Rh7CG003800

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
349557 .. 351383
1827 bp
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UTR
Exon/CDS
Intron
Rh7CG003800.1

Sequence Viewer

Length: 1122 bp
ATGTCGTCCTCGGGCGGCAACTCCGGCATCGCCCCCTCTCAGCTTTACTTTTGCCACCAGTGCGATCGCACCGTTTCCCTCAACCCTTCCCCTACCTCCGATCTGAATTGCCCTATTTGCAGTGGCGGCTTCCTCGAAGAGATGGAAACCTCTAACCCTAACCCTTCCCCCAATCCCTTCTTCTCCTTCCCCTCCGACGCCCCTCCCTTCGCCTCCTCCAGCGGCTTTCCCTCCTTTCTCTTCAGCACCCCAGCAGGCCCCGCCGCCGGTGGTCCGGGAAATCTTGGCGACGAACTCTCCGCCCTCCTCGGTGGTGGCGCGCCTTCCTCCCGCTCGTCCCCCTTTCAGGACCCCGACGCCTTCGACCCCTTTGTGTTCCTCCAGAACTATTTGCAAACCCTAAGGGCCAATGGTGCCAATGTTCAGTTTGTGATTGATAACAGCGGCGGAGGAGTAGGGGATCCTTCAGCTTTCCGTGTTCCCACCAATCTTAATTTTGGAGATTACTTCTTCGGCCCAGGCCTCGAGCAACTCATCCAGCAGCTTGCCGAGAATGATCCAAACCGCTACGGCACGCCACCGGCTTCAAAGTCTGCCATCGAGGCCTTGCCAGTTGTGAAAATCTCAAAGGAACTCTTGGATTCTGATTCTTCTCAGTGCGCAGTGTGTAAGGACTCGTTTGAGCTTGGGGAGGAGGCCAAGCAGATGCCCTGCAAGCACTTATACCATTCTGATTGTATTCTTCCCTGGTTGGAATTGCATAACTCATGCCCTGTTTGTCGCCACGAGTTGCCAACCGATGATTCAGAGTATGAGCAGAGGATTCGTGGCGGCGATGCAGCCAATGCAAATACAACTCCATCTTCTGCTGCTGCTGCTGCCGCCAACAATTCCAGTGGTGTTGGTGGGAGTAGGGGGCCAGCTGTTGACATTCAGAGTCAGGCACCTCGTACAGTTGAGCGGAGGTTCACCATTTCCTTGCCTCGCTTATTTAGGGTATTTGGTGGTGCACCCGAGACTAGTAATACTGGGAGTGCAAGTGGAAACAATGATGGGCCTAACTCAGGGAATAGGGGAAGCCATAACTCGGAATCTGAGCCTAGACAAGAAGATCTTGATTGA

Protein Analysis

373

Amino Acids

39.22

Weight (kDa)

