT130I CCWGG 6 cut(s) 142, 236, 395, 593, 662, 806
BclI TGATCA 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 845
BfoI RGCGCY 5 cut(s) 515, 521, 791, 848, 905
BfuAI ACCTGC 1 cut(s) 173
BglI GCCNNNNNGGC 2 cut(s) 390, 1088
BglII AGATCT 1 cut(s) 1002
Bme18I GGWCC 8 cut(s) 180, 301, 313, 571, 577, 625, 931, 1138
BmeT110I CYCGRG 1 cut(s) 935
BmiI GGNNCC 9 cut(s) 182, 303, 573, 590, 602, 846, 932, 933, 975
BoxI GACNNNNGTC 1 cut(s) 311
BpiI GAAGAC 2 cut(s) 463, 995
BpuEI CTTGAG 1 cut(s) 1154
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 7 cut(s) 267, 284, 382, 566, 845, 1080, 1236
BsaJI CCNNGG 5 cut(s) 141, 721, 840, 936, 1083
BsaWI WCCGGW 1 cut(s) 315
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 310, 580, 672
Bse118I RCCGGY 2 cut(s) 107, 152
Bse3DI GCAATG 1 cut(s) 709
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 6 cut(s) 142, 236, 395, 593, 662, 806
BseDI CCNNGG 5 cut(s) 141, 721, 840, 936, 1083
BseGI GGATG 2 cut(s) 231, 757
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 4 cut(s) 177, 310, 580, 672
BseMI GCAATG 1 cut(s) 709
BseMII CTCAG 2 cut(s) 400, 906
BsePI GCGCGC 1 cut(s) 444
BseRI GAGGAG 1 cut(s) 421
BseX3I CGGCCG 1 cut(s) 639
BsgI GTGCAG 3 cut(s) 59, 946, 1142
Bsh1285I CGRYCG 4 cut(s) 124, 320, 642, 753
BshFI GGCC 8 cut(s) 111, 335, 393, 486, 641, 665, 1145, 1192
BshNI GGYRCC 2 cut(s) 844, 973
BsiEI CGRYCG 4 cut(s) 124, 320, 642, 753
BsiHKAI GWGCWC 4 cut(s) 81, 501, 687, 1055
BsiHKCI CYCGRG 1 cut(s) 935
BslFI GGGAC 2 cut(s) 346, 917
BslI CCNNNNNNNGG 4 cut(s) 177, 310, 580, 672
BsmAI GTCTC 1 cut(s) 845
BsmBI CGTCTC 1 cut(s) 845
BsmFI GGGAC 2 cut(s) 346, 917
BsnI GGCC 8 cut(s) 111, 335, 393, 486, 641, 665, 1145, 1192
BsoBI CYCGRG 1 cut(s) 935
Bsp1286I GDGCHC 4 cut(s) 81, 501, 687, 1055
Bsp143I GATC 8 cut(s) 66, 648, 696, 729, 750, 780, 858, 1002
BspANI GGCC 8 cut(s) 111, 335, 393, 486, 641, 665, 1145, 1192
BspCNI CTCAG 2 cut(s) 399, 905
BspLI GGNNCC 9 cut(s) 182, 303, 573, 590, 602, 846, 932, 933, 975
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 1 cut(s) 788
BspT107I GGYRCC 2 cut(s) 844, 973
BsrBI CCGCTC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 709
BsrFI RCCGGY 2 cut(s) 107, 152
BssAI RCCGGY 2 cut(s) 107, 152
BssECI CCNNGG 5 cut(s) 141, 721, 840, 936, 1083
BssHII GCGCGC 1 cut(s) 444
BssMI GATC 8 cut(s) 66, 648, 696, 729, 750, 780, 858, 1002
BssNI GRCGYC 7 cut(s) 267, 284, 382, 566, 845, 1080, 1236
BssSI CACGAG 2 cut(s) 399, 458
Bst2BI CACGAG 2 cut(s) 399, 458
Bst2UI CCWGG 6 cut(s) 142, 236, 395, 593, 662, 806
Bst4CI ACNGT 1 cut(s) 973
BstACI GRCGYC 7 cut(s) 267, 284, 382, 566, 845, 1080, 1236
BstAPI GCANNNNNTGC 2 cut(s) 1111, 1165
BstC8I GCNNGC 9 cut(s) 227, 297, 333, 369, 446, 516, 540, 906, 963
BstDEI CTNAG 2 cut(s) 386, 892
BstDSI CCRYGG 2 cut(s) 721, 1083
BstF5I GGATG 2 cut(s) 231, 757
BstH2I RGCGCY 5 cut(s) 515, 521, 791, 848, 905
BstKTI GATC 8 cut(s) 69, 651, 699, 732, 753, 783, 861, 1005
