RLG00000014730

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
56893200 .. 56894447
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014730

Sequence Viewer

Length: 1101 bp
ATGCCGGGCAGTTTAGAGCCGTTGGATTTAGTCGGGGTGCAGATTCCCTACCATTTCAGGTGTCCGATCTCCCTAGAGCTCATGCGCGACCCGTGGTGCGTCGCCAACCGCTCTTTCGGCGTCGAGCGAATTCCCACGCCGAAACAACCCGCCGACCCGACCGTGGTCCGGTCGCTTCTCTCACAGGCCGGGTCCCACTCCAACCCGTACCCGACCCGGCTCGCCGCGCTGCGCCGCCTCAGAGGCCTGGCTCGCGATTTGGATAAGAACCGCTCCATCATCTCCTCCCACATTAACGCGCGGGAAATCCTTGTCAATATCGTCTTCGCCGACTCCGGCCCCGATTCAGAGTTGAACCGCGAGGCGCTCGCGCTTCTCGTAATGTTCCCTCTCGCCGAGTCCGACTGCGTGGCGGTGGCGTCGGATCCGGACCGGGTCGGGTTCCTGGTGCGGCTTCTCTTCCACAATTCGATGGAGGTCCGACTCAACTCGGCCGCGTTGATCGAGAACCTCCTGGCCGGGTCGCGGACGGCGGAGCTCCGAGCGCAGATAAGCAATGTGGATGAAATCCACCGAGGCGTGATCGAAATTCTCCGGAACCCAATCGCTCACCCGCGGGCTCTGAAAATCGGAATCAAAGCCTTGTTCGCGTTGTGCCTGGTGAAGCAGACACGTGAGAAGGCCGTGTCCGCCGGAGCGCCGGAGACGCTGATCAACACTCTCGCCGACTTCGAGAAATGCGACTCGGAGAGAGCCCTGGCCACCATAGAGCTCCTCTGCCGCATCCCCGAAGGGTGCAGCGCGTTCGCGGCGCACGCGCTCACCGTGCCGCTGCTGGTGAAGACGATACTGAAGATCTCGGACCGGGCGACGGAGTACGCGGCGGGGGCACTTTTGTCATTGTGCTCGGAGTCGGAGCAGAGCCAAAACGACGCCGTGGCGGCGGGGATTATGACGCAGCTGTTACTGCTGGTGCAGAGTGACTGCACGGACCGAGCGAAGAGGAAGGCGCAGCTGCTGCTGAAGCTTCTTCGGGATTCGTGGCCCGAAGATTCTGTCGGAAATTCTGATGACTTTGTTTGCAGCGACGTCGTATGGTAG

Protein Analysis

367

Amino Acids

40.02

Weight (kDa)

