Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011283

Physical Location & Seq

Genomic Coordinates Reverse (-)

7164886 .. 7170061

Gene Structure 5176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATTGGCTTCTGTCTGGGATGTACTACTCAGCTACTCATGACAAAACTAGAGGAGGAGCGGACCAGCACCACCCCGAACGATGGCCTCCAACTCCAAATAGCCACCGTGGACCCGGCGTCGAGTTCTTGGTCTCCCCCGGCAACACCACCTGCCCGGTCACCCGAACCCAACTCGCCGACTTCACCCTCATCCCCAACCACACTCTCCGTAGGCTCATTCAGTCCGAGGCTGCCTGTGGTCACAAGCTTGTGTCGATGTTGGCGGGAATGAGATCGATTGTACTCGGATCCGATCGAAATGATCCGACCCCTGTTTGGTCTAATGGATCGATGCGGGAGGGGTTGATTGGGATGGGTGATGTTTGTCAATGGCGTGACGAGAATGGTGGCGGTCCCCGCGGAAGTGATTTGTGCGGTGCGGCGGGTAGTCTTCGGGAGATGGGTTTCGGCCGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

153

Amino Acids

16.56

Weight (kDa)

7.0

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49780
fragaria_vesca	FvH4_2g05820
malus_domestica	MD05G1083200.v1.1
prunus_persica	Prupe.8G127600_v2.0.a1
pyrus_communis	pycom05g08000
rosa_chinensis	RchiOBHm_Chr6g0257831 RchiOBHm_Chr7g0191621
rosa_laevigata	RLG00000005798 RLG00000014730 RLG00000015093
rosa_multiflora	Rmu_co8263605.1_g000001 Rmu_sc0000077.1_g000008
rosa_roxburghii	Rroxscaffold_2G00110230 Rroxscaffold_7G00165410
rosa_rugosa	Rorug05G0567500
rosa_samantha	Rh6AG084400 Rh6BG079100 Rh6CG073800 Rh6DG070700
rosa_wichuraiana	Rw6G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	1 cut(s)	402
AciI	CCGC	9 cut(s)	62, 266, 337, 393, 400, 402, 417, 422, 425
AclWI	GGATC	4 cut(s)	285, 298, 299, 337
AcoI	YGGCCR	1 cut(s)	451
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	26, 285
AfiI	CCNNNNNNNGG	2 cut(s)	84, 318
AhdI	GACNNNNNGTC	1 cut(s)	119
AluBI	AGCT	2 cut(s)	35, 250
AluI	AGCT	2 cut(s)	35, 250
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	4 cut(s)	285, 298, 299, 337
AoxI	GGCC	2 cut(s)	86, 451
ApeKI	GCWGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	64, 113, 395
AsuC2I	CCSGG	4 cut(s)	117, 141, 158, 455
AsuHPI	GGTGA	3 cut(s)	154, 178, 371
AvaII	GGWCC	3 cut(s)	64, 113, 395
BamHI	GGATCC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	3 cut(s)	78, 349, 436
BcnI	CCSGG	4 cut(s)	117, 141, 158, 455
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	2 cut(s)	234, 423
BlsI	GCNGC	2 cut(s)	235, 424
Bme1390I	CCNGG	4 cut(s)	117, 141, 158, 455
Bme18I	GGWCC	3 cut(s)	64, 113, 395
BmeRI	GACNNNNNGTC	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	64, 113, 395
BmiI	GGNNCC	3 cut(s)	115, 292, 397
BmrFI	CCNGG	4 cut(s)	117, 141, 158, 455
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	425
BpuMI	CCSGG	4 cut(s)	117, 141, 158, 455
Bsa29I	ATCGAT	2 cut(s)	278, 332
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	4 cut(s)	109, 139, 228, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 318
BseCI	ATCGAT	2 cut(s)	278, 332
BseDI	CCNNGG	4 cut(s)	109, 139, 228, 400
BseGI	GGATG	3 cut(s)	27, 192, 360
BseLI	CCNNNNNNNGG	2 cut(s)	84, 318
BseMII	CTCAG	1 cut(s)	45
BseRI	GAGGAG	2 cut(s)	69, 72
BseX3I	CGGCCG	1 cut(s)	451
BseXI	GCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	2 cut(s)	298, 454
BshFI	GGCC	2 cut(s)	88, 453
BshVI	ATCGAT	2 cut(s)	278, 332
BsiEI	CGRYCG	2 cut(s)	298, 454
BsiSI	CCGG	4 cut(s)	117, 141, 158, 454
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	2 cut(s)	84, 318
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	2 cut(s)	88, 453
Bso31I	GGTCTC	1 cut(s)	139
Bsp143I	GATC	5 cut(s)	275, 290, 295, 304, 329
BspACI	CCGC	9 cut(s)	62, 266, 337, 393, 400, 402, 417, 422, 425
BspANI	GGCC	2 cut(s)	88, 453
BspCNI	CTCAG	1 cut(s)	44
BspDI	ATCGAT	2 cut(s)	278, 332
BspFNI	CGCG	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	3 cut(s)	115, 292, 397
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	4 cut(s)	285, 298, 299, 337
BspTNI	GGTCTC	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	109, 139, 228, 400
BssMI	GATC	5 cut(s)	275, 290, 295, 304, 329
BssNI	GRCGYC	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	31
BstDSI	CCRYGG	2 cut(s)	109, 400
BstEII	GGTNACC	1 cut(s)	160
BstF5I	GGATG	3 cut(s)	27, 192, 360
BstFNI	CGCG	1 cut(s)	402
BstKTI	GATC	5 cut(s)	278, 293, 298, 307, 332
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	5 cut(s)	275, 290, 295, 304, 329