4.57

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_19 PF14369 14 - 48 1.7e-14 zinc-ribbon
zf-RING_2 PF13639 219 - 261 4.7e-13 Ring finger domain
zf-C3HC4_2 PF13923 219 - 260 7.4e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 219 - 247 7.2e-08 RING-like zinc finger
zf-C3HC4 PF00097 220 - 260 2e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 661
AccB1I GGYRCC 2 cut(s) 413, 943
AccBSI CCGCTC 2 cut(s) 333, 961
AccII CGCG 1 cut(s) 320
AclWI GGATC 3 cut(s) 455, 468, 551
AcuI CTGAAG 2 cut(s) 226, 450
AcyI GRCGYC 2 cut(s) 198, 357
AfaI GTAC 1 cut(s) 952
AfiI CCNNNNNNNGG 4 cut(s) 266, 346, 1064, 1087
AgsI TTSAA 1 cut(s) 588
AhlI ACTAGT 1 cut(s) 1019
AjnI CCWGG 2 cut(s) 517, 746
AjuI GAANNNNNNNTTGG 4 cut(s) 164, 196, 787, 819
AluBI AGCT 5 cut(s) 43, 470, 544, 685, 923
AluI AGCT 5 cut(s) 43, 470, 544, 685, 923
Alw21I GWGCWC 1 cut(s) 1012
Alw26I GTCTC 1 cut(s) 1010
Alw44I GTGCAC 1 cut(s) 1008
AlwI GGATC 3 cut(s) 455, 468, 551
Ama87I CYCGRG 3 cut(s) 10, 524, 1013
AoxI GGCC 8 cut(s) 256, 405, 514, 520, 603, 696, 917, 1055
ApaLI GTGCAC 1 cut(s) 1008
ApeKI GCWGC 6 cut(s) 541, 839, 869, 872, 875, 878
AscI GGCGCGCC 1 cut(s) 318
AsiSI GCGATCGC 1 cut(s) 67
AspLEI GCGC 3 cut(s) 320, 322, 662
AspS9I GGNCC 7 cut(s) 257, 272, 349, 405, 515, 917, 1055
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 961
AvaI CYCGRG 3 cut(s) 10, 524, 1013
AvaII GGWCC 2 cut(s) 272, 349
AxyI CCTNAGG 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 1012
BamHI GGATCC 1 cut(s) 460
BanI GGYRCC 2 cut(s) 413, 943
BauI CACGAG 1 cut(s) 785
Bbv12I GWGCWC 1 cut(s) 1012
BbvI GCAGC 6 cut(s) 553, 851, 856, 859, 862, 865
BccI CCATC 4 cut(s) 136, 605, 868, 1046
BceAI ACGGC 1 cut(s) 586
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 2 cut(s) 519, 748
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 1010
BcuI ACTAGT 1 cut(s) 1019
BfaI CTAG 2 cut(s) 1020, 1101
BglI GCCNNNNNGGC 1 cut(s) 602
BglII AGATCT 1 cut(s) 1111
Bme1390I CCNGG 3 cut(s) 276, 519, 748
Bme18I GGWCC 2 cut(s) 272, 349
BmeT110I CYCGRG 3 cut(s) 10, 524, 1013
BmgT120I GGNCC 7 cut(s) 257, 272, 349, 405, 515, 917, 1055
BmiI GGNNCC 6 cut(s) 259, 351, 415, 462, 918, 945
BmrFI CCNGG 3 cut(s) 276, 519, 748
BmrI ACTGGG 1 cut(s) 1038
BmsI GCATC 3 cut(s) 36, 696, 826
BmuI ACTGGG 1 cut(s) 1038
BpmI CTGGAG 2 cut(s) 202, 365
BpuMI CCSGG 1 cut(s) 276
BsaHI GRCGYC 2 cut(s) 198, 357
BsaJI CCNNGG 4 cut(s) 9, 307, 517, 746
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 1024, 1054
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 346, 1064, 1087
Bse118I RCCGGY 2 cut(s) 266, 580
Bse1I ACTGG 4 cut(s) 58, 611, 894, 1033
Bse21I CCTNAGG 1 cut(s) 401
BseBI CCWGG 2 cut(s) 519, 748
BseDI CCNNGG 4 cut(s) 9, 307, 517, 746
BseGI GGATG 1 cut(s) 534
BseLI CCNNNNNNNGG 4 cut(s) 266, 346, 1064, 1087
BseMII CTCAG 4 cut(s) 53, 668, 1077, 1086
BseNI ACTGG 4 cut(s) 58, 611, 894, 1033
BsePI GCGCGC 1 cut(s) 318
BseRI GAGGAG 4 cut(s) 205, 296, 465, 707
BseSI GKGCMC 1 cut(s) 1012
BseXI GCAGC 6 cut(s) 553, 851, 856, 859, 862, 865
BseYI CCCAGC 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 320
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 8 cut(s) 258, 407, 516, 522, 605, 698, 919, 1057
