Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8263605.1

Orthogroup ID

OG0011283

Physical Location & Seq

Genomic Coordinates Forward (+)

16 .. 735

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8263605.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgttcccgctcgccgagtccgactgcgtggcggtggcgtcggacccggaccgggtcgggttcctggcccggctcctcttccacaattcgatggaggtccgactcaactcggccgcgttgatcgagaacctgctggccgggtcgcggacggcggagctccgagcgcagataagcaatgtggatgaaatccaccgaggcgtgatcgaaattctccggaacccaatcgctcacccgcgggctctgaaaatcggaatcaaagccttgttcgcgttgtgcctggtgaaacagacacgtgagaaggccgtggcggccggagcgccggagacgctgatcaacactctcgccgacttcgagaaatgcgactcggagagggccctggccaccatagagctcctctgccgcatccccgaagggtgcagcgcgttcgcggcgcacgcgctgacggtgccgctgctggtgaagacgatactgaagatctcggaccgggcgacggagtacgcggcgggggcacttttgtcattgtgctcggagtcggagcagagccaaaacgacgccgtggcggcggggattatgacgcagctgttactgctggtgcagagtgattgcacggaccgggcgaagaggaaggcgcagctgctgctgaagcttcttcgggattcgtggcccgaagattctgtcggaaattcggatgactttgtttgcagcgacgtcgtatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

239

Amino Acids

25.92

Weight (kDa)