BstMCI	CGRYCG	2 cut(s)	298, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstPI	GGTNACC	1 cut(s)	160
BstSCI	CCNGG	4 cut(s)	115, 139, 156, 453
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BstZI	CGGCCG	1 cut(s)	451
Bsu15I	ATCGAT	2 cut(s)	278, 332
BsuRI	GGCC	2 cut(s)	88, 453
BsuTUI	ATCGAT	2 cut(s)	278, 332
BtgI	CCRYGG	2 cut(s)	109, 400
BtsCI	GGATG	3 cut(s)	27, 192, 360
BveI	ACCTGC	1 cut(s)	161
CciI	TCATGA	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	64, 113, 395
Cfr42I	CCGCGG	1 cut(s)	403
ClaI	ATCGAT	2 cut(s)	278, 332
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	25, 284
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	9 cut(s)	10, 35, 88, 105, 217, 233, 250, 453, 458
CviKI_1	RGCY	9 cut(s)	10, 35, 88, 105, 217, 233, 250, 453, 458
CviQI	GTAC	2 cut(s)	25, 284
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	5 cut(s)	277, 292, 297, 306, 331
DpnII	GATC	5 cut(s)	275, 290, 295, 304, 329
DriI	GACNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	451
EagI	CGGCCG	1 cut(s)	451
Eam1105I	GACNNNNNGTC	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	451
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	3 cut(s)	64, 113, 395
Eco52I	CGGCCG	1 cut(s)	451
Eco91I	GGTNACC	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	160
FaeI	CATG	1 cut(s)	44
FaiI	YATR	1 cut(s)	42
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	1 cut(s)	40
FauI	CCCGC	4 cut(s)	259, 330, 407, 418
Fnu4HI	GCNGC	2 cut(s)	234, 423
FokI	GGATG	3 cut(s)	34, 179, 367
Fsp4HI	GCNGC	2 cut(s)	234, 423
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	2 cut(s)	234, 423
HaeIII	GGCC	2 cut(s)	88, 453
HapII	CCGG	4 cut(s)	117, 141, 158, 454
HgaI	GACGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	248
HpaII	CCGG	4 cut(s)	117, 141, 158, 454
HphI	GGTGA	3 cut(s)	154, 178, 371
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	4 cut(s)	229, 290, 295, 309
Hpy188III	TCNNGA	2 cut(s)	41, 437
Hpy8I	GTNNAC	1 cut(s)	113
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	1 cut(s)	31
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	44
KspI	CCGCGG	1 cut(s)	403
Kzo9I	GATC	5 cut(s)	275, 290, 295, 304, 329
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	8 cut(s)	3, 80, 130, 154, 166, 171, 250, 327
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	3 cut(s)	160, 242, 377
MalI	GATC	5 cut(s)	277, 292, 297, 306, 331
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	5 cut(s)	275, 290, 295, 304, 329
MboII	GAAGA	1 cut(s)	425
MflI	RGATCY	1 cut(s)	290
MmeI	TCCRAC	2 cut(s)	116, 332
MnlI	CCTC	6 cut(s)	47, 50, 99, 200, 223, 334
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	4 cut(s)	117, 141, 158, 454
MspR9I	CCNGG	4 cut(s)	117, 141, 158, 455
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	399
NciI	CCSGG	4 cut(s)	117, 141, 158, 455
NdeII	GATC	5 cut(s)	275, 290, 295, 304, 329
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	3 cut(s)	115, 292, 397
NmuCI	GTSAC	3 cut(s)	160, 242, 377
PagI	TCATGA	1 cut(s)	40
PaqCI	CACCTGC	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	235, 424
Ple19I	CGATCG	1 cut(s)	298
PspEI	GGTNACC	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	115, 292, 397
PspPI	GGNCC	3 cut(s)	64, 113, 395
PsuI	RGATCY	1 cut(s)	290
PvuI	CGATCG	1 cut(s)	298
RsaI	GTAC	2 cut(s)	26, 285
RsaNI	GTAC	2 cut(s)	25, 284
SacII	CCGCGG	1 cut(s)	403
SatI	GCNGC	2 cut(s)	234, 423
Sau3AI	GATC	5 cut(s)	275, 290, 295, 304, 329
Sau96I	GGNCC	3 cut(s)	64, 113, 395
ScrFI	CCNGG	4 cut(s)	117, 141, 158, 455
SetI	ASST	3 cut(s)	37, 155, 252
SfaNI	GCATC	1 cut(s)	324
Sfr303I	CCGCGG	1 cut(s)	403
SgrBI	CCGCGG	1 cut(s)	403
SinI	GGWCC	3 cut(s)	64, 113, 395
SsiI	CCGC	9 cut(s)	62, 266, 337, 393, 400, 402, 417, 422, 425
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	115, 139, 156, 453
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	5 cut(s)	123, 257, 278, 298, 332
TatI	WGTACW	2 cut(s)	24, 283
TauI	GCSGC	1 cut(s)	425
TseFI	GTSAC	3 cut(s)	160, 242, 377
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	3 cut(s)	160, 242, 377
TspGWI	ACGGA	1 cut(s)	200
VpaK11BI	GGWCC	3 cut(s)	64, 113, 395
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.