Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009074

Physical Location & Seq

Genomic Coordinates Reverse (-)

285978 .. 287102

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G000330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCGTCCTCGGGCGGCAACTCCGGCATCGCCCCCGCTCAGCTGTACTTTTGCCACGAGTGCGATCGCACCGTTTCCCTCAACCCTTCCCCTACCTCCGATCTCAATTGCCCTATTTGCAGTGGCGGCTTCCTCGAAGAGATGGAAACCTCTAACCCTAACCCTTCCCCCAATCCCTTCTTCTCCTTCCCCTCCGACCCCCTCCCTTCGCCTCCTCCAGCGGCTTTCCCTCCTTTCTCTTCAGCACCCCAGCAGGCCCCGCCGCCGGACCCCGACGCCTTCGACCCCTTTGTGTTCCTCCAGAACTATTTGCAAACCCTAAGGGCCAATGGTGCCAATGTTCAGTTTGTGATTGATAACAGCGGCGGAGGTGGAGGAGGAGGAGTAGGGGATCCTTCAGCCTTCCGTGTTCCCACCAATCTTAATTTTGGAGATTACTTCTTCGGCCCAGGCCTCGAGCAACTCATCCAGCAGCTTGCCGAGAATGATCCAAACCGCTACGGCACGCCACCGGCTTCAAAGTCTGCCATCGAGGCCTTGCCAGTTGTGAAAATCTCAAAGGAACTCTTGGATTCTGATTCTTCTCAGTGCGCAGTGTGCCAAGCAGATGCCCTGCAAGCACTATACCATTCTGATTGTATTCTTCCCTGGTTGGAATTGCATAACTCATGCCCTGTTTGTCGCCACGAGTTGCCAACCGATGATTCAGAGTATGAGCAGAGGATTCGTGGCGGCGATGCAGCCAATGCAAATACAACTCAATCTTCTGCTGCTGCCGCCAACAATTCCAGTGGTGTTGGTGGGAGTAGGGGGCCAGCTGTTGACATTCAGAGTCAGGCACCACGTACAGTTGAGCGGAGGTTCACCATTTCCTTGCCTCGCCTTTTTAGGGTATTTGGTGGTGCACCTGAGACTAGTAATACTGGGAGTGCAAGTGGAAACAATGATGGGCCTAACTCAGGGAATAGGGGAAGCCATAACTCGGAATCTGAGCCTAGACAAGAAGATCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

338

Amino Acids

35.63

Weight (kDa)