6.03

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 56 - 359 5.6e-80 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1092
AccBSI CCGCTC 2 cut(s) 111, 273
AccIII TCCGGA 2 cut(s) 427, 594
AclWI GGATC 2 cut(s) 419, 432
AcoI YGGCCR 3 cut(s) 492, 516, 759
AcsI RAATTY 3 cut(s) 129, 588, 1063
AcuI CTGAAG 2 cut(s) 872, 1043
AcvI CACGTG 1 cut(s) 674
AcyI GRCGYC 4 cut(s) 120, 419, 933, 1089
AfaI GTAC 2 cut(s) 209, 878
AfiI CCNNNNNNNGG 4 cut(s) 163, 168, 525, 871
AflIII ACRYGT 1 cut(s) 671
AgsI TTSAA 1 cut(s) 355
AjnI CCWGG 5 cut(s) 246, 444, 513, 657, 756
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 6 cut(s) 79, 538, 772, 961, 1015, 1027
AluI AGCT 6 cut(s) 79, 538, 772, 961, 1015, 1027
Alw21I GWGCWC 4 cut(s) 81, 540, 774, 908
Alw26I GTCTC 1 cut(s) 698
AlwI GGATC 2 cut(s) 419, 432
AlwNI CAGNNNCTG 1 cut(s) 1018
Aor13HI TCCGGA 2 cut(s) 427, 594
AoxI GGCC 8 cut(s) 186, 244, 337, 492, 516, 681, 759, 1043
ApeKI GCWGC 8 cut(s) 229, 798, 832, 958, 1012, 1015, 1018, 1083
ApoI RAATTY 3 cut(s) 129, 588, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 1041, 1073
AspS9I GGNCC 8 cut(s) 166, 192, 338, 430, 478, 862, 991, 1044
AsuC2I CCSGG 6 cut(s) 6, 190, 217, 434, 520, 866
AsuHPI GGTGA 4 cut(s) 602, 673, 814, 850
AvaII GGWCC 6 cut(s) 166, 192, 430, 478, 862, 991
BaeGI GKGCMC 1 cut(s) 892
BalI TGGCCA 1 cut(s) 761
BamHI GGATCC 1 cut(s) 424
BanII GRGCYC 5 cut(s) 81, 540, 622, 757, 774
BbrPI CACGTG 1 cut(s) 674
BbsI GAAGAC 2 cut(s) 316, 848
Bbv12I GWGCWC 4 cut(s) 81, 540, 774, 908
BbvI GCAGC 8 cut(s) 216, 810, 819, 970, 1002, 1005, 1024, 1095
BccI CCATC 2 cut(s) 284, 466
BceAI ACGGC 4 cut(s) 4, 546, 668, 920
BcgI CGANNNNNNTGC 3 cut(s) 787, 821, 1072
BciT130I CCWGG 5 cut(s) 248, 446, 515, 659, 758
BclI TGATCA 1 cut(s) 711
BcnI CCSGG 6 cut(s) 6, 190, 217, 434, 520, 866
BcoDI GTCTC 1 cut(s) 698
BfaI CTAG 1 cut(s) 74
BfoI RGCGCY 2 cut(s) 368, 701
BglI GCCNNNNNGGC 2 cut(s) 243, 941
BglII AGATCT 1 cut(s) 855
Bme18I GGWCC 6 cut(s) 166, 192, 430, 478, 862, 991
BmgT120I GGNCC 8 cut(s) 166, 192, 338, 430, 478, 862, 991, 1044
BmiI GGNNCC 6 cut(s) 193, 194, 340, 426, 443, 599
BmsI GCATC 1 cut(s) 792
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 2 cut(s) 316, 848
BpuMI CCSGG 6 cut(s) 6, 190, 217, 434, 520, 866
BsaAI YACGTR 1 cut(s) 674
BsaHI GRCGYC 4 cut(s) 120, 419, 933, 1089
BsaJI CCNNGG 6 cut(s) 92, 162, 574, 614, 756, 936
BsaWI WCCGGW 3 cut(s) 168, 427, 594
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 168, 525, 871
Bse3DI GCAATG 1 cut(s) 562
BseAI TCCGGA 2 cut(s) 427, 594
BseBI CCWGG 5 cut(s) 248, 446, 515, 659, 758
BseDI CCNNGG 6 cut(s) 92, 162, 574, 614, 756, 936
BseGI GGATG 2 cut(s) 568, 783
BseLI CCNNNNNNNGG 4 cut(s) 163, 168, 525, 871
