Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009074

Physical Location & Seq

Genomic Coordinates Forward (+)

6942623 .. 6945224

Gene Structure 2602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCAGCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCAAACAGTCACAATCTCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAATACGAAGACCCTAACCCTAATCAATCCCTCAATTTCAACCCTAACTCTTCTGATTCCTTTTTCCCCATGGCCGATCCTTTCTCCACCTTGCTCCCGCTCATATTCGGCTCTTCCGCTGCCGCTCCTTCCGGCATGGACTTCATGAGCTTATTCGGTCCTTCGATGCAACCACAGGCTCGTTCCACTCAGCAGAATCCTCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTCAGAATCATCTCCAGACTTTGCGATCTAGCGGTACGCACTTTGAGTTCGTGATCGAGAATCATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGATTACTTCTTTGGTCCAGGTCTTGAGCAGTTGATTCAGCAACTAGCTGAGAATGATCCTAATCGTTACGGAACTCCTCCTGCTTCCAAATCCGCCATTGATGCTCTTCCTACTGTTAAGGTAACGAAGGATATGTTGAAATCGGAGATGAACCAATGCGCGGTGTGTATGGATGAGTTTGAGGATGGTAGCGATGTTAAGCAGATGCCTTGTAAGCACGTCTTTCATCAGGACTGTTTGCTCCCTTGGCTGGAGTTGCATAATTCGTGTCCTGTTTGTCGATTCGAGTTGCCTACGGATGATCCTGATTATGAGAACAGGAGTCAAGGAAGTCAGGGGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGCCGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCAGGCTCGGGAGCACCTGGTACTGGTGGAGGTAATCTTGAGACCAGGGGTGAAGATTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

328

Amino Acids

35.7

Weight (kDa)

