RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G49780 |
| fragaria_vesca | FvH4_2g05820 |
| malus_domestica | MD05G1083200.v1.1 |
| prunus_persica | Prupe.8G127600_v2.0.a1 |
| pyrus_communis | pycom05g08000 |
| rosa_chinensis | RchiOBHm_Chr6g0257831 RchiOBHm_Chr7g0191621 |
| rosa_laevigata | RLG00000005798 RLG00000014730 RLG00000015093 |
| rosa_multiflora | Rmu_co8263605.1_g000001 Rmu_sc0000077.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00110230 Rroxscaffold_7G00165410 |
| rosa_rugosa | Rorug05G0567500 |
| rosa_samantha | Rh6AG084400 Rh6BG079100 Rh6CG073800 Rh6DG070700 |
| rosa_wichuraiana | Rw6G007610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 173 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 830 |
| AatII | GACGTC | 1 cut(s) | 1239 |
| Acc16I | TGCGCA | 1 cut(s) | 946 |
| Acc36I | ACCTGC | 1 cut(s) | 173 |
| AccB1I | GGYRCC | 2 cut(s) | 844, 973 |
| AccBSI | CCGCTC | 1 cut(s) | 258 |
| AclWI | GGATC | 1 cut(s) | 788 |
| AcoI | YGGCCR | 3 cut(s) | 109, 639, 663 |
| AcsI | RAATTY | 1 cut(s) | 1210 |
| AcuI | CTGAAG | 2 cut(s) | 40, 1019 |
| AcyI | GRCGYC | 7 cut(s) | 267, 284, 382, 566, 845, 1080, 1236 |
| AdeI | CACNNNGTG | 1 cut(s) | 727 |
| AfaI | GTAC | 2 cut(s) | 356, 1025 |
| AfeI | AGCGCT | 1 cut(s) | 789 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 177, 310, 580, 672 |
| AgsI | TTSAA | 1 cut(s) | 772 |
| AjnI | CCWGG | 6 cut(s) | 140, 234, 393, 591, 660, 804 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 245, 277 |
| AluBI | AGCT | 7 cut(s) | 79, 499, 685, 919, 1108, 1162, 1174 |
| AluI | AGCT | 7 cut(s) | 79, 499, 685, 919, 1108, 1162, 1174 |
| Alw21I | GWGCWC | 4 cut(s) | 81, 501, 687, 1055 |
| Alw26I | GTCTC | 1 cut(s) | 845 |
| AlwI | GGATC | 1 cut(s) | 788 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1165 |
| Ama87I | CYCGRG | 1 cut(s) | 935 |
| Aor51HI | AGCGCT | 1 cut(s) | 789 |
| AoxI | GGCC | 8 cut(s) | 109, 333, 391, 484, 639, 663, 1143, 1190 |
| ApoI | RAATTY | 1 cut(s) | 1210 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1188, 1220 |
| AsuHPI | GGTGA | 4 cut(s) | 166, 538, 820, 997 |
| AvaI | CYCGRG | 1 cut(s) | 935 |
| AvaII | GGWCC | 8 cut(s) | 180, 301, 313, 571, 577, 625, 931, 1138 |
| BanI | GGYRCC | 2 cut(s) | 844, 973 |
| BanII | GRGCYC | 3 cut(s) | 81, 501, 687 |
| BauI | CACGAG | 2 cut(s) | 399, 458 |
| BbsI | GAAGAC | 2 cut(s) | 463, 995 |
| Bbv12I | GWGCWC | 4 cut(s) | 81, 501, 687, 1055 |
| BccI | CCATC | 2 cut(s) | 613, 765 |
| BceAI | ACGGC | 4 cut(s) | 693, 739, 815, 1067 |
| BcgI | CGANNNNNNTGC | 5 cut(s) | 733, 767, 901, 935, 1219 |
| BciT130I | CCWGG | 6 cut(s) | 142, 236, 395, 593, 662, 806 |
| BclI | TGATCA | 1 cut(s) | 858 |
| BcoDI | GTCTC | 1 cut(s) | 845 |