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 1 cut(s) 253
BseRI GAGGAG 2 cut(s) 274, 764
BseSI GKGCMC 1 cut(s) 892
BseX3I CGGCCG 1 cut(s) 492
BseXI GCAGC 8 cut(s) 216, 810, 819, 970, 1002, 1005, 1024, 1095
BsgI GTGCAG 4 cut(s) 59, 817, 970, 995
Bsh1285I CGRYCG 3 cut(s) 162, 173, 495
BshFI GGCC 8 cut(s) 188, 246, 339, 494, 518, 683, 761, 1045
BsiEI CGRYCG 3 cut(s) 162, 173, 495
BsiHKAI GWGCWC 4 cut(s) 81, 540, 774, 908
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 4 cut(s) 163, 168, 525, 871
BsmAI GTCTC 1 cut(s) 698
BsmBI CGTCTC 1 cut(s) 698
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 8 cut(s) 188, 246, 339, 494, 518, 683, 761, 1045
Bsp1286I GDGCHC 7 cut(s) 81, 540, 622, 757, 774, 892, 908
Bsp13I TCCGGA 2 cut(s) 427, 594
Bsp143I GATC 6 cut(s) 66, 424, 501, 582, 711, 855
Bsp68I TCGCGA 1 cut(s) 255
BspANI GGCC 8 cut(s) 188, 246, 339, 494, 518, 683, 761, 1045
BspCNI CTCAG 1 cut(s) 252
BspEI TCCGGA 2 cut(s) 427, 594
BspLI GGNNCC 6 cut(s) 193, 194, 340, 426, 443, 599
BspPI GGATC 2 cut(s) 419, 432
BsrBI CCGCTC 2 cut(s) 111, 273
BsrDI GCAATG 1 cut(s) 562
BssECI CCNNGG 6 cut(s) 92, 162, 574, 614, 756, 936
BssMI GATC 6 cut(s) 66, 424, 501, 582, 711, 855
BssNI GRCGYC 4 cut(s) 120, 419, 933, 1089
Bst2UI CCWGG 5 cut(s) 248, 446, 515, 659, 758
Bst4CI ACNGT 2 cut(s) 163, 826
Bst6I CTCTTC 2 cut(s) 464, 995
BstACI GRCGYC 4 cut(s) 120, 419, 933, 1089
BstAPI GCANNNNNTGC 1 cut(s) 1018
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 5 cut(s) 222, 253, 369, 618, 816
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 4 cut(s) 92, 162, 614, 936
BstF5I GGATG 2 cut(s) 568, 783
BstH2I RGCGCY 2 cut(s) 368, 701
BstKTI GATC 6 cut(s) 69, 427, 504, 585, 714, 858
BstMAI GTCTC 1 cut(s) 698
BstMBI GATC 6 cut(s) 66, 424, 501, 582, 711, 855
BstMCI CGRYCG 3 cut(s) 162, 173, 495
BstNI CCWGG 5 cut(s) 248, 446, 515, 659, 758
BstPAI GACNNNNGTC 1 cut(s) 164
BstSLI GKGCMC 1 cut(s) 892
BstV1I GCAGC 8 cut(s) 216, 810, 819, 970, 1002, 1005, 1024, 1095
BstV2I GAAGAC 2 cut(s) 316, 848
BstX2I RGATCY 2 cut(s) 424, 855
BstYI RGATCY 2 cut(s) 424, 855
BstZI CGGCCG 1 cut(s) 492
BsuRI GGCC 8 cut(s) 188, 246, 339, 494, 518, 683, 761, 1045
BtgI CCRYGG 4 cut(s) 92, 162, 614, 936
BtsCI GGATG 2 cut(s) 568, 783
BtuMI TCGCGA 1 cut(s) 255
Cac8I GCNNGC 5 cut(s) 222, 253, 369, 618, 816
CaiI CAGNNNCTG 1 cut(s) 1018
Cfr13I GGNCC 8 cut(s) 166, 192, 338, 430, 478, 862, 991, 1044
Cfr42I CCGCGG 1 cut(s) 617
CpoI CGGWCCG 3 cut(s) 430, 862, 991
CseI GACGC 6 cut(s) 88, 109, 408, 715, 941, 964
Csp6I GTAC 2 cut(s) 208, 877
CspI CGGWCCG 3 cut(s) 430, 862, 991
CviAII CATG 1 cut(s) 82
CviQI GTAC 2 cut(s) 208, 877
DdeI CTNAG 1 cut(s) 239
DpnI GATC 6 cut(s) 68, 426, 503, 584, 713, 857