4.35

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	78 - 111	2.2e-14	zinc-ribbon
zf-rbx1	PF12678	271 - 315	4e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	272 - 315	6.8e-16	Ring finger domain
zf-C3HC4_2	PF13923	273 - 314	4.4e-14	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	273 - 301	2.6e-10	RING-like zinc finger
zf-C3HC4	PF00097	274 - 314	8e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	274 - 312	3e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50350 AT3G19950 AT3G19950 AT3G19950
fragaria_vesca	FvH4_5g18350
malus_domestica	MD06G1239200.v1.1 MD14G1245300.v1.1
prunus_persica	Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1
pyrus_communis	pycom14g20630
rosa_chinensis	RchiOBHm_Chr7g0177241
rosa_laevigata	RLG00000005553
rosa_multiflora	Rmu_co8390491.1_g000001 Rmu_sc0005310.1_g000014
rosa_roxburghii	Rroxscaffold_3G00276020
rosa_rugosa	Rorug06G0404100
rosa_samantha	Rh7AG004100 Rh7BG003900 Rh7CG003800 Rh7DG003800
rosa_wichuraiana	Rw7G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	253, 278
AccI	GTMKAC	1 cut(s)	880
AccII	CGCG	2 cut(s)	365, 650
AciI	CCGC	9 cut(s)	30, 33, 111, 251, 270, 276, 417, 582, 650
AclWI	GGATC	8 cut(s)	110, 224, 365, 452, 465, 539, 785, 853
AcoI	YGGCCR	2 cut(s)	225, 893
AcsI	RAATTY	2 cut(s)	16, 481
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	866
AfaI	GTAC	2 cut(s)	421, 943
AfiI	CCNNNNNNNGG	3 cut(s)	649, 739, 944
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	21, 152, 193, 628
AjiI	CACGTC	1 cut(s)	709
AjnI	CCWGG	5 cut(s)	460, 475, 505, 937, 965
AluBI	AGCT	2 cut(s)	303, 536
AluI	AGCT	2 cut(s)	303, 536
Alw21I	GWGCWC	1 cut(s)	937
Alw26I	GTCTC	2 cut(s)	898, 956
AlwI	GGATC	8 cut(s)	110, 224, 365, 452, 465, 539, 785, 853
Ama87I	CYCGRG	1 cut(s)	928
AoxI	GGCC	2 cut(s)	225, 893
ApeKI	GCWGC	3 cut(s)	35, 38, 272
ApoI	RAATTY	2 cut(s)	16, 481
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	2 cut(s)	311, 503
AsuHPI	GGTGA	3 cut(s)	500, 845, 983
AvaI	CYCGRG	1 cut(s)	928
AvaII	GGWCC	2 cut(s)	311, 503
BamHI	GGATCC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	937
BbvI	GCAGC	3 cut(s)	47, 50, 259
BccI	CCATC	3 cut(s)	668, 830, 905
BceAI	ACGGC	1 cut(s)	880
BciT130I	CCWGG	5 cut(s)	462, 477, 507, 939, 967
BcoDI	GTCTC	2 cut(s)	898, 956
BfaI	CTAG	2 cut(s)	414, 533
BisI	GCNGC	5 cut(s)	33, 36, 39, 273, 276
BlsI	GCNGC	5 cut(s)	34, 37, 40, 274, 277
Bme1390I	CCNGG	5 cut(s)	462, 477, 507, 939, 967
Bme18I	GGWCC	2 cut(s)	311, 503
BmeT110I	CYCGRG	1 cut(s)	928
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	2 cut(s)	311, 503
BmiI	GGNNCC	2 cut(s)	28, 459
BmrFI	CCNGG	5 cut(s)	462, 477, 507, 939, 967
BmsI	GCATC	3 cut(s)	309, 580, 684
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	2 cut(s)	383, 761
BpuEI	CTTGAG	2 cut(s)	533, 980
BsaBI	GATNNNNATC	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	866
BsaI	GGTCTC	1 cut(s)	956
BsaJI	CCNNGG	7 cut(s)	139, 222, 476, 734, 869, 890, 966
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	3 cut(s)	649, 739, 944
Bse1I	ACTGG	3 cut(s)	28, 73, 949
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	5 cut(s)	462, 477, 507, 939, 967
BseDI	CCNNGG	7 cut(s)	139, 222, 476, 734, 869, 890, 966
BseGI	GGATG	5 cut(s)	107, 448, 667, 679, 793
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	649, 739, 944
BseMII	CTCAG	3 cut(s)	356, 368, 528
BseNI	ACTGG	3 cut(s)	28, 73, 949
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	3 cut(s)	47, 50, 259
Bsh1236I	CGCG	2 cut(s)	365, 650
BshFI	GGCC	2 cut(s)	227, 895
BsiHKAI	GWGCWC	1 cut(s)	937
BsiHKCI	CYCGRG	1 cut(s)	928
BsiSI	CCGG	3 cut(s)	9, 44, 285