| BfoI | RGCGCY | 5 cut(s) | 515, 521, 791, 848, 905 |
| BfuAI | ACCTGC | 1 cut(s) | 173 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 390, 1088 |
| BglII | AGATCT | 1 cut(s) | 1002 |
| Bme18I | GGWCC | 8 cut(s) | 180, 301, 313, 571, 577, 625, 931, 1138 |
| BmeT110I | CYCGRG | 1 cut(s) | 935 |
| BmiI | GGNNCC | 9 cut(s) | 182, 303, 573, 590, 602, 846, 932, 933, 975 |
| BoxI | GACNNNNGTC | 1 cut(s) | 311 |
| BpiI | GAAGAC | 2 cut(s) | 463, 995 |
| BpuEI | CTTGAG | 1 cut(s) | 1154 |
| BsaBI | GATNNNNATC | 1 cut(s) | 414 |
| BsaHI | GRCGYC | 7 cut(s) | 267, 284, 382, 566, 845, 1080, 1236 |
| BsaJI | CCNNGG | 5 cut(s) | 141, 721, 840, 936, 1083 |
| BsaWI | WCCGGW | 1 cut(s) | 315 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 177, 310, 580, 672 |
| Bse118I | RCCGGY | 2 cut(s) | 107, 152 |
| Bse3DI | GCAATG | 1 cut(s) | 709 |
| Bse8I | GATNNNNATC | 1 cut(s) | 414 |
| BseBI | CCWGG | 6 cut(s) | 142, 236, 395, 593, 662, 806 |
| BseDI | CCNNGG | 5 cut(s) | 141, 721, 840, 936, 1083 |
| BseGI | GGATG | 2 cut(s) | 231, 757 |
| BseJI | GATNNNNATC | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 177, 310, 580, 672 |
| BseMI | GCAATG | 1 cut(s) | 709 |
| BseMII | CTCAG | 2 cut(s) | 400, 906 |
| BsePI | GCGCGC | 1 cut(s) | 444 |
| BseRI | GAGGAG | 1 cut(s) | 421 |
| BseX3I | CGGCCG | 1 cut(s) | 639 |
| BsgI | GTGCAG | 3 cut(s) | 59, 946, 1142 |
| Bsh1285I | CGRYCG | 4 cut(s) | 124, 320, 642, 753 |
| BshFI | GGCC | 8 cut(s) | 111, 335, 393, 486, 641, 665, 1145, 1192 |
| BshNI | GGYRCC | 2 cut(s) | 844, 973 |
| BsiEI | CGRYCG | 4 cut(s) | 124, 320, 642, 753 |
| BsiHKAI | GWGCWC | 4 cut(s) | 81, 501, 687, 1055 |
| BsiHKCI | CYCGRG | 1 cut(s) | 935 |
| BslFI | GGGAC | 2 cut(s) | 346, 917 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 177, 310, 580, 672 |
| BsmAI | GTCTC | 1 cut(s) | 845 |
| BsmBI | CGTCTC | 1 cut(s) | 845 |
| BsmFI | GGGAC | 2 cut(s) | 346, 917 |
| BsnI | GGCC | 8 cut(s) | 111, 335, 393, 486, 641, 665, 1145, 1192 |
| BsoBI | CYCGRG | 1 cut(s) | 935 |
| Bsp1286I | GDGCHC | 4 cut(s) | 81, 501, 687, 1055 |
| Bsp143I | GATC | 8 cut(s) | 66, 648, 696, 729, 750, 780, 858, 1002 |
| BspANI | GGCC | 8 cut(s) | 111, 335, 393, 486, 641, 665, 1145, 1192 |
| BspCNI | CTCAG | 2 cut(s) | 399, 905 |
| BspLI | GGNNCC | 9 cut(s) | 182, 303, 573, 590, 602, 846, 932, 933, 975 |
| BspMI | ACCTGC | 1 cut(s) | 173 |
| BspPI | GGATC | 1 cut(s) | 788 |
| BspT107I | GGYRCC | 2 cut(s) | 844, 973 |
| BsrBI | CCGCTC | 1 cut(s) | 258 |
| BsrDI | GCAATG | 1 cut(s) | 709 |
| BsrFI | RCCGGY | 2 cut(s) | 107, 152 |
| BssAI | RCCGGY | 2 cut(s) | 107, 152 |
| BssECI | CCNNGG | 5 cut(s) | 141, 721, 840, 936, 1083 |
| BssHII | GCGCGC | 1 cut(s) | 444 |
| BssMI | GATC | 8 cut(s) | 66, 648, 696, 729, 750, 780, 858, 1002 |
