Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011283

Physical Location & Seq

Genomic Coordinates Forward (+)

61578508 .. 61579430

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015093

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTGTCGTCTGCGCCAAGATTGCCCTCGAGCTCCCCTCCCAACACTGCGTCTCTGTTCGACGACGCCGAAGCTCTGTTAGCGTTTGCTTTCCTCTGGGTCAAGATCGCCAACTCCGCCGATCCTCCACCAAGCCGTGGTCTCTGTGGTGATGCCATCAACGTGGCCGGCAACTCCTTCGACGTCATTGTCTGTGCCAAGATCACCCTCGAGCTCGCCTCCCAACTCCGGGTCTCTCTTGGACAGCGCCGGAACTCTGTTAGTGTTTGCTCTCCTTGGGGTCAAGACCGGCCAGCTCCGCCGATCTTCCACCAACCCGTGGTCTCTGCAGTGACGCCATTAATTCGGCCTCGGCGTCAAGACCCGACCCAGCTCTTTCTCCATCAATTGGAACTCAGATCTCGATTTGTTGATAGGGTGCAAAGAATCACAATTGCAAACTCCGGTCCCGGGTCTGCAACCGGCGAATTCGAAGGGAGAAGACTGGATGCCCAGAGCATTTTCTGGTGCCCAAATCAAATTTTCCTTCTCAATTTTTTTTTTGGGTCAAAATATTGCAGGTTTGATAAATATCCATATTTGTTATACAAGACAAAAAAGAAATCGAGTAGTAGTACAACACAAAAGAGTAATCTCCTTATTTATTGGGGGCTAATAAAACATTTTTCAATATTTATTGCCCCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.55

Weight (kDa)