BslI	CCNNNNNNNGG	3 cut(s)	649, 739, 944
BsmAI	GTCTC	2 cut(s)	898, 956
BsnI	GGCC	2 cut(s)	227, 895
Bso31I	GGTCTC	1 cut(s)	956
BsoBI	CYCGRG	1 cut(s)	928
Bsp1286I	GDGCHC	1 cut(s)	937
Bsp143I	GATC	9 cut(s)	115, 229, 370, 410, 438, 457, 544, 790, 845
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	9 cut(s)	30, 33, 111, 251, 270, 276, 417, 582, 650
BspANI	GGCC	2 cut(s)	227, 895
BspCNI	CTCAG	3 cut(s)	355, 367, 529
BspFNI	CGCG	2 cut(s)	365, 650
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	28, 459
BspPI	GGATC	8 cut(s)	110, 224, 365, 452, 465, 539, 785, 853
BspQI	GCTCTTC	2 cut(s)	271, 600
BspTNI	GGTCTC	1 cut(s)	956
BsrBI	CCGCTC	2 cut(s)	253, 278
BsrI	ACTGG	3 cut(s)	28, 73, 949
BssECI	CCNNGG	7 cut(s)	139, 222, 476, 734, 869, 890, 966
BssMI	GATC	9 cut(s)	115, 229, 370, 410, 438, 457, 544, 790, 845
BssNAI	GTATAC	1 cut(s)	881
BssNI	GRCGYC	1 cut(s)	866
BssT1I	CCWWGG	4 cut(s)	139, 222, 734, 890
Bst1107I	GTATAC	1 cut(s)	881
Bst2UI	CCWGG	5 cut(s)	462, 477, 507, 939, 967
Bst4CI	ACNGT	3 cut(s)	88, 604, 725
Bst6I	CTCTTC	3 cut(s)	208, 271, 600
BstACI	GRCGYC	1 cut(s)	866
BstDEI	CTNAG	3 cut(s)	342, 354, 537
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	5 cut(s)	107, 448, 667, 679, 793
BstFNI	CGCG	2 cut(s)	365, 650
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	9 cut(s)	118, 232, 373, 413, 441, 460, 547, 793, 848
BstMAI	GTCTC	2 cut(s)	898, 956
BstMBI	GATC	9 cut(s)	115, 229, 370, 410, 438, 457, 544, 790, 845
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 75, 590, 703, 736, 745
BstNI	CCWGG	5 cut(s)	462, 477, 507, 939, 967
BstSCI	CCNGG	5 cut(s)	460, 475, 505, 937, 965
BstUI	CGCG	2 cut(s)	365, 650
BstV1I	GCAGC	3 cut(s)	47, 50, 259
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BstZ17I	GTATAC	1 cut(s)	881
BsuRI	GGCC	2 cut(s)	227, 895
BtgI	CCRYGG	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	696
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	5 cut(s)	107, 448, 667, 679, 793
BtsIMutI	CAGTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	311, 503
CseI	GACGC	2 cut(s)	371, 874
CsiI	ACCWGGT	1 cut(s)	937
Csp6I	GTAC	2 cut(s)	420, 942
CviAII	CATG	3 cut(s)	223, 289, 298
CviQI	GTAC	2 cut(s)	420, 942
DdeI	CTNAG	3 cut(s)	342, 354, 537
DpnI	GATC	9 cut(s)	117, 231, 372, 412, 440, 459, 546, 792, 847
DpnII	GATC	9 cut(s)	115, 229, 370, 410, 438, 457, 544, 790, 845
EaeI	YGGCCR	2 cut(s)	225, 893
Eam1104I	CTCTTC	3 cut(s)	208, 271, 600
EarI	CTCTTC	3 cut(s)	208, 271, 600
EciI	GGCGGA	2 cut(s)	19, 571
Eco130I	CCWWGG	4 cut(s)	139, 222, 734, 890
Eco31I	GGTCTC	1 cut(s)	956
Eco47I	GGWCC	2 cut(s)	311, 503
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	928
EcoRII	CCWGG	5 cut(s)	460, 475, 505, 937, 965
EcoT14I	CCWWGG	4 cut(s)	139, 222, 734, 890
ErhI	CCWWGG	4 cut(s)	139, 222, 734, 890
FaeI	CATG	3 cut(s)	226, 292, 301
FalI	AAGNNNNNCTT	6 cut(s)	47, 79, 132, 164, 695, 727
FatI	CATG	3 cut(s)	222, 288, 297
FauI	CCCGC	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	880
Fnu4HI	GCNGC	5 cut(s)	33, 36, 39, 273, 276
FokI	GGATG	5 cut(s)	94, 435, 674, 686, 800
Fsp4HI	GCNGC	5 cut(s)	33, 36, 39, 273, 276
FspBI	CTAG	2 cut(s)	414, 533
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	5 cut(s)	33, 36, 39, 273, 276
GsuI	CTGGAG	2 cut(s)	383, 761
HaeIII	GGCC	2 cut(s)	227, 895
HapII	CCGG	3 cut(s)	9, 44, 285
HgaI	GACGC	2 cut(s)	371, 874
HhaI	GCGC	1 cut(s)	650
Hin1I	GRCGYC	1 cut(s)	866
Hin1II	CATG	3 cut(s)	226, 292, 301
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	7 cut(s)	209, 349, 391, 445, 523, 771, 811
HpaII	CCGG	3 cut(s)	9, 44, 285
HphI	GGTGA	3 cut(s)	500, 845, 983
Hpy166II	GTNNAC	3 cut(s)	52, 378, 881