4.44

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	14 - 48	3.5e-14	zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50350 AT3G19950 AT3G19950 AT3G19950
fragaria_vesca	FvH4_5g18350
malus_domestica	MD06G1239200.v1.1 MD14G1245300.v1.1
prunus_persica	Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1
pyrus_communis	pycom14g20630
rosa_chinensis	RchiOBHm_Chr7g0177241
rosa_laevigata	RLG00000005553
rosa_multiflora	Rmu_co8390491.1_g000001 Rmu_sc0005310.1_g000014
rosa_roxburghii	Rroxscaffold_3G00276020
rosa_rugosa	Rorug06G0404100
rosa_samantha	Rh7AG004100 Rh7BG003900 Rh7CG003800 Rh7DG003800
rosa_wichuraiana	Rw7G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	592
AccB1I	GGYRCC	2 cut(s)	332, 838
AccBSI	CCGCTC	2 cut(s)	38, 856
AclWI	GGATC	3 cut(s)	386, 399, 482
AcuI	CTGAAG	2 cut(s)	225, 381
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	47, 847
AfiI	CCNNNNNNNGG	4 cut(s)	265, 889, 959, 982
AgsI	TTSAA	1 cut(s)	519
AhlI	ACTAGT	1 cut(s)	914
AjnI	CCWGG	2 cut(s)	448, 647
AjuI	GAANNNNNNNTTGG	4 cut(s)	164, 196, 688, 720
AluBI	AGCT	3 cut(s)	43, 475, 818
AluI	AGCT	3 cut(s)	43, 475, 818
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	1 cut(s)	905
Alw44I	GTGCAC	1 cut(s)	903
AlwI	GGATC	3 cut(s)	386, 399, 482
Ama87I	CYCGRG	2 cut(s)	10, 455
AoxI	GGCC	7 cut(s)	255, 324, 445, 451, 534, 812, 950
ApaLI	GTGCAC	1 cut(s)	903
ApeKI	GCWGC	4 cut(s)	472, 740, 770, 773
AsiSI	GCGATCGC	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	593
AspS9I	GGNCC	6 cut(s)	256, 268, 324, 446, 812, 950
AsuHPI	GGTGA	1 cut(s)	856
AvaI	CYCGRG	2 cut(s)	10, 455
AvaII	GGWCC	1 cut(s)	268
AxyI	CCTNAGG	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	907
BamHI	GGATCC	1 cut(s)	391
BanI	GGYRCC	2 cut(s)	332, 838
BauI	CACGAG	2 cut(s)	56, 686
Bbv12I	GWGCWC	1 cut(s)	907
BbvI	GCAGC	4 cut(s)	484, 752, 757, 760
BccI	CCATC	3 cut(s)	136, 536, 941
BceAI	ACGGC	1 cut(s)	517
BcgI	CGANNNNNNTGC	2 cut(s)	707, 741
BciT130I	CCWGG	2 cut(s)	450, 649
BcoDI	GTCTC	1 cut(s)	905
BcuI	ACTAGT	1 cut(s)	914
BfaI	CTAG	2 cut(s)	915, 996
BglI	GCCNNNNNGGC	1 cut(s)	533
BglII	AGATCT	1 cut(s)	1006
BlpI	GCTNAGC	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	450, 649
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	2 cut(s)	10, 455
BmgT120I	GGNCC	6 cut(s)	256, 268, 324, 446, 812, 950
BmiI	GGNNCC	6 cut(s)	258, 270, 334, 393, 813, 840
BmrFI	CCNGG	2 cut(s)	450, 649
BmrI	ACTGGG	1 cut(s)	933
BmsI	GCATC	3 cut(s)	36, 598, 727
BmuI	ACTGGG	1 cut(s)	933
BpmI	CTGGAG	2 cut(s)	201, 284
Bpu1102I	GCTNAGC	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	845
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	9, 448, 647
BsaXI	ACNNNNNCTCC	4 cut(s)	369, 399, 919, 949
Bsc4I	CCNNNNNNNGG	4 cut(s)	265, 889, 959, 982
Bse118I	RCCGGY	1 cut(s)	511
Bse1I	ACTGG	3 cut(s)	542, 789, 928
Bse21I	CCTNAGG	1 cut(s)	320
BseBI	CCWGG	2 cut(s)	450, 649
BseDI	CCNNGG	3 cut(s)	9, 448, 647
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	4 cut(s)	265, 889, 959, 982
BseMII	CTCAG	5 cut(s)	53, 599, 900, 972, 981
BseNI	ACTGG	3 cut(s)	542, 789, 928
BseRI	GAGGAG	4 cut(s)	204, 390, 393, 396
BseSI	GKGCMC	1 cut(s)	907
BseXI	GCAGC	4 cut(s)	484, 752, 757, 760
BseYI	CCCAGC	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	7 cut(s)	257, 326, 447, 453, 536, 814, 952
BshNI	GGYRCC	2 cut(s)	332, 838
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	907