| BssNI | GRCGYC | 7 cut(s) | 267, 284, 382, 566, 845, 1080, 1236 |
| BssSI | CACGAG | 2 cut(s) | 399, 458 |
| Bst2BI | CACGAG | 2 cut(s) | 399, 458 |
| Bst2UI | CCWGG | 6 cut(s) | 142, 236, 395, 593, 662, 806 |
| Bst4CI | ACNGT | 1 cut(s) | 973 |
| BstACI | GRCGYC | 7 cut(s) | 267, 284, 382, 566, 845, 1080, 1236 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1111, 1165 |
| BstC8I | GCNNGC | 9 cut(s) | 227, 297, 333, 369, 446, 516, 540, 906, 963 |
| BstDEI | CTNAG | 2 cut(s) | 386, 892 |
| BstDSI | CCRYGG | 2 cut(s) | 721, 1083 |
| BstF5I | GGATG | 2 cut(s) | 231, 757 |
| BstH2I | RGCGCY | 5 cut(s) | 515, 521, 791, 848, 905 |
| BstKTI | GATC | 8 cut(s) | 69, 651, 699, 732, 753, 783, 861, 1005 |
| BstMAI | GTCTC | 1 cut(s) | 845 |
| BstMBI | GATC | 8 cut(s) | 66, 648, 696, 729, 750, 780, 858, 1002 |
| BstMCI | CGRYCG | 4 cut(s) | 124, 320, 642, 753 |
| BstNI | CCWGG | 6 cut(s) | 142, 236, 395, 593, 662, 806 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 311 |
| BstV2I | GAAGAC | 2 cut(s) | 463, 995 |
| BstX2I | RGATCY | 1 cut(s) | 1002 |
| BstYI | RGATCY | 1 cut(s) | 1002 |
| BstZI | CGGCCG | 1 cut(s) | 639 |
| BsuRI | GGCC | 8 cut(s) | 111, 335, 393, 486, 641, 665, 1145, 1192 |
| BtgI | CCRYGG | 2 cut(s) | 721, 1083 |
| BtsCI | GGATG | 2 cut(s) | 231, 757 |
| BveI | ACCTGC | 1 cut(s) | 173 |
| Cac8I | GCNNGC | 9 cut(s) | 227, 297, 333, 369, 446, 516, 540, 906, 963 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1165 |
| Cfr10I | RCCGGY | 2 cut(s) | 107, 152 |
| CpoI | CGGWCCG | 2 cut(s) | 577, 1138 |
| CseI | GACGC | 9 cut(s) | 235, 256, 292, 390, 555, 826, 862, 1088, 1111 |
| Csp6I | GTAC | 2 cut(s) | 355, 1024 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 750, 785 |
| CspI | CGGWCCG | 2 cut(s) | 577, 1138 |
| CviAII | CATG | 1 cut(s) | 82 |
| CviQI | GTAC | 2 cut(s) | 355, 1024 |
| DdeI | CTNAG | 2 cut(s) | 386, 892 |
| DinI | GGCGCC | 1 cut(s) | 846 |
| DpnI | GATC | 8 cut(s) | 68, 650, 698, 731, 752, 782, 860, 1004 |
| DpnII | GATC | 8 cut(s) | 66, 648, 696, 729, 750, 780, 858, 1002 |
| DraIII | CACNNNGTG | 1 cut(s) | 727 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 830 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 830 |
| EaeI | YGGCCR | 3 cut(s) | 109, 639, 663 |
| EagI | CGGCCG | 1 cut(s) | 639 |
| EciI | GGCGGA | 1 cut(s) | 695 |
| Ecl136II | GAGCTC | 3 cut(s) | 79, 499, 685 |
| EclXI | CGGCCG | 1 cut(s) | 639 |
| Eco147I | AGGCCT | 1 cut(s) | 393 |
| Eco24I | GRGCYC | 3 cut(s) | 81, 501, 687 |
| Eco47I | GGWCC | 8 cut(s) | 180, 301, 313, 571, 577, 625, 931, 1138 |
| Eco47III | AGCGCT | 1 cut(s) | 789 |
| Eco52I | CGGCCG | 1 cut(s) | 639 |
| Eco53kI | GAGCTC | 3 cut(s) | 79, 499, 685 |
| Eco57I | CTGAAG | 2 cut(s) | 40, 1019 |