DpnII GATC 6 cut(s) 66, 424, 501, 582, 711, 855
EaeI YGGCCR 3 cut(s) 492, 516, 759
EagI CGGCCG 1 cut(s) 492
Eam1104I CTCTTC 2 cut(s) 464, 995
EarI CTCTTC 2 cut(s) 464, 995
EciI GGCGGA 2 cut(s) 548, 679
Ecl136II GAGCTC 3 cut(s) 79, 538, 772
EclXI CGGCCG 1 cut(s) 492
Eco147I AGGCCT 1 cut(s) 246
Eco24I GRGCYC 5 cut(s) 81, 540, 622, 757, 774
Eco47I GGWCC 6 cut(s) 166, 192, 430, 478, 862, 991
Eco52I CGGCCG 1 cut(s) 492
Eco53kI GAGCTC 3 cut(s) 79, 538, 772
Eco57I CTGAAG 2 cut(s) 872, 1043
Eco72I CACGTG 1 cut(s) 674
EcoICRI GAGCTC 3 cut(s) 79, 538, 772
EcoO109I RGGNCCY 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 129
EcoRII CCWGG 5 cut(s) 246, 444, 513, 657, 756
EcoT38I GRGCYC 5 cut(s) 81, 540, 622, 757, 774
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 1 cut(s) 85
FaiI YATR 4 cut(s) 83, 767, 953, 1096
FaqI GGGAC 1 cut(s) 178
FatI CATG 1 cut(s) 81
FauI CCCGC 6 cut(s) 157, 294, 609, 621, 877, 937
FbaI TGATCA 1 cut(s) 711
FokI GGATG 2 cut(s) 575, 770
FriOI GRGCYC 5 cut(s) 81, 540, 622, 757, 774
FspBI CTAG 1 cut(s) 74
HaeII RGCGCY 2 cut(s) 368, 701
HaeIII GGCC 8 cut(s) 188, 246, 339, 494, 518, 683, 761, 1045
HgaI GACGC 6 cut(s) 88, 109, 408, 715, 941, 964
Hin1I GRCGYC 4 cut(s) 120, 419, 933, 1089
Hin1II CATG 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 1025
HphI GGTGA 4 cut(s) 602, 673, 814, 850
Hpy188III TCNNGA 6 cut(s) 254, 428, 505, 595, 733, 1034
Hpy99I CGWCG 7 cut(s) 104, 125, 424, 874, 935, 1091, 1094
HpyAV CCTTC 3 cut(s) 673, 785, 1000
HpyCH4III ACNGT 2 cut(s) 163, 826
HpyCH4IV ACGT 2 cut(s) 673, 1089
HpyCH4V TGCA 5 cut(s) 40, 798, 976, 987, 1083
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 2 cut(s) 673, 1089
Hsp92I GRCGYC 4 cut(s) 120, 419, 933, 1089
Hsp92II CATG 1 cut(s) 85
KflI GGGWCCC 1 cut(s) 192
Kpn2I TCCGGA 2 cut(s) 427, 594
Ksp22I TGATCA 1 cut(s) 711
KspI CCGCGG 1 cut(s) 617
Kzo9I GATC 6 cut(s) 66, 424, 501, 582, 711, 855
LmnI GCTCC 6 cut(s) 278, 535, 543, 695, 777, 916
Lsp1109I GCAGC 8 cut(s) 216, 810, 819, 970, 1002, 1005, 1024, 1095
LweI GCATC 1 cut(s) 792
MaeI CTAG 1 cut(s) 74
MaeII ACGT 2 cut(s) 673, 1089
MaeIII GTNAC 2 cut(s) 963, 980
MalI GATC 6 cut(s) 68, 426, 503, 584, 713, 857
MbiI CCGCTC 2 cut(s) 111, 273
MboI GATC 6 cut(s) 66, 424, 501, 582, 711, 855
MboII GAAGA 7 cut(s) 316, 451, 853, 865, 1012, 1022, 1061
MflI RGATCY 2 cut(s) 424, 855
MhlI GDGCHC 7 cut(s) 81, 540, 622, 757, 774, 892, 908
MlsI TGGCCA 1 cut(s) 761
MluCI AATT 4 cut(s) 129, 466, 588, 1063
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 5 cut(s) 326, 407, 477, 737, 920
MmeI TCCRAC 6 cut(s) 225, 402, 426, 505, 894, 1039
Mox20I TGGCCA 1 cut(s) 761
MroI TCCGGA 2 cut(s) 427, 594
MscI TGGCCA 1 cut(s) 761