BsiHKCI	CYCGRG	2 cut(s)	10, 455
BsiSI	CCGG	3 cut(s)	24, 266, 512
BslI	CCNNNNNNNGG	4 cut(s)	265, 889, 959, 982
BsmAI	GTCTC	1 cut(s)	905
BsnI	GGCC	7 cut(s)	257, 326, 447, 453, 536, 814, 952
BsoBI	CYCGRG	2 cut(s)	10, 455
Bsp1286I	GDGCHC	1 cut(s)	907
Bsp143I	GATC	5 cut(s)	64, 100, 391, 487, 1006
Bsp1720I	GCTNAGC	1 cut(s)	39
BspANI	GGCC	7 cut(s)	257, 326, 447, 453, 536, 814, 952
BspCNI	CTCAG	5 cut(s)	52, 598, 901, 971, 982
BspLI	GGNNCC	6 cut(s)	258, 270, 334, 393, 813, 840
BspPI	GGATC	3 cut(s)	386, 399, 482
BspT107I	GGYRCC	2 cut(s)	332, 838
BsrBI	CCGCTC	2 cut(s)	38, 856
BsrFI	RCCGGY	1 cut(s)	511
BsrI	ACTGG	3 cut(s)	542, 789, 928
BssAI	RCCGGY	1 cut(s)	511
BssECI	CCNNGG	3 cut(s)	9, 448, 647
BssMI	GATC	5 cut(s)	64, 100, 391, 487, 1006
BssNI	GRCGYC	1 cut(s)	276
BssSI	CACGAG	2 cut(s)	56, 686
Bst2BI	CACGAG	2 cut(s)	56, 686
Bst2UI	CCWGG	2 cut(s)	450, 649
Bst4CI	ACNGT	2 cut(s)	73, 850
Bst6I	CTCTTC	2 cut(s)	132, 244
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstBAI	YACGTR	1 cut(s)	845
BstC8I	GCNNGC	5 cut(s)	255, 477, 506, 618, 816
BstDEI	CTNAG	6 cut(s)	39, 320, 585, 909, 958, 990
BstENI	CCTNNNNNAGG	1 cut(s)	957
BstF5I	GGATG	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	593
BstKTI	GATC	5 cut(s)	67, 103, 394, 490, 1009
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	5 cut(s)	64, 100, 391, 487, 1006
BstMCI	CGRYCG	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	450, 649
BstSCI	CCNGG	2 cut(s)	448, 647
BstSLI	GKGCMC	1 cut(s)	907
BstV1I	GCAGC	4 cut(s)	484, 752, 757, 760
BstX2I	RGATCY	2 cut(s)	391, 1006
BstYI	RGATCY	2 cut(s)	391, 1006
Bsu36I	CCTNAGG	1 cut(s)	320
BsuRI	GGCC	7 cut(s)	257, 326, 447, 453, 536, 814, 952
BtgZI	GCGATG	2 cut(s)	13, 750
BtsCI	GGATG	1 cut(s)	465
BtsI	GCAGTG	2 cut(s)	127, 600
BtsIMutI	CAGTG	4 cut(s)	127, 593, 600, 796
Cac8I	GCNNGC	5 cut(s)	255, 477, 506, 618, 816
CfoI	GCGC	1 cut(s)	593
Cfr10I	RCCGGY	1 cut(s)	511
Cfr13I	GGNCC	6 cut(s)	256, 268, 324, 446, 812, 950
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	46, 846
CspCI	CAANNNNNGTGG	2 cut(s)	772, 807
CviAII	CATG	1 cut(s)	669
CviQI	GTAC	2 cut(s)	46, 846
DdeI	CTNAG	6 cut(s)	39, 320, 585, 909, 958, 990
DpnI	GATC	5 cut(s)	66, 102, 393, 489, 1008
DpnII	GATC	5 cut(s)	64, 100, 391, 487, 1006
Eam1104I	CTCTTC	2 cut(s)	132, 244
EarI	CTCTTC	2 cut(s)	132, 244
EciI	GGCGGA	1 cut(s)	381
Eco147I	AGGCCT	2 cut(s)	453, 536
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	225, 381
Eco81I	CCTNAGG	1 cut(s)	320
Eco88I	CYCGRG	2 cut(s)	10, 455
EcoNI	CCTNNNNNAGG	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	448, 647
FaeI	CATG	1 cut(s)	672
FaiI	YATR	5 cut(s)	625, 663, 670, 714, 978
FalI	AAGNNNNNCTT	3 cut(s)	551, 583, 993
FatI	CATG	1 cut(s)	668
FauI	CCCGC	2 cut(s)	43, 267
FokI	GGATG	1 cut(s)	452
FspBI	CTAG	2 cut(s)	915, 996
FspI	TGCGCA	1 cut(s)	592
GlaI	GCGC	1 cut(s)	592
GsaI	CCCAGC	1 cut(s)	253
GsuI	CTGGAG	2 cut(s)	201, 284
HaeIII	GGCC	7 cut(s)	257, 326, 447, 453, 536, 814, 952
HapII	CCGG	3 cut(s)	24, 266, 512
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	593
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	1 cut(s)	672
Hin6I	GCGC	1 cut(s)	591
HinP1I	GCGC	1 cut(s)	591
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HinfI	GANTC	6 cut(s)	572, 578, 704, 724, 832, 986
HpaII	CCGG	3 cut(s)	24, 266, 512
HphI	GGTGA	1 cut(s)	856