5.31

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49780
fragaria_vesca	FvH4_2g05820
malus_domestica	MD05G1083200.v1.1
prunus_persica	Prupe.8G127600_v2.0.a1
pyrus_communis	pycom05g08000
rosa_chinensis	RchiOBHm_Chr6g0257831 RchiOBHm_Chr7g0191621
rosa_laevigata	RLG00000005798 RLG00000014730 RLG00000015093
rosa_multiflora	Rmu_co8263605.1_g000001 Rmu_sc0000077.1_g000008
rosa_roxburghii	Rroxscaffold_2G00110230 Rroxscaffold_7G00165410
rosa_rugosa	Rorug05G0567500
rosa_samantha	Rh6AG084400 Rh6BG079100 Rh6CG073800 Rh6DG070700
rosa_wichuraiana	Rw6G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	711
Acc36I	ACCTGC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	445
AccBSI	CCGCTC	1 cut(s)	10
AccII	CGCG	8 cut(s)	116, 145, 235, 269, 422, 428, 437, 500
AccIII	TCCGGA	1 cut(s)	213
AcoI	YGGCCR	4 cut(s)	111, 135, 309, 378
AcsI	RAATTY	2 cut(s)	207, 682
AcuI	CTGAAG	2 cut(s)	491, 662
AcvI	CACGTG	1 cut(s)	293
AcyI	GRCGYC	3 cut(s)	38, 552, 708
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	52, 144, 490
AflIII	ACRYGT	1 cut(s)	290
AjnI	CCWGG	3 cut(s)	63, 276, 375
AluBI	AGCT	5 cut(s)	157, 391, 580, 634, 646
AluI	AGCT	5 cut(s)	157, 391, 580, 634, 646
Alw21I	GWGCWC	3 cut(s)	159, 393, 527
Alw26I	GTCTC	1 cut(s)	317
AlwNI	CAGNNNCTG	1 cut(s)	637
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	8 cut(s)	66, 111, 135, 300, 309, 372, 378, 662
ApaI	GGGCCC	1 cut(s)	376
ApeKI	GCWGC	7 cut(s)	417, 451, 577, 631, 634, 637, 702
ApoI	RAATTY	2 cut(s)	207, 682
ArsI	GACNNNNNNTTYG	2 cut(s)	660, 692
AspLEI	GCGC	6 cut(s)	166, 319, 422, 433, 439, 631
AspS9I	GGNCC	9 cut(s)	43, 49, 67, 97, 372, 373, 481, 610, 663
AsuC2I	CCSGG	6 cut(s)	47, 53, 70, 139, 485, 614
AsuHPI	GGTGA	3 cut(s)	221, 292, 469
AvaII	GGWCC	5 cut(s)	43, 49, 97, 481, 610
BaeGI	GKGCMC	2 cut(s)	376, 511
BalI	TGGCCA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	4 cut(s)	159, 241, 376, 393
BbrPI	CACGTG	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	3 cut(s)	159, 393, 527
BbvI	GCAGC	7 cut(s)	429, 438, 589, 621, 624, 643, 714
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	3 cut(s)	165, 287, 539
BcgI	CGANNNNNNTGC	3 cut(s)	406, 440, 691
BciT130I	CCWGG	3 cut(s)	65, 278, 377
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	6 cut(s)	47, 53, 70, 139, 485, 614
BcoDI	GTCTC	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	138
BglI	GCCNNNNNGGC	2 cut(s)	308, 560
BglII	AGATCT	1 cut(s)	474
Bme1390I	CCNGG	9 cut(s)	47, 53, 65, 70, 139, 278, 377, 485, 614
Bme18I	GGWCC	5 cut(s)	43, 49, 97, 481, 610
BmgT120I	GGNCC	9 cut(s)	43, 49, 67, 97, 372, 373, 481, 610, 663
BmiI	GGNNCC	6 cut(s)	45, 62, 74, 218, 374, 447
BmrFI	CCNGG	9 cut(s)	47, 53, 65, 70, 139, 278, 377, 485, 614
BmsI	GCATC	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	467
BpuMI	CCSGG	6 cut(s)	47, 53, 70, 139, 485, 614
BsaAI	YACGTR	1 cut(s)	293
BsaHI	GRCGYC	3 cut(s)	38, 552, 708
BsaJI	CCNNGG	5 cut(s)	193, 233, 303, 375, 555
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 144, 490
Bse3DI	GCAATG	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	3 cut(s)	65, 278, 377
BseDI	CCNNGG	5 cut(s)	193, 233, 303, 375, 555
BseGI	GGATG	3 cut(s)	187, 402, 694
BseLI	CCNNNNNNNGG	3 cut(s)	52, 144, 490
BseMI	GCAATG	1 cut(s)	181
BseRI	GAGGAG	2 cut(s)	65, 383
BseSI	GKGCMC	2 cut(s)	376, 511
BseX3I	CGGCCG	2 cut(s)	111, 309
BseXI	GCAGC	7 cut(s)	429, 438, 589, 621, 624, 643, 714
BsgI	GTGCAG	2 cut(s)	436, 614
Bsh1236I	CGCG	8 cut(s)	116, 145, 235, 269, 422, 428, 437, 500
Bsh1285I	CGRYCG	2 cut(s)	114, 312
BshFI	GGCC	8 cut(s)	68, 113, 137, 302, 311, 374, 380, 664
BshNI	GGYRCC	1 cut(s)	445
BsiEI	CGRYCG	2 cut(s)	114, 312
BsiHKAI	GWGCWC	3 cut(s)	159, 393, 527
BsiSI	CCGG	9 cut(s)	47, 52, 70, 138, 214, 312, 320, 484, 613