Hpy188I	TCNGA	5 cut(s)	208, 361, 390, 457, 634
Hpy8I	GTNNAC	3 cut(s)	52, 378, 881
HpyAV	CCTTC	4 cut(s)	291, 324, 462, 610
HpyCH4III	ACNGT	3 cut(s)	88, 604, 725
HpyCH4IV	ACGT	2 cut(s)	380, 708
HpyCH4V	TGCA	3 cut(s)	78, 322, 748
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 75, 590, 703, 736, 745
HpyF3I	CTNAG	3 cut(s)	342, 354, 537
HpySE526I	ACGT	2 cut(s)	380, 708
Hsp92I	GRCGYC	1 cut(s)	866
Hsp92II	CATG	3 cut(s)	226, 292, 301
HspAI	GCGC	1 cut(s)	648
Kzo9I	GATC	9 cut(s)	115, 229, 370, 410, 438, 457, 544, 790, 845
LguI	GCTCTTC	2 cut(s)	271, 600
LmnI	GCTCC	5 cut(s)	32, 252, 283, 735, 932
Lsp1109I	GCAGC	3 cut(s)	47, 50, 259
LweI	GCATC	3 cut(s)	309, 580, 684
MabI	ACCWGGT	1 cut(s)	937
MaeI	CTAG	2 cut(s)	414, 533
MaeII	ACGT	2 cut(s)	380, 708
MaeIII	GTNAC	4 cut(s)	88, 134, 554, 610
MalI	GATC	9 cut(s)	117, 231, 372, 412, 440, 459, 546, 792, 847
MbiI	CCGCTC	2 cut(s)	253, 278
MboI	GATC	9 cut(s)	115, 229, 370, 410, 438, 457, 544, 790, 845
MboII	GAAGA	8 cut(s)	55, 164, 173, 195, 258, 377, 587, 986
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	937
MluCI	AATT	6 cut(s)	16, 99, 129, 187, 481, 751
MluI	ACGCGT	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	820
MnlI	CCTC	9 cut(s)	40, 115, 194, 363, 576, 664, 847, 864, 944
MseI	TTAA	2 cut(s)	606, 687
MspA1I	CMGCKG	2 cut(s)	113, 272
MspI	CCGG	3 cut(s)	9, 44, 285
MspR9I	CCNGG	5 cut(s)	462, 477, 507, 939, 967
MvaI	CCWGG	5 cut(s)	462, 477, 507, 939, 967
MvnI	CGCG	2 cut(s)	365, 650
MwoI	GCNNNNNNNGC	6 cut(s)	38, 75, 590, 703, 736, 745
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	9 cut(s)	115, 229, 370, 410, 438, 457, 544, 790, 845
NlaIII	CATG	3 cut(s)	226, 292, 301
NlaIV	GGNNCC	2 cut(s)	28, 459
NmeAIII	GCCGAG	1 cut(s)	894
NmuCI	GTSAC	1 cut(s)	88
PagI	TCATGA	1 cut(s)	297
PciSI	GCTCTTC	2 cut(s)	271, 600
PfeI	GAWTC	6 cut(s)	209, 349, 391, 445, 523, 771
PkrI	GCNGC	5 cut(s)	34, 37, 40, 274, 277
PleI	GAGTC	1 cut(s)	819
PpsI	GAGTC	1 cut(s)	819
Psp6I	CCWGG	5 cut(s)	460, 475, 505, 937, 965
PspGI	CCWGG	5 cut(s)	460, 475, 505, 937, 965
PspN4I	GGNNCC	2 cut(s)	28, 459
PspPI	GGNCC	2 cut(s)	311, 503
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	2 cut(s)	421, 943
RsaNI	GTAC	2 cut(s)	420, 942
SapI	GCTCTTC	2 cut(s)	271, 600
SaqAI	TTAA	2 cut(s)	606, 687
SatI	GCNGC	5 cut(s)	33, 36, 39, 273, 276
Sau3AI	GATC	9 cut(s)	115, 229, 370, 410, 438, 457, 544, 790, 845
Sau96I	GGNCC	2 cut(s)	311, 503
SchI	GAGTC	1 cut(s)	820
ScrFI	CCNGG	5 cut(s)	462, 477, 507, 939, 967
SduI	GDGCHC	1 cut(s)	937
SexAI	ACCWGGT	1 cut(s)	937
SfaNI	GCATC	3 cut(s)	309, 580, 684
SinI	GGWCC	2 cut(s)	311, 503
SmlI	CTYRAG	2 cut(s)	512, 959
SmoI	CTYRAG	2 cut(s)	512, 959
Sse9I	AATT	6 cut(s)	16, 99, 129, 187, 481, 751
SsiI	CCGC	9 cut(s)	30, 33, 111, 251, 270, 276, 417, 582, 650
SspMI	CTAG	2 cut(s)	414, 533
StyD4I	CCNGG	5 cut(s)	460, 475, 505, 937, 965
StyI	CCWWGG	4 cut(s)	139, 222, 734, 890
TaaI	ACNGT	3 cut(s)	88, 604, 725
TaiI	ACGT	2 cut(s)	383, 711
TaqI	TCGA	4 cut(s)	317, 441, 769, 774
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	6 cut(s)	16, 99, 129, 187, 481, 751
TauI	GCSGC	2 cut(s)	35, 278
TfiI	GAWTC	6 cut(s)	209, 349, 391, 445, 523, 771
Tru1I	TTAA	2 cut(s)	606, 687
Tru9I	TTAA	2 cut(s)	606, 687
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	3 cut(s)	35, 38, 272
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	286, 653, 704
TspGWI	ACGGA	3 cut(s)	363, 573, 800
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	311, 503
XapI	RAATTY	2 cut(s)	16, 481
XmiI	GTMKAC	1 cut(s)	880
XspI	CTAG	2 cut(s)	414, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.