Hpy166II	GTNNAC	3 cut(s)	823, 864, 905
Hpy188I	TCNGA	8 cut(s)	100, 196, 577, 634, 709, 831, 985, 991
Hpy188III	TCNNGA	2 cut(s)	301, 1010
Hpy8I	GTNNAC	3 cut(s)	823, 864, 905
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	8 cut(s)	96, 174, 187, 196, 216, 289, 405, 412
HpyCH4III	ACNGT	2 cut(s)	73, 850
HpyCH4IV	ACGT	1 cut(s)	844
HpyCH4V	TGCA	8 cut(s)	120, 313, 616, 661, 740, 749, 905, 932
HpyF3I	CTNAG	6 cut(s)	39, 320, 585, 909, 958, 990
HpySE526I	ACGT	1 cut(s)	844
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	672
HspAI	GCGC	1 cut(s)	591
Kzo9I	GATC	5 cut(s)	64, 100, 391, 487, 1006
Lsp1109I	GCAGC	4 cut(s)	484, 752, 757, 760
LweI	GCATC	3 cut(s)	36, 598, 727
MaeI	CTAG	2 cut(s)	915, 996
MaeII	ACGT	1 cut(s)	844
MalI	GATC	5 cut(s)	66, 102, 393, 489, 1008
MbiI	CCGCTC	2 cut(s)	38, 856
MboI	GATC	5 cut(s)	64, 100, 391, 487, 1006
MboII	GAAGA	8 cut(s)	149, 172, 231, 433, 573, 635, 756, 1016
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	2 cut(s)	391, 1006
MhlI	GDGCHC	1 cut(s)	907
MluCI	AATT	4 cut(s)	106, 424, 656, 784
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	2 cut(s)	219, 633
MseI	TTAA	1 cut(s)	423
MspA1I	CMGCKG	4 cut(s)	43, 221, 363, 818
MspI	CCGG	3 cut(s)	24, 266, 512
MspR9I	CCNGG	2 cut(s)	450, 649
MunI	CAATTG	1 cut(s)	106
MvaI	CCWGG	2 cut(s)	450, 649
NdeII	GATC	5 cut(s)	64, 100, 391, 487, 1006
NlaIII	CATG	1 cut(s)	672
NlaIV	GGNNCC	6 cut(s)	258, 270, 334, 393, 813, 840
NmeAIII	GCCGAG	1 cut(s)	505
NsbI	TGCGCA	1 cut(s)	592
PaeR7I	CTCGAG	1 cut(s)	455
PceI	AGGCCT	2 cut(s)	453, 536
PfeI	GAWTC	5 cut(s)	572, 578, 704, 724, 986
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
Ppu21I	YACGTR	1 cut(s)	845
Psp6I	CCWGG	2 cut(s)	448, 647
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	2 cut(s)	448, 647
PspN4I	GGNNCC	6 cut(s)	258, 270, 334, 393, 813, 840
PspPI	GGNCC	6 cut(s)	256, 268, 324, 446, 812, 950
PspXI	VCTCGAGB	1 cut(s)	455
PsuI	RGATCY	2 cut(s)	391, 1006
PvuI	CGATCG	1 cut(s)	67
PvuII	CAGCTG	2 cut(s)	43, 818
RgaI	GCGATCGC	1 cut(s)	67
RsaI	GTAC	2 cut(s)	47, 847
RsaNI	GTAC	2 cut(s)	46, 846
SaqAI	TTAA	1 cut(s)	423
Sau3AI	GATC	5 cut(s)	64, 100, 391, 487, 1006
Sau96I	GGNCC	6 cut(s)	256, 268, 324, 446, 812, 950
SchI	GAGTC	1 cut(s)	841
ScrFI	CCNGG	2 cut(s)	450, 649
SduI	GDGCHC	1 cut(s)	907
SetI	ASST	9 cut(s)	45, 98, 152, 373, 477, 820, 847, 863, 910
SfaAI	GCGATCGC	1 cut(s)	67
SfaNI	GCATC	3 cut(s)	36, 598, 727
Sfr274I	CTCGAG	1 cut(s)	455
SgfI	GCGATCGC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SpeI	ACTAGT	1 cut(s)	914
Sse9I	AATT	4 cut(s)	106, 424, 656, 784
SseBI	AGGCCT	2 cut(s)	453, 536
SspMI	CTAG	2 cut(s)	915, 996
StuI	AGGCCT	2 cut(s)	453, 536
StyD4I	CCNGG	2 cut(s)	448, 647
TaaI	ACNGT	2 cut(s)	73, 850
TaiI	ACGT	1 cut(s)	847
TaqI	TCGA	4 cut(s)	135, 282, 456, 531
TasI	AATT	4 cut(s)	106, 424, 656, 784
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	7 cut(s)	18, 129, 224, 265, 366, 735, 779
TfiI	GAWTC	5 cut(s)	572, 578, 704, 724, 986
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	4 cut(s)	127, 593, 600, 796
TseI	GCWGC	4 cut(s)	472, 740, 770, 773
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	4 cut(s)	127, 593, 600, 796
VneI	GTGCAC	1 cut(s)	903
VpaK11BI	GGWCC	1 cut(s)	268
XagI	CCTNNNNNAGG	1 cut(s)	957
XhoI	CTCGAG	1 cut(s)	455
XspI	CTAG	2 cut(s)	915, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.