| Eco88I | CYCGRG | 1 cut(s) | 935 |
| EcoICRI | GAGCTC | 3 cut(s) | 79, 499, 685 |
| EcoO109I | RGGNCCY | 1 cut(s) | 931 |
| EcoRII | CCWGG | 6 cut(s) | 140, 234, 393, 591, 660, 804 |
| EcoT38I | GRGCYC | 3 cut(s) | 81, 501, 687 |
| EgeI | GGCGCC | 1 cut(s) | 846 |
| EheI | GGCGCC | 1 cut(s) | 846 |
| Esp3I | CGTCTC | 1 cut(s) | 845 |
| FaeI | CATG | 1 cut(s) | 85 |
| FaiI | YATR | 5 cut(s) | 83, 425, 438, 612, 1100 |
| FaqI | GGGAC | 2 cut(s) | 346, 917 |
| FatI | CATG | 1 cut(s) | 81 |
| FauI | CCCGC | 3 cut(s) | 441, 1024, 1084 |
| FbaI | TGATCA | 1 cut(s) | 858 |
| FokI | GGATG | 2 cut(s) | 218, 744 |
| FriOI | GRGCYC | 3 cut(s) | 81, 501, 687 |
| FspI | TGCGCA | 1 cut(s) | 946 |
| HaeII | RGCGCY | 5 cut(s) | 515, 521, 791, 848, 905 |
| HaeIII | GGCC | 8 cut(s) | 111, 335, 393, 486, 641, 665, 1145, 1192 |
| HgaI | GACGC | 9 cut(s) | 235, 256, 292, 390, 555, 826, 862, 1088, 1111 |
| Hin1I | GRCGYC | 7 cut(s) | 267, 284, 382, 566, 845, 1080, 1236 |
| Hin1II | CATG | 1 cut(s) | 85 |
| HincII | GTYRAC | 1 cut(s) | 634 |
| HindII | GTYRAC | 1 cut(s) | 634 |
| HindIII | AAGCTT | 1 cut(s) | 1172 |
| HphI | GGTGA | 4 cut(s) | 166, 538, 820, 997 |
| Hpy166II | GTNNAC | 2 cut(s) | 634, 709 |
| Hpy188III | TCNNGA | 9 cut(s) | 271, 280, 401, 460, 652, 733, 778, 880, 1181 |
| Hpy8I | GTNNAC | 2 cut(s) | 634, 709 |
| HpyAV | CCTTC | 1 cut(s) | 1147 |
| HpyCH4III | ACNGT | 1 cut(s) | 973 |
| HpyCH4IV | ACGT | 1 cut(s) | 1236 |
| HpyCH4V | TGCA | 5 cut(s) | 40, 927, 1123, 1134, 1230 |
| HpyF3I | CTNAG | 2 cut(s) | 386, 892 |
| HpySE526I | ACGT | 1 cut(s) | 1236 |
| Hsp92I | GRCGYC | 7 cut(s) | 267, 284, 382, 566, 845, 1080, 1236 |
| Hsp92II | CATG | 1 cut(s) | 85 |
| KasI | GGCGCC | 1 cut(s) | 844 |
| KflI | GGGWCCC | 1 cut(s) | 931 |
| Ksp22I | TGATCA | 1 cut(s) | 858 |
| Kzo9I | GATC | 8 cut(s) | 66, 648, 696, 729, 750, 780, 858, 1002 |
| LmnI | GCTCC | 5 cut(s) | 225, 606, 682, 690, 1063 |
| MaeII | ACGT | 1 cut(s) | 1236 |
| MaeIII | GTNAC | 2 cut(s) | 172, 887 |
| MalI | GATC | 8 cut(s) | 68, 650, 698, 731, 752, 782, 860, 1004 |
| MbiI | CCGCTC | 1 cut(s) | 258 |
| MboI | GATC | 8 cut(s) | 66, 648, 696, 729, 750, 780, 858, 1002 |
| MboII | GAAGA | 5 cut(s) | 463, 1000, 1012, 1169, 1208 |
| MflI | RGATCY | 1 cut(s) | 1002 |
| MhlI | GDGCHC | 4 cut(s) | 81, 501, 687, 1055 |
| MluCI | AATT | 1 cut(s) | 1210 |
| Mly113I | GGCGCC | 1 cut(s) | 845 |
| MlyI | GAGTC | 6 cut(s) | 146, 301, 473, 554, 884, 1067 |
| MmeI | TCCRAC | 5 cut(s) | 372, 528, 549, 1041, 1186 |
| MspA1I | CMGCKG | 4 cut(s) | 22, 979, 1108, 1162 |
| MvaI | CCWGG | 6 cut(s) | 142, 236, 395, 593, 662, 806 |
| NarI | GGCGCC | 1 cut(s) | 845 |
| NdeII | GATC | 8 cut(s) | 66, 648, 696, 729, 750, 780, 858, 1002 |
| NlaIII | CATG | 1 cut(s) | 85 |