BshNI GGYRCC 2 cut(s) 413, 943
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 1012
BsiHKCI CYCGRG 3 cut(s) 10, 524, 1013
BsiSI CCGG 4 cut(s) 24, 267, 275, 581
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 4 cut(s) 266, 346, 1064, 1087
BsmAI GTCTC 1 cut(s) 1010
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 8 cut(s) 258, 407, 516, 522, 605, 698, 919, 1057
BsoBI CYCGRG 3 cut(s) 10, 524, 1013
Bsp1286I GDGCHC 1 cut(s) 1012
Bsp143I GATC 5 cut(s) 64, 100, 460, 556, 1111
BspANI GGCC 8 cut(s) 258, 407, 516, 522, 605, 698, 919, 1057
BspCNI CTCAG 4 cut(s) 52, 667, 1076, 1087
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 6 cut(s) 259, 351, 415, 462, 918, 945
BspPI GGATC 3 cut(s) 455, 468, 551
BspT107I GGYRCC 2 cut(s) 413, 943
BsrBI CCGCTC 2 cut(s) 333, 961
BsrFI RCCGGY 2 cut(s) 266, 580
BsrI ACTGG 4 cut(s) 58, 611, 894, 1033
BssAI RCCGGY 2 cut(s) 266, 580
BssECI CCNNGG 4 cut(s) 9, 307, 517, 746
BssHII GCGCGC 1 cut(s) 318
BssMI GATC 5 cut(s) 64, 100, 460, 556, 1111
BssNI GRCGYC 2 cut(s) 198, 357
BssSI CACGAG 1 cut(s) 785
Bst2BI CACGAG 1 cut(s) 785
Bst2UI CCWGG 2 cut(s) 519, 748
Bst4CI ACNGT 2 cut(s) 73, 955
Bst6I CTCTTC 2 cut(s) 132, 245
BstACI GRCGYC 2 cut(s) 198, 357
BstAPI GCANNNNNTGC 1 cut(s) 845
BstC8I GCNNGC 6 cut(s) 256, 320, 546, 575, 716, 921
BstDEI CTNAG 5 cut(s) 39, 401, 654, 1063, 1095
BstENI CCTNNNNNAGG 1 cut(s) 1062
BstF5I GGATG 1 cut(s) 534
BstFNI CGCG 1 cut(s) 320
BstHHI GCGC 3 cut(s) 320, 322, 662
BstKTI GATC 5 cut(s) 67, 103, 463, 559, 1114
BstMAI GTCTC 1 cut(s) 1010
BstMBI GATC 5 cut(s) 64, 100, 460, 556, 1111
BstMCI CGRYCG 1 cut(s) 67
BstNI CCWGG 2 cut(s) 519, 748
BstSCI CCNGG 3 cut(s) 274, 517, 746
BstSLI GKGCMC 1 cut(s) 1012
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 6 cut(s) 553, 851, 856, 859, 862, 865
BstX2I RGATCY 2 cut(s) 460, 1111
BstYI RGATCY 2 cut(s) 460, 1111
Bsu36I CCTNAGG 1 cut(s) 401
BsuRI GGCC 8 cut(s) 258, 407, 516, 522, 605, 698, 919, 1057
BtgZI GCGATG 2 cut(s) 13, 849
BtsCI GGATG 1 cut(s) 534
BtsI GCAGTG 2 cut(s) 127, 669
BtsIMutI CAGTG 5 cut(s) 65, 127, 662, 669, 901
Cac8I GCNNGC 6 cut(s) 256, 320, 546, 575, 716, 921
CfoI GCGC 3 cut(s) 320, 322, 662
Cfr10I RCCGGY 2 cut(s) 266, 580
Cfr13I GGNCC 7 cut(s) 257, 272, 349, 405, 515, 917, 1055
CseI GACGC 2 cut(s) 206, 365
Csp6I GTAC 1 cut(s) 951
CspCI CAANNNNNGTGG 2 cut(s) 877, 912
CviAII CATG 1 cut(s) 768
CviQI GTAC 1 cut(s) 951
DdeI CTNAG 5 cut(s) 39, 401, 654, 1063, 1095
DpnI GATC 5 cut(s) 66, 102, 462, 558, 1113
DpnII GATC 5 cut(s) 64, 100, 460, 556, 1111
Eam1104I CTCTTC 2 cut(s) 132, 245
EarI CTCTTC 2 cut(s) 132, 245
EciI GGCGGA 2 cut(s) 289, 462
Eco147I AGGCCT 2 cut(s) 522, 605
Eco47I GGWCC 2 cut(s) 272, 349
Eco57I CTGAAG 2 cut(s) 226, 450
Eco81I CCTNAGG 1 cut(s) 401
Eco88I CYCGRG 3 cut(s) 10, 524, 1013
EcoNI CCTNNNNNAGG 1 cut(s) 1062
EcoO109I RGGNCCY 2 cut(s) 257, 349
EcoRII CCWGG 2 cut(s) 517, 746
FaeI CATG 1 cut(s) 771
FaiI YATR 5 cut(s) 724, 762, 769, 813, 1083
FalI AAGNNNNNCTT 3 cut(s) 620, 652, 1098
FaqI GGGAC 1 cut(s) 322
FatI CATG 1 cut(s) 767
FauI CCCGC 2 cut(s) 268, 338
FokI GGATG 1 cut(s) 521
FspBI CTAG 2 cut(s) 1020, 1101