9.78

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49780
fragaria_vesca	FvH4_2g05820
malus_domestica	MD05G1083200.v1.1
prunus_persica	Prupe.8G127600_v2.0.a1
pyrus_communis	pycom05g08000
rosa_chinensis	RchiOBHm_Chr6g0257831 RchiOBHm_Chr7g0191621
rosa_laevigata	RLG00000005798 RLG00000014730 RLG00000015093
rosa_multiflora	Rmu_co8263605.1_g000001 Rmu_sc0000077.1_g000008
rosa_roxburghii	Rroxscaffold_2G00110230 Rroxscaffold_7G00165410
rosa_rugosa	Rorug05G0567500
rosa_samantha	Rh6AG084400 Rh6BG079100 Rh6CG073800 Rh6DG070700
rosa_wichuraiana	Rw6G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AatII	GACGTC	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	549
AccB1I	GGYRCC	1 cut(s)	507
AccB7I	CCANNNNNTGG	3 cut(s)	137, 319, 388
AciI	CCGC	2 cut(s)	117, 299
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	2 cut(s)	165, 290
AcsI	RAATTY	2 cut(s)	467, 519
AcyI	GRCGYC	4 cut(s)	66, 183, 335, 355
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	6 cut(s)	137, 228, 229, 319, 388, 450
AgsI	TTSAA	1 cut(s)	669
AluBI	AGCT	5 cut(s)	33, 74, 214, 296, 373
AluI	AGCT	5 cut(s)	33, 74, 214, 296, 373
Alw21I	GWGCWC	2 cut(s)	35, 216
Alw26I	GTCTC	4 cut(s)	57, 146, 238, 328
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	3 cut(s)	28, 209, 449
AoxI	GGCC	3 cut(s)	165, 290, 347
ApoI	RAATTY	2 cut(s)	467, 519
AseI	ATTAAT	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	16, 249
AspS9I	GGNCC	1 cut(s)	446
AsuC2I	CCSGG	3 cut(s)	230, 450, 451
AsuHPI	GGTGA	2 cut(s)	161, 196
AsuII	TTCGAA	1 cut(s)	471
AvaI	CYCGRG	3 cut(s)	28, 209, 449
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	507
BanII	GRGCYC	2 cut(s)	35, 216
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	2 cut(s)	35, 216
BccI	CCATC	2 cut(s)	164, 390
BceAI	ACGGC	1 cut(s)	120
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BcnI	CCSGG	3 cut(s)	230, 450, 451
BcoDI	GTCTC	4 cut(s)	57, 146, 238, 328
BfmI	CTRYAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	250
BfuAI	ACCTGC	1 cut(s)	549
BglII	AGATCT	1 cut(s)	398
Bme1390I	CCNGG	3 cut(s)	230, 450, 451
Bme18I	GGWCC	1 cut(s)	446
BmeT110I	CYCGRG	3 cut(s)	28, 209, 449
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	448, 509
BmrFI	CCNGG	3 cut(s)	230, 450, 451
BmsI	GCATC	2 cut(s)	142, 478
BpiI	GAAGAC	1 cut(s)	487
BplI	GAGNNNNNCTC	4 cut(s)	22, 54, 203, 235
Bpu14I	TTCGAA	1 cut(s)	471
BpuMI	CCSGG	3 cut(s)	230, 450, 451
BsaBI	GATNNNNATC	1 cut(s)	570
BsaHI	GRCGYC	4 cut(s)	66, 183, 335, 355
BsaI	GGTCTC	3 cut(s)	146, 238, 328
BsaJI	CCNNGG	5 cut(s)	136, 275, 318, 350, 449
BsaWI	WCCGGW	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	6 cut(s)	137, 228, 229, 319, 388, 450
Bse118I	RCCGGY	3 cut(s)	167, 288, 461
Bse1I	ACTGG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	570
BseDI	CCNNGG	5 cut(s)	136, 275, 318, 350, 449
BseGI	GGATG	1 cut(s)	493
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	6 cut(s)	137, 228, 229, 319, 388, 450
BseMII	CTCAG	1 cut(s)	409
BseNI	ACTGG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	512
BseYI	CCCAGC	1 cut(s)	369
BshFI	GGCC	3 cut(s)	167, 292, 349
BshNI	GGYRCC	1 cut(s)	507
BsiHKAI	GWGCWC	2 cut(s)	35, 216
BsiHKCI	CYCGRG	3 cut(s)	28, 209, 449
BsiSI	CCGG	7 cut(s)	168, 229, 250, 289, 444, 450, 462
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	6 cut(s)	137, 228, 229, 319, 388, 450
BsmAI	GTCTC	4 cut(s)	57, 146, 238, 328
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	3 cut(s)	167, 292, 349
Bso31I	GGTCTC	3 cut(s)	146, 238, 328
BsoBI	CYCGRG	3 cut(s)	28, 209, 449
Bsp119I	TTCGAA	1 cut(s)	471
Bsp1286I	GDGCHC	3 cut(s)	35, 216, 512
Bsp143I	GATC	5 cut(s)	105, 121, 201, 303, 398
BspACI	CCGC	2 cut(s)	117, 299
BspANI	GGCC	3 cut(s)	167, 292, 349
BspCNI	CTCAG	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	448, 509
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	549
BspPI	GGATC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	507
BspTNI	GGTCTC	3 cut(s)	146, 238, 328
BsrFI	RCCGGY	3 cut(s)	167, 288, 461
BsrI	ACTGG	1 cut(s)	489
BssAI	RCCGGY	3 cut(s)	167, 288, 461
BssECI	CCNNGG	5 cut(s)	136, 275, 318, 350, 449
BssMI	GATC	5 cut(s)	105, 121, 201, 303, 398
BssNI	GRCGYC	4 cut(s)	66, 183, 335, 355
BssT1I	CCWWGG	1 cut(s)	275
BstACI	GRCGYC	4 cut(s)	66, 183, 335, 355
BstBI	TTCGAA	1 cut(s)	471
BstC8I	GCNNGC	3 cut(s)	169, 216, 294
BstDEI	CTNAG	1 cut(s)	395
BstDSI	CCRYGG	2 cut(s)	136, 318
BstF5I	GGATG	1 cut(s)	493
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	16, 249
BstKTI	GATC	5 cut(s)	108, 124, 204, 306, 401
BstMAI	GTCTC	4 cut(s)	57, 146, 238, 328
BstMBI	GATC	5 cut(s)	105, 121, 201, 303, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 80, 116, 298
BstSCI	CCNGG	3 cut(s)	228, 448, 449
BstSFI	CTRYAG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	512
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	3 cut(s)	167, 292, 349
BtgI	CCRYGG	2 cut(s)	136, 318