MseI TTAA 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 4 cut(s) 616, 832, 961, 1015
MteI GCGCNGCGC 1 cut(s) 230
MvaI CCWGG 5 cut(s) 248, 446, 515, 659, 758
NciI CCSGG 6 cut(s) 6, 190, 217, 434, 520, 866
NdeII GATC 6 cut(s) 66, 424, 501, 582, 711, 855
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 6 cut(s) 193, 194, 340, 426, 443, 599
NmeAIII GCCGAG 2 cut(s) 421, 470
NmuCI GTSAC 1 cut(s) 980
NruI TCGCGA 1 cut(s) 255
PceI AGGCCT 1 cut(s) 246
PcsI WCGNNNNNNNCGW 8 cut(s) 327, 375, 399, 729, 738, 822, 866, 995
PfeI GAWTC 5 cut(s) 43, 344, 633, 1037, 1052
PflFI GACNNNGTC 1 cut(s) 434
PleI GAGTC 5 cut(s) 326, 406, 477, 737, 919
PmaCI CACGTG 1 cut(s) 674
PmlI CACGTG 1 cut(s) 674
PpsI GAGTC 5 cut(s) 326, 406, 477, 737, 919
Ppu21I YACGTR 1 cut(s) 674
PpuMI RGGWCCY 1 cut(s) 192
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 3 cut(s) 81, 540, 774
Psp5II RGGWCCY 1 cut(s) 192
Psp6I CCWGG 5 cut(s) 246, 444, 513, 657, 756
PspCI CACGTG 1 cut(s) 674
PspGI CCWGG 5 cut(s) 246, 444, 513, 657, 756
PspN4I GGNNCC 6 cut(s) 193, 194, 340, 426, 443, 599
PspPI GGNCC 8 cut(s) 166, 192, 338, 430, 478, 862, 991, 1044
PspPPI RGGWCCY 1 cut(s) 192
PstNI CAGNNNCTG 1 cut(s) 1018
PsuI RGATCY 2 cut(s) 424, 855
PsyI GACNNNGTC 1 cut(s) 434
PvuII CAGCTG 2 cut(s) 961, 1015
RruI TCGCGA 1 cut(s) 255
RsaI GTAC 2 cut(s) 209, 878
RsaNI GTAC 2 cut(s) 208, 877
Rsr2I CGGWCCG 3 cut(s) 430, 862, 991
RsrII CGGWCCG 3 cut(s) 430, 862, 991
SacI GAGCTC 3 cut(s) 81, 540, 774
SacII CCGCGG 1 cut(s) 617
SaqAI TTAA 1 cut(s) 294
Sau3AI GATC 6 cut(s) 66, 424, 501, 582, 711, 855
Sau96I GGNCC 8 cut(s) 166, 192, 338, 430, 478, 862, 991, 1044
SchI GAGTC 5 cut(s) 326, 407, 477, 737, 920
SduI GDGCHC 7 cut(s) 81, 540, 622, 757, 774, 892, 908
SfaNI GCATC 1 cut(s) 792
Sfr303I CCGCGG 1 cut(s) 617
SgrBI CCGCGG 1 cut(s) 617
SinI GGWCC 6 cut(s) 166, 192, 430, 478, 862, 991
Sse9I AATT 4 cut(s) 129, 466, 588, 1063
SseBI AGGCCT 1 cut(s) 246
SspMI CTAG 1 cut(s) 74
SstI GAGCTC 3 cut(s) 81, 540, 774
StuI AGGCCT 1 cut(s) 246
TaaI ACNGT 2 cut(s) 163, 826
TaiI ACGT 2 cut(s) 676, 1092
TaqI TCGA 5 cut(s) 123, 470, 504, 585, 732
TaqII GACCGA 1 cut(s) 1008
TasI AATT 4 cut(s) 129, 466, 588, 1063
TauI GCSGC 9 cut(s) 227, 237, 454, 497, 783, 812, 832, 884, 944
TfiI GAWTC 5 cut(s) 43, 344, 633, 1037, 1052
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseFI GTSAC 1 cut(s) 980
TseI GCWGC 8 cut(s) 229, 798, 832, 958, 1012, 1015, 1018, 1083
Tsp45I GTSAC 1 cut(s) 980
TspDTI ATGAA 1 cut(s) 579
TspGWI ACGGA 2 cut(s) 887, 1004
Tth111I GACNNNGTC 1 cut(s) 434
VpaK11BI GGWCC 6 cut(s) 166, 192, 430, 478, 862, 991
XapI RAATTY 3 cut(s) 129, 588, 1063
XspI CTAG 1 cut(s) 74
ZraI GACGTC 1 cut(s) 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.