AT1G50350

zinc-ribbon

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009074
Physical Location & Seq
Forward (+)
18648645 .. 18649227
583 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50350.1

Sequence Viewer

Length: 402 bp
ATGACCTCCGGCGGAAACTCAATCGAACCCTCCGTCGTGGCAGAGGCGGAGAAGATGTTATTTTGTTACCAATACGATCAGACCATCACAATCTCTATTACTTCCTCCGCTGATCCTTGTCCTCTTTGCAACGGAGGTTTTCTGGACGAATACGTTGACCCTAACCCTAATCCAATCCCCAATCTAATTCTCCCGATGTCGGATCCAATCTCATCTCGCTTCTCATTCATCCCAGTCATGGACTTCACGAATCCGAGTTTCTTAGGTGAATCAATGGAGCCACAGTCTACTCAGCAACAGCTTAATGCTTTTGATCCGAATCAACTCTCGGATCAAGCTAATCCGTTAGCGGGGAATCACGGAGATTACTTCTTTGGTCGTGGTCTTGAGGATCTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_9

Protein Analysis

133

Amino Acids

14.54

Weight (kDa)

4.05

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_19 PF14369 19 - 51 8.6e-12 zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 287
AciI CCGC 4 cut(s) 12, 47, 108, 350
AclWI GGATC 6 cut(s) 107, 197, 210, 308, 339, 399
AfiI CCNNNNNNNGG 3 cut(s) 199, 238, 350
AluBI AGCT 2 cut(s) 301, 338
AluI AGCT 2 cut(s) 301, 338
AlwI GGATC 6 cut(s) 107, 197, 210, 308, 339, 399
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AsuHPI GGTGA 1 cut(s) 278
BamHI GGATCC 1 cut(s) 202
BccI CCATC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 204, 279
BmrI ACTGGG 1 cut(s) 227
BmuI ACTGGG 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 318
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 269, 299
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 238, 350
Bse1I ACTGG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 318
BseGI GGATG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 3 cut(s) 199, 238, 350
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 3 cut(s) 199, 238, 350
Bsp143I GATC 6 cut(s) 76, 112, 202, 313, 331, 391
BspACI CCGC 4 cut(s) 12, 47, 108, 350
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 204, 279
BspPI GGATC 6 cut(s) 107, 197, 210, 308, 339, 399
BsrI ACTGG 1 cut(s) 233
BssMI GATC 6 cut(s) 76, 112, 202, 313, 331, 391
Bst4CI ACNGT 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 262, 291
BstF5I GGATG 1 cut(s) 228
BstKTI GATC 6 cut(s) 79, 115, 205, 316, 334, 394
BstMBI GATC 6 cut(s) 76, 112, 202, 313, 331, 391
BstX2I RGATCY 2 cut(s) 202, 391
BstYI RGATCY 2 cut(s) 202, 391
BtsCI GGATG 1 cut(s) 228
CviAII CATG 1 cut(s) 238
CviJI RGCY 3 cut(s) 280, 301, 338
CviKI_1 RGCY 3 cut(s) 280, 301, 338
DdeI CTNAG 2 cut(s) 262, 291
DpnI GATC 6 cut(s) 78, 114, 204, 315, 333, 393
DpnII GATC 6 cut(s) 76, 112, 202, 313, 331, 391
EciI GGCGGA 2 cut(s) 27, 62
FaeI CATG 1 cut(s) 241
FaiI YATR 1 cut(s) 239
FatI CATG 1 cut(s) 237
FauI CCCGC 1 cut(s) 343
FblI GTMKAC 1 cut(s) 287
FokI GGATG 1 cut(s) 215
HapII CCGG 1 cut(s) 9
Hin1II CATG 1 cut(s) 241
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 4 cut(s) 250, 269, 319, 355
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 157, 288
Hpy188I TCNGA 6 cut(s) 81, 202, 255, 318, 331, 396
Hpy188III TCNNGA 4 cut(s) 143, 193, 247, 386
Hpy8I GTNNAC 2 cut(s) 157, 288
Hpy99I CGWCG 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 129
HpyF3I CTNAG 2 cut(s) 262, 291
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 6 cut(s) 76, 112, 202, 313, 331, 391
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 3 cut(s) 22, 128, 246
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 65
MalI GATC 6 cut(s) 78, 114, 204, 315, 333, 393
MboI GATC 6 cut(s) 76, 112, 202, 313, 331, 391
MboII GAAGA 1 cut(s) 64
MflI RGATCY 2 cut(s) 202, 391
MluCI AATT 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 7 cut(s) 16, 37, 40, 115, 128, 132, 382
MseI TTAA 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 9
NdeII GATC 6 cut(s) 76, 112, 202, 313, 331, 391
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 2 cut(s) 204, 279
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 4 cut(s) 250, 269, 319, 355
PspN4I GGNNCC 2 cut(s) 204, 279
PsuI RGATCY 2 cut(s) 202, 391
SaqAI TTAA 1 cut(s) 303
Sau3AI GATC 6 cut(s) 76, 112, 202, 313, 331, 391
SetI ASST 6 cut(s) 8, 139, 156, 268, 303, 340
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 1 cut(s) 186
SsiI CCGC 4 cut(s) 12, 47, 108, 350
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 186
TfiI GAWTC 4 cut(s) 250, 269, 319, 355
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TspDTI ATGAA 1 cut(s) 217
TspGWI ACGGA 4 cut(s) 22, 147, 333, 375
XmiI GTMKAC 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.