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	2 cut(s)	45, 336
BtsIMutI	CAGTG	2 cut(s)	45, 336
BveI	ACCTGC	1 cut(s)	549
Cac8I	GCNNGC	3 cut(s)	169, 216, 294
CfoI	GCGC	2 cut(s)	16, 249
Cfr10I	RCCGGY	3 cut(s)	167, 288, 461
Cfr13I	GGNCC	1 cut(s)	446
Cfr9I	CCCGGG	1 cut(s)	449
CseI	GACGC	4 cut(s)	39, 74, 343, 344
Csp6I	GTAC	1 cut(s)	615
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	5 cut(s)	107, 123, 203, 305, 400
DpnII	GATC	5 cut(s)	105, 121, 201, 303, 398
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	2 cut(s)	165, 290
EciI	GGCGGA	2 cut(s)	106, 288
Ecl136II	GAGCTC	2 cut(s)	33, 214
Eco130I	CCWWGG	1 cut(s)	275
Eco24I	GRGCYC	2 cut(s)	35, 216
Eco31I	GGTCTC	3 cut(s)	146, 238, 328
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	2 cut(s)	33, 214
Eco88I	CYCGRG	3 cut(s)	28, 209, 449
EcoICRI	GAGCTC	2 cut(s)	33, 214
EcoRI	GAATTC	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	275
EcoT38I	GRGCYC	2 cut(s)	35, 216
ErhI	CCWWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	57
FaiI	YATR	2 cut(s)	577, 586
FaqI	GGGAC	1 cut(s)	432
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	2 cut(s)	35, 216
GlaI	GCGC	2 cut(s)	15, 248
GsaI	CCCAGC	1 cut(s)	373
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	3 cut(s)	167, 292, 349
HapII	CCGG	7 cut(s)	168, 229, 250, 289, 444, 450, 462
HgaI	GACGC	4 cut(s)	39, 74, 343, 344
HhaI	GCGC	2 cut(s)	16, 249
Hin1I	GRCGYC	4 cut(s)	66, 183, 335, 355
Hin6I	GCGC	2 cut(s)	14, 247
HinP1I	GCGC	2 cut(s)	14, 247
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	7 cut(s)	168, 229, 250, 289, 444, 450, 462
HphI	GGTGA	2 cut(s)	161, 196
Hpy188I	TCNGA	1 cut(s)	398
Hpy188III	TCNNGA	4 cut(s)	103, 284, 359, 402
Hpy99I	CGWCG	3 cut(s)	65, 68, 185
HpyAV	CCTTC	3 cut(s)	187, 467, 536
HpyCH4IV	ACGT	2 cut(s)	162, 183
HpyCH4V	TGCA	5 cut(s)	329, 421, 437, 458, 558
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 80, 116, 298
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	2 cut(s)	162, 183
Hsp92I	GRCGYC	4 cut(s)	66, 183, 335, 355
HspAI	GCGC	2 cut(s)	14, 247
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	105, 121, 201, 303, 398
LmnI	GCTCC	2 cut(s)	38, 301
LweI	GCATC	2 cut(s)	142, 478
MaeII	ACGT	2 cut(s)	162, 183
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	5 cut(s)	107, 123, 203, 305, 400
MboI	GATC	5 cut(s)	105, 121, 201, 303, 398
MboII	GAAGA	2 cut(s)	298, 492
MfeI	CAATTG	2 cut(s)	386, 432
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	3 cut(s)	35, 216, 512
MluCI	AATT	6 cut(s)	342, 386, 432, 467, 519, 532
MnlI	CCTC	7 cut(s)	37, 48, 104, 135, 218, 229, 360
MroNI	GCCGGC	1 cut(s)	167
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	7 cut(s)	168, 229, 250, 289, 444, 450, 462
MspR9I	CCNGG	3 cut(s)	230, 450, 451
MunI	CAATTG	2 cut(s)	386, 432
MwoI	GCNNNNNNNGC	4 cut(s)	22, 80, 116, 298
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	3 cut(s)	230, 450, 451
NdeII	GATC	5 cut(s)	105, 121, 201, 303, 398
NgoMIV	GCCGGC	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	448, 509
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	471
PaeR7I	CTCGAG	2 cut(s)	28, 209
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 352
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	426
PflMI	CCANNNNNTGG	3 cut(s)	137, 319, 388
PshBI	ATTAAT	1 cut(s)	341
Psp124BI	GAGCTC	2 cut(s)	35, 216
PspFI	CCCAGC	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	448, 509
PspPI	GGNCC	1 cut(s)	446
PspXI	VCTCGAGB	2 cut(s)	28, 209
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
RseI	CAYNNNNRTG	1 cut(s)	161
SacI	GAGCTC	2 cut(s)	35, 216
SaqAI	TTAA	1 cut(s)	341
Sau3AI	GATC	5 cut(s)	105, 121, 201, 303, 398
Sau96I	GGNCC	1 cut(s)	446
ScrFI	CCNGG	3 cut(s)	230, 450, 451
SduI	GDGCHC	3 cut(s)	35, 216, 512
SetI	ASST	8 cut(s)	35, 76, 165, 186, 216, 298, 375, 563
SfaNI	GCATC	2 cut(s)	142, 478
SfcI	CTRYAG	1 cut(s)	327
Sfr274I	CTCGAG	2 cut(s)	28, 209
SfuI	TTCGAA	1 cut(s)	471
SinI	GGWCC	1 cut(s)	446
SlaI	CTCGAG	2 cut(s)	28, 209
SmaI	CCCGGG	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	28, 209
SmoI	CTYRAG	2 cut(s)	28, 209
Sse9I	AATT	6 cut(s)	342, 386, 432, 467, 519, 532
SsiI	CCGC	2 cut(s)	117, 299
SspI	AATATT	2 cut(s)	554, 672
SstI	GAGCTC	2 cut(s)	35, 216
StyD4I	CCNGG	3 cut(s)	228, 448, 449
StyI	CCWWGG	1 cut(s)	275
TaiI	ACGT	2 cut(s)	165, 186
TaqI	TCGA	7 cut(s)	29, 60, 180, 210, 403, 471, 605
TasI	AATT	6 cut(s)	342, 386, 432, 467, 519, 532
TatI	WGTACW	1 cut(s)	614
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	2 cut(s)	52, 336
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspMI	CCCGGG	1 cut(s)	449
TspRI	CASTG	2 cut(s)	52, 336
Van91I	CCANNNNNTGG	3 cut(s)	137, 319, 388
VpaK11BI	GGWCC	1 cut(s)	446
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	2 cut(s)	467, 519
XhoI	CTCGAG	2 cut(s)	28, 209
XmaI	CCCGGG	1 cut(s)	449
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.