| NlaIV | GGNNCC | 9 cut(s) | 182, 303, 573, 590, 602, 846, 932, 933, 975 |
| NmeAIII | GCCGAG | 1 cut(s) | 617 |
| NmuCI | GTSAC | 2 cut(s) | 172, 887 |
| NsbI | TGCGCA | 1 cut(s) | 946 |
| PaqCI | CACCTGC | 1 cut(s) | 173 |
| PauI | GCGCGC | 1 cut(s) | 444 |
| PceI | AGGCCT | 1 cut(s) | 393 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 729, 876, 1013 |
| PfeI | GAWTC | 7 cut(s) | 43, 276, 415, 491, 736, 1184, 1199 |
| PflFI | GACNNNGTC | 1 cut(s) | 581 |
| PfoI | TCCNGGA | 1 cut(s) | 234 |
| Ple19I | CGATCG | 1 cut(s) | 753 |
| PleI | GAGTC | 6 cut(s) | 145, 301, 473, 553, 884, 1066 |
| PluTI | GGCGCC | 1 cut(s) | 848 |
| PpsI | GAGTC | 6 cut(s) | 145, 301, 473, 553, 884, 1066 |
| PpuMI | RGGWCCY | 1 cut(s) | 931 |
| PshAI | GACNNNNGTC | 1 cut(s) | 311 |
| Psp124BI | GAGCTC | 3 cut(s) | 81, 501, 687 |
| Psp5II | RGGWCCY | 1 cut(s) | 931 |
| Psp6I | CCWGG | 6 cut(s) | 140, 234, 393, 591, 660, 804 |
| PspGI | CCWGG | 6 cut(s) | 140, 234, 393, 591, 660, 804 |
| PspN4I | GGNNCC | 9 cut(s) | 182, 303, 573, 590, 602, 846, 932, 933, 975 |
| PspPPI | RGGWCCY | 1 cut(s) | 931 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1165 |
| PsuI | RGATCY | 1 cut(s) | 1002 |
| PsyI | GACNNNGTC | 1 cut(s) | 581 |
| PteI | GCGCGC | 1 cut(s) | 444 |
| PvuI | CGATCG | 1 cut(s) | 753 |
| PvuII | CAGCTG | 2 cut(s) | 1108, 1162 |
| RsaI | GTAC | 2 cut(s) | 356, 1025 |
| RsaNI | GTAC | 2 cut(s) | 355, 1024 |
| Rsr2I | CGGWCCG | 2 cut(s) | 577, 1138 |
| RsrII | CGGWCCG | 2 cut(s) | 577, 1138 |
| SacI | GAGCTC | 3 cut(s) | 81, 501, 687 |
| Sau3AI | GATC | 8 cut(s) | 66, 648, 696, 729, 750, 780, 858, 1002 |
| SchI | GAGTC | 6 cut(s) | 146, 301, 473, 554, 884, 1067 |
| SduI | GDGCHC | 4 cut(s) | 81, 501, 687, 1055 |
| SfoI | GGCGCC | 1 cut(s) | 846 |
| SinI | GGWCC | 8 cut(s) | 180, 301, 313, 571, 577, 625, 931, 1138 |
| SmlI | CTYRAG | 1 cut(s) | 1169 |
| SmoI | CTYRAG | 1 cut(s) | 1169 |
| Sse9I | AATT | 1 cut(s) | 1210 |
| SseBI | AGGCCT | 1 cut(s) | 393 |
| SspDI | GGCGCC | 1 cut(s) | 844 |
| SspI | AATATT | 1 cut(s) | 466 |
| SstI | GAGCTC | 3 cut(s) | 81, 501, 687 |
| StuI | AGGCCT | 1 cut(s) | 393 |
| TaaI | ACNGT | 1 cut(s) | 973 |
| TaiI | ACGT | 1 cut(s) | 1239 |
| TaqI | TCGA | 5 cut(s) | 270, 617, 651, 732, 879 |
| TasI | AATT | 1 cut(s) | 1210 |
| TauI | GCSGC | 9 cut(s) | 22, 374, 538, 601, 644, 959, 979, 1031, 1091 |
| TfiI | GAWTC | 7 cut(s) | 43, 276, 415, 491, 736, 1184, 1199 |
| TseFI | GTSAC | 2 cut(s) | 172, 887 |
| Tsp45I | GTSAC | 2 cut(s) | 172, 887 |
| TspGWI | ACGGA | 2 cut(s) | 1034, 1151 |
| Tth111I | GACNNNGTC | 1 cut(s) | 581 |
| VpaK11BI | GGWCC | 8 cut(s) | 180, 301, 313, 571, 577, 625, 931, 1138 |
| XapI | RAATTY | 1 cut(s) | 1210 |
| ZraI | GACGTC | 1 cut(s) | 1237 |