BslI	CCNNNNNNNGG	3 cut(s)	52, 144, 490
BsmAI	GTCTC	1 cut(s)	317
BsmBI	CGTCTC	1 cut(s)	317
BsnI	GGCC	8 cut(s)	68, 113, 137, 302, 311, 374, 380, 664
Bsp120I	GGGCCC	1 cut(s)	372
Bsp1286I	GDGCHC	6 cut(s)	159, 241, 376, 393, 511, 527
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	120, 201, 330, 474
BspANI	GGCC	8 cut(s)	68, 113, 137, 302, 311, 374, 380, 664
BspEI	TCCGGA	1 cut(s)	213
BspFNI	CGCG	8 cut(s)	116, 145, 235, 269, 422, 428, 437, 500
BspLI	GGNNCC	6 cut(s)	45, 62, 74, 218, 374, 447
BspMI	ACCTGC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	445
BsrBI	CCGCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	181
BssECI	CCNNGG	5 cut(s)	193, 233, 303, 375, 555
BssMI	GATC	4 cut(s)	120, 201, 330, 474
BssNI	GRCGYC	3 cut(s)	38, 552, 708
Bst2UI	CCWGG	3 cut(s)	65, 278, 377
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	2 cut(s)	83, 614
BstACI	GRCGYC	3 cut(s)	38, 552, 708
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	4 cut(s)	12, 135, 237, 435
BstDSI	CCRYGG	3 cut(s)	233, 303, 555
BstF5I	GGATG	3 cut(s)	187, 402, 694
BstFNI	CGCG	8 cut(s)	116, 145, 235, 269, 422, 428, 437, 500
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	6 cut(s)	166, 319, 422, 433, 439, 631
BstKTI	GATC	4 cut(s)	123, 204, 333, 477
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	4 cut(s)	120, 201, 330, 474
BstMCI	CGRYCG	2 cut(s)	114, 312
BstNI	CCWGG	3 cut(s)	65, 278, 377
BstSCI	CCNGG	9 cut(s)	45, 51, 63, 68, 137, 276, 375, 483, 612
BstSLI	GKGCMC	2 cut(s)	376, 511
BstUI	CGCG	8 cut(s)	116, 145, 235, 269, 422, 428, 437, 500
BstV1I	GCAGC	7 cut(s)	429, 438, 589, 621, 624, 643, 714
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BstZI	CGGCCG	2 cut(s)	111, 309
BsuRI	GGCC	8 cut(s)	68, 113, 137, 302, 311, 374, 380, 664
BtgI	CCRYGG	3 cut(s)	233, 303, 555
BtsCI	GGATG	3 cut(s)	187, 402, 694
BveI	ACCTGC	1 cut(s)	138
Cac8I	GCNNGC	4 cut(s)	12, 135, 237, 435
CaiI	CAGNNNCTG	1 cut(s)	637
CfoI	GCGC	6 cut(s)	166, 319, 422, 433, 439, 631
Cfr13I	GGNCC	9 cut(s)	43, 49, 67, 97, 372, 373, 481, 610, 663
Cfr42I	CCGCGG	1 cut(s)	236
CpoI	CGGWCCG	3 cut(s)	49, 481, 610
CseI	GACGC	4 cut(s)	27, 334, 560, 583
Csp6I	GTAC	1 cut(s)	496
CspI	CGGWCCG	3 cut(s)	49, 481, 610
CviQI	GTAC	1 cut(s)	496
DpnI	GATC	4 cut(s)	122, 203, 332, 476
DpnII	GATC	4 cut(s)	120, 201, 330, 474
EaeI	YGGCCR	4 cut(s)	111, 135, 309, 378
EagI	CGGCCG	2 cut(s)	111, 309
Eam1104I	CTCTTC	2 cut(s)	83, 614
EarI	CTCTTC	2 cut(s)	83, 614
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	2 cut(s)	157, 391
EclXI	CGGCCG	2 cut(s)	111, 309
Eco24I	GRGCYC	4 cut(s)	159, 241, 376, 393
Eco47I	GGWCC	5 cut(s)	43, 49, 97, 481, 610
Eco52I	CGGCCG	2 cut(s)	111, 309
Eco53kI	GAGCTC	2 cut(s)	157, 391
Eco57I	CTGAAG	2 cut(s)	491, 662
Eco72I	CACGTG	1 cut(s)	293
EcoICRI	GAGCTC	2 cut(s)	157, 391
EcoO109I	RGGNCCY	2 cut(s)	372, 373
EcoRII	CCWGG	3 cut(s)	63, 276, 375
EcoT38I	GRGCYC	4 cut(s)	159, 241, 376, 393
Esp3I	CGTCTC	1 cut(s)	317
FaiI	YATR	3 cut(s)	386, 572, 715
FauI	CCCGC	5 cut(s)	15, 228, 240, 496, 556
FbaI	TGATCA	1 cut(s)	330
FokI	GGATG	3 cut(s)	194, 389, 701
FriOI	GRGCYC	4 cut(s)	159, 241, 376, 393
GlaI	GCGC	6 cut(s)	165, 318, 421, 432, 438, 630
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	8 cut(s)	68, 113, 137, 302, 311, 374, 380, 664
HapII	CCGG	9 cut(s)	47, 52, 70, 138, 214, 312, 320, 484, 613
HgaI	GACGC	4 cut(s)	27, 334, 560, 583
HhaI	GCGC	6 cut(s)	166, 319, 422, 433, 439, 631
Hin1I	GRCGYC	3 cut(s)	38, 552, 708
Hin6I	GCGC	6 cut(s)	164, 317, 420, 431, 437, 629
HinP1I	GCGC	6 cut(s)	164, 317, 420, 431, 437, 629
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	7 cut(s)	17, 102, 252, 362, 530, 656, 671
HpaII	CCGG	9 cut(s)	47, 52, 70, 138, 214, 312, 320, 484, 613