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 8 cut(s) 66, 648, 696, 729, 750, 780, 858, 1002
BstMCI CGRYCG 4 cut(s) 124, 320, 642, 753
BstNI CCWGG 6 cut(s) 142, 236, 395, 593, 662, 806
BstPAI GACNNNNGTC 1 cut(s) 311
BstV2I GAAGAC 2 cut(s) 463, 995
BstX2I RGATCY 1 cut(s) 1002
BstYI RGATCY 1 cut(s) 1002
BstZI CGGCCG 1 cut(s) 639
BsuRI GGCC 8 cut(s) 111, 335, 393, 486, 641, 665, 1145, 1192
BtgI CCRYGG 2 cut(s) 721, 1083
BtsCI GGATG 2 cut(s) 231, 757
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 9 cut(s) 227, 297, 333, 369, 446, 516, 540, 906, 963
CaiI CAGNNNCTG 1 cut(s) 1165
Cfr10I RCCGGY 2 cut(s) 107, 152
CpoI CGGWCCG 2 cut(s) 577, 1138
CseI GACGC 9 cut(s) 235, 256, 292, 390, 555, 826, 862, 1088, 1111
Csp6I GTAC 2 cut(s) 355, 1024
CspCI CAANNNNNGTGG 2 cut(s) 750, 785
CspI CGGWCCG 2 cut(s) 577, 1138
CviAII CATG 1 cut(s) 82
CviQI GTAC 2 cut(s) 355, 1024
DdeI CTNAG 2 cut(s) 386, 892
DinI GGCGCC 1 cut(s) 846
DpnI GATC 8 cut(s) 68, 650, 698, 731, 752, 782, 860, 1004
DpnII GATC 8 cut(s) 66, 648, 696, 729, 750, 780, 858, 1002
DraIII CACNNNGTG 1 cut(s) 727
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
EaeI YGGCCR 3 cut(s) 109, 639, 663
EagI CGGCCG 1 cut(s) 639
EciI GGCGGA 1 cut(s) 695
Ecl136II GAGCTC 3 cut(s) 79, 499, 685
EclXI CGGCCG 1 cut(s) 639
Eco147I AGGCCT 1 cut(s) 393
Eco24I GRGCYC 3 cut(s) 81, 501, 687
Eco47I GGWCC 8 cut(s) 180, 301, 313, 571, 577, 625, 931, 1138
Eco47III AGCGCT 1 cut(s) 789
Eco52I CGGCCG 1 cut(s) 639
Eco53kI GAGCTC 3 cut(s) 79, 499, 685
Eco57I CTGAAG 2 cut(s) 40, 1019
Eco88I CYCGRG 1 cut(s) 935
EcoICRI GAGCTC 3 cut(s) 79, 499, 685
EcoO109I RGGNCCY 1 cut(s) 931
EcoRII CCWGG 6 cut(s) 140, 234, 393, 591, 660, 804
EcoT38I GRGCYC 3 cut(s) 81, 501, 687
EgeI GGCGCC 1 cut(s) 846
EheI GGCGCC 1 cut(s) 846
Esp3I CGTCTC 1 cut(s) 845
FaeI CATG 1 cut(s) 85
FaiI YATR 5 cut(s) 83, 425, 438, 612, 1100
FaqI GGGAC 2 cut(s) 346, 917
FatI CATG 1 cut(s) 81
FauI CCCGC 3 cut(s) 441, 1024, 1084
FbaI TGATCA 1 cut(s) 858
FokI GGATG 2 cut(s) 218, 744
FriOI GRGCYC 3 cut(s) 81, 501, 687
FspI TGCGCA 1 cut(s) 946
HaeII RGCGCY 5 cut(s) 515, 521, 791, 848, 905
HaeIII GGCC 8 cut(s) 111, 335, 393, 486, 641, 665, 1145, 1192
HgaI GACGC 9 cut(s) 235, 256, 292, 390, 555, 826, 862, 1088, 1111
Hin1I GRCGYC 7 cut(s) 267, 284, 382, 566, 845, 1080, 1236
Hin1II CATG 1 cut(s) 85
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 1172
HphI GGTGA 4 cut(s) 166, 538, 820, 997
Hpy166II GTNNAC 2 cut(s) 634, 709
Hpy188III TCNNGA 9 cut(s) 271, 280, 401, 460, 652, 733, 778, 880, 1181
Hpy8I GTNNAC 2 cut(s) 634, 709
HpyAV CCTTC 1 cut(s) 1147
HpyCH4III ACNGT 1 cut(s) 973
HpyCH4IV ACGT 1 cut(s) 1236
HpyCH4V TGCA 5 cut(s) 40, 927, 1123, 1134, 1230
HpyF3I CTNAG 2 cut(s) 386, 892
HpySE526I ACGT 1 cut(s) 1236
Hsp92I GRCGYC 7 cut(s) 267, 284, 382, 566, 845, 1080, 1236
Hsp92II CATG 1 cut(s) 85
KasI GGCGCC 1 cut(s) 844
KflI GGGWCCC 1 cut(s) 931
Ksp22I TGATCA 1 cut(s) 858
Kzo9I GATC 8 cut(s) 66, 648, 696, 729, 750, 780, 858, 1002
LmnI GCTCC 5 cut(s) 225, 606, 682, 690, 1063
MaeII ACGT 1 cut(s) 1236
MaeIII GTNAC 2 cut(s) 172, 887
MalI GATC 8 cut(s) 68, 650, 698, 731, 752, 782, 860, 1004
MbiI CCGCTC 1 cut(s) 258
MboI GATC 8 cut(s) 66, 648, 696, 729, 750, 780, 858, 1002
MboII GAAGA 5 cut(s) 463, 1000, 1012, 1169, 1208
MflI RGATCY 1 cut(s) 1002
MhlI GDGCHC 4 cut(s) 81, 501, 687, 1055
MluCI AATT 1 cut(s) 1210
Mly113I GGCGCC 1 cut(s) 845
MlyI GAGTC 6 cut(s) 146, 301, 473, 554, 884, 1067
MmeI TCCRAC 5 cut(s) 372, 528, 549, 1041, 1186
MspA1I CMGCKG 4 cut(s) 22, 979, 1108, 1162
MvaI CCWGG 6 cut(s) 142, 236, 395, 593, 662, 806
NarI GGCGCC 1 cut(s) 845
NdeII GATC 8 cut(s) 66, 648, 696, 729, 750, 780, 858, 1002
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 9 cut(s) 182, 303, 573, 590, 602, 846, 932, 933, 975
NmeAIII GCCGAG 1 cut(s) 617
NmuCI GTSAC 2 cut(s) 172, 887
NsbI TGCGCA 1 cut(s) 946
PaqCI CACCTGC 1 cut(s) 173
PauI GCGCGC 1 cut(s) 444
PceI AGGCCT 1 cut(s) 393
PcsI WCGNNNNNNNCGW 3 cut(s) 729, 876, 1013
PfeI GAWTC 7 cut(s) 43, 276, 415, 491, 736, 1184, 1199
PflFI GACNNNGTC 1 cut(s) 581
PfoI TCCNGGA 1 cut(s) 234
Ple19I CGATCG 1 cut(s) 753
PleI GAGTC 6 cut(s) 145, 301, 473, 553, 884, 1066
PluTI GGCGCC 1 cut(s) 848
PpsI GAGTC 6 cut(s) 145, 301, 473, 553, 884, 1066
PpuMI RGGWCCY 1 cut(s) 931
PshAI GACNNNNGTC 1 cut(s) 311
Psp124BI GAGCTC 3 cut(s) 81, 501, 687
Psp5II RGGWCCY 1 cut(s) 931
Psp6I CCWGG 6 cut(s) 140, 234, 393, 591, 660, 804
PspGI CCWGG 6 cut(s) 140, 234, 393, 591, 660, 804
PspN4I GGNNCC 9 cut(s) 182, 303, 573, 590, 602, 846, 932, 933, 975
PspPPI RGGWCCY 1 cut(s) 931
PstNI CAGNNNCTG 1 cut(s) 1165
PsuI RGATCY 1 cut(s) 1002
PsyI GACNNNGTC 1 cut(s) 581
PteI GCGCGC 1 cut(s) 444
PvuI CGATCG 1 cut(s) 753
PvuII CAGCTG 2 cut(s) 1108, 1162
RsaI GTAC 2 cut(s) 356, 1025
RsaNI GTAC 2 cut(s) 355, 1024
Rsr2I CGGWCCG 2 cut(s) 577, 1138
RsrII CGGWCCG 2 cut(s) 577, 1138
SacI GAGCTC 3 cut(s) 81, 501, 687
Sau3AI GATC 8 cut(s) 66, 648, 696, 729, 750, 780, 858, 1002
SchI GAGTC 6 cut(s) 146, 301, 473, 554, 884, 1067
SduI GDGCHC 4 cut(s) 81, 501, 687, 1055
SfoI GGCGCC 1 cut(s) 846
SinI GGWCC 8 cut(s) 180, 301, 313, 571, 577, 625, 931, 1138
SmlI CTYRAG 1 cut(s) 1169
SmoI CTYRAG 1 cut(s) 1169
Sse9I AATT 1 cut(s) 1210
SseBI AGGCCT 1 cut(s) 393
SspDI GGCGCC 1 cut(s) 844
SspI AATATT 1 cut(s) 466
SstI GAGCTC 3 cut(s) 81, 501, 687
StuI AGGCCT 1 cut(s) 393
TaaI ACNGT 1 cut(s) 973
TaiI ACGT 1 cut(s) 1239
TaqI TCGA 5 cut(s) 270, 617, 651, 732, 879
TasI AATT 1 cut(s) 1210
TauI GCSGC 9 cut(s) 22, 374, 538, 601, 644, 959, 979, 1031, 1091
TfiI GAWTC 7 cut(s) 43, 276, 415, 491, 736, 1184, 1199
TseFI GTSAC 2 cut(s) 172, 887
Tsp45I GTSAC 2 cut(s) 172, 887
TspGWI ACGGA 2 cut(s) 1034, 1151
Tth111I GACNNNGTC 1 cut(s) 581
VpaK11BI GGWCC 8 cut(s) 180, 301, 313, 571, 577, 625, 931, 1138
XapI RAATTY 1 cut(s) 1210
ZraI GACGTC 1 cut(s) 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.