HphI	GGTGA	3 cut(s)	221, 292, 469
Hpy188III	TCNNGA	4 cut(s)	124, 214, 352, 653
Hpy99I	CGWCG	5 cut(s)	43, 493, 554, 710, 713
HpyAV	CCTTC	3 cut(s)	292, 404, 619
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	2 cut(s)	292, 708
HpyCH4V	TGCA	4 cut(s)	417, 595, 606, 702
HpySE526I	ACGT	2 cut(s)	292, 708
Hsp92I	GRCGYC	3 cut(s)	38, 552, 708
HspAI	GCGC	6 cut(s)	164, 317, 420, 431, 437, 629
Kpn2I	TCCGGA	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	330
KspI	CCGCGG	1 cut(s)	236
Kzo9I	GATC	4 cut(s)	120, 201, 330, 474
LmnI	GCTCC	6 cut(s)	78, 154, 162, 314, 396, 535
Lsp1109I	GCAGC	7 cut(s)	429, 438, 589, 621, 624, 643, 714
LweI	GCATC	1 cut(s)	411
MaeII	ACGT	2 cut(s)	292, 708
MaeIII	GTNAC	1 cut(s)	582
MalI	GATC	4 cut(s)	122, 203, 332, 476
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	4 cut(s)	120, 201, 330, 474
MboII	GAAGA	6 cut(s)	70, 472, 484, 631, 641, 680
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	6 cut(s)	159, 241, 376, 393, 511, 527
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	3 cut(s)	85, 207, 682
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	4 cut(s)	26, 96, 356, 539
MmeI	TCCRAC	5 cut(s)	21, 45, 124, 513, 658
MnlI	CCTC	6 cut(s)	86, 88, 188, 363, 404, 615
Mox20I	TGGCCA	1 cut(s)	380
MroI	TCCGGA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	4 cut(s)	235, 451, 580, 634
MspI	CCGG	9 cut(s)	47, 52, 70, 138, 214, 312, 320, 484, 613
MspR9I	CCNGG	9 cut(s)	47, 53, 65, 70, 139, 278, 377, 485, 614
MvaI	CCWGG	3 cut(s)	65, 278, 377
MvnI	CGCG	8 cut(s)	116, 145, 235, 269, 422, 428, 437, 500
NciI	CCSGG	6 cut(s)	47, 53, 70, 139, 485, 614
NdeII	GATC	4 cut(s)	120, 201, 330, 474
NlaIV	GGNNCC	6 cut(s)	45, 62, 74, 218, 374, 447
NmeAIII	GCCGAG	2 cut(s)	40, 89
PcsI	WCGNNNNNNNCGW	5 cut(s)	18, 348, 357, 485, 614
PfeI	GAWTC	3 cut(s)	252, 656, 671
PflFI	GACNNNGTC	1 cut(s)	53
PleI	GAGTC	4 cut(s)	25, 96, 356, 538
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	4 cut(s)	25, 96, 356, 538
Ppu21I	YACGTR	1 cut(s)	293
Psp124BI	GAGCTC	2 cut(s)	159, 393
Psp6I	CCWGG	3 cut(s)	63, 276, 375
PspCI	CACGTG	1 cut(s)	293
PspGI	CCWGG	3 cut(s)	63, 276, 375
PspN4I	GGNNCC	6 cut(s)	45, 62, 74, 218, 374, 447
PspOMI	GGGCCC	1 cut(s)	372
PspPI	GGNCC	9 cut(s)	43, 49, 67, 97, 372, 373, 481, 610, 663
PstNI	CAGNNNCTG	1 cut(s)	637
PsuI	RGATCY	1 cut(s)	474
PsyI	GACNNNGTC	1 cut(s)	53
PvuII	CAGCTG	2 cut(s)	580, 634
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
Rsr2I	CGGWCCG	3 cut(s)	49, 481, 610
RsrII	CGGWCCG	3 cut(s)	49, 481, 610
SacI	GAGCTC	2 cut(s)	159, 393
SacII	CCGCGG	1 cut(s)	236
Sau3AI	GATC	4 cut(s)	120, 201, 330, 474
Sau96I	GGNCC	9 cut(s)	43, 49, 67, 97, 372, 373, 481, 610, 663
SchI	GAGTC	4 cut(s)	26, 96, 356, 539
ScrFI	CCNGG	9 cut(s)	47, 53, 65, 70, 139, 278, 377, 485, 614
SduI	GDGCHC	6 cut(s)	159, 241, 376, 393, 511, 527
SetI	ASST	9 cut(s)	99, 132, 159, 295, 393, 582, 636, 648, 711
SfaNI	GCATC	1 cut(s)	411
SfiI	GGCCNNNNNGGCC	1 cut(s)	308
Sfr303I	CCGCGG	1 cut(s)	236
SgrBI	CCGCGG	1 cut(s)	236
SinI	GGWCC	5 cut(s)	43, 49, 97, 481, 610
Sse9I	AATT	3 cut(s)	85, 207, 682
SstI	GAGCTC	2 cut(s)	159, 393
StyD4I	CCNGG	9 cut(s)	45, 51, 63, 68, 137, 276, 375, 483, 612
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	2 cut(s)	295, 711
TaqI	TCGA	4 cut(s)	89, 123, 204, 351
TasI	AATT	3 cut(s)	85, 207, 682
TauI	GCSGC	7 cut(s)	116, 311, 402, 431, 451, 503, 563
TfiI	GAWTC	3 cut(s)	252, 656, 671
TseI	GCWGC	7 cut(s)	417, 451, 577, 631, 634, 637, 702
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	2 cut(s)	506, 623
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	5 cut(s)	43, 49, 97, 481, 610
XapI	RAATTY	2 cut(s)	207, 682
ZraI	GACGTC	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.