FspI TGCGCA 1 cut(s) 661
GlaI GCGC 3 cut(s) 319, 321, 661
GsaI CCCAGC 1 cut(s) 254
GsuI CTGGAG 2 cut(s) 202, 365
HaeIII GGCC 8 cut(s) 258, 407, 516, 522, 605, 698, 919, 1057
HapII CCGG 4 cut(s) 24, 267, 275, 581
HgaI GACGC 2 cut(s) 206, 365
HhaI GCGC 3 cut(s) 320, 322, 662
Hin1I GRCGYC 2 cut(s) 198, 357
Hin1II CATG 1 cut(s) 771
Hin6I GCGC 3 cut(s) 318, 320, 660
HinP1I GCGC 3 cut(s) 318, 320, 660
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HinfI GANTC 7 cut(s) 641, 647, 674, 803, 823, 937, 1091
HpaII CCGG 4 cut(s) 24, 267, 275, 581
HphI GGTGA 1 cut(s) 961
Hpy166II GTNNAC 3 cut(s) 928, 969, 1010
Hpy188I TCNGA 9 cut(s) 100, 105, 196, 646, 733, 808, 936, 1090, 1096
Hpy188III TCNNGA 3 cut(s) 347, 382, 1115
Hpy8I GTNNAC 3 cut(s) 928, 969, 1010
Hpy99I CGWCG 3 cut(s) 200, 293, 359
HpyAV CCTTC 8 cut(s) 96, 174, 187, 196, 217, 333, 370, 474
HpyCH4III ACNGT 2 cut(s) 73, 955
HpyCH4V TGCA 8 cut(s) 120, 394, 714, 760, 839, 848, 1010, 1037
HpyF3I CTNAG 5 cut(s) 39, 401, 654, 1063, 1095
Hsp92I GRCGYC 2 cut(s) 198, 357
Hsp92II CATG 1 cut(s) 771
HspAI GCGC 3 cut(s) 318, 320, 660
Kzo9I GATC 5 cut(s) 64, 100, 460, 556, 1111
Lsp1109I GCAGC 6 cut(s) 553, 851, 856, 859, 862, 865
LweI GCATC 3 cut(s) 36, 696, 826
MaeI CTAG 2 cut(s) 1020, 1101
MalI GATC 5 cut(s) 66, 102, 462, 558, 1113
MbiI CCGCTC 2 cut(s) 333, 961
MboI GATC 5 cut(s) 64, 100, 460, 556, 1111
MboII GAAGA 8 cut(s) 149, 172, 232, 502, 642, 734, 855, 1121
MflI RGATCY 2 cut(s) 460, 1111
MhlI GDGCHC 1 cut(s) 1012
MluCI AATT 4 cut(s) 106, 493, 755, 889
MlyI GAGTC 2 cut(s) 668, 946
MmeI TCCRAC 2 cut(s) 219, 732
MseI TTAA 1 cut(s) 492
MspA1I CMGCKG 3 cut(s) 222, 444, 923
MspI CCGG 4 cut(s) 24, 267, 275, 581
MspR9I CCNGG 3 cut(s) 276, 519, 748
MvaI CCWGG 2 cut(s) 519, 748
MvnI CGCG 1 cut(s) 320
NciI CCSGG 1 cut(s) 276
NdeII GATC 5 cut(s) 64, 100, 460, 556, 1111
NlaIII CATG 1 cut(s) 771
NlaIV GGNNCC 6 cut(s) 259, 351, 415, 462, 918, 945
NmeAIII GCCGAG 1 cut(s) 574
NsbI TGCGCA 1 cut(s) 661
PaeR7I CTCGAG 1 cut(s) 524
PalAI GGCGCGCC 1 cut(s) 318
PauI GCGCGC 1 cut(s) 318
PceI AGGCCT 2 cut(s) 522, 605
PfeI GAWTC 5 cut(s) 641, 647, 803, 823, 1091
PfoI TCCNGGA 1 cut(s) 274
Ple19I CGATCG 1 cut(s) 67
PleI GAGTC 2 cut(s) 668, 945
PpsI GAGTC 2 cut(s) 668, 945
PpuMI RGGWCCY 1 cut(s) 349
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 517, 746
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 2 cut(s) 517, 746
PspN4I GGNNCC 6 cut(s) 259, 351, 415, 462, 918, 945
PspPI GGNCC 7 cut(s) 257, 272, 349, 405, 515, 917, 1055
PspPPI RGGWCCY 1 cut(s) 349
PspXI VCTCGAGB 1 cut(s) 524
PsuI RGATCY 2 cut(s) 460, 1111
PteI GCGCGC 1 cut(s) 318
PvuI CGATCG 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 923
RgaI GCGATCGC 1 cut(s) 67
RsaI GTAC 1 cut(s) 952
RsaNI GTAC 1 cut(s) 951
SaqAI TTAA 1 cut(s) 492
Sau3AI GATC 5 cut(s) 64, 100, 460, 556, 1111
Sau96I GGNCC 7 cut(s) 257, 272, 349, 405, 515, 917, 1055
SchI GAGTC 2 cut(s) 668, 946
ScrFI CCNGG 3 cut(s) 276, 519, 748
SduI GDGCHC 1 cut(s) 1012
SetI ASST 9 cut(s) 45, 98, 152, 472, 546, 687, 925, 949, 968
SfaAI GCGATCGC 1 cut(s) 67
SfaNI GCATC 3 cut(s) 36, 696, 826
Sfr274I CTCGAG 1 cut(s) 524
SgfI GCGATCGC 1 cut(s) 67
SgrAI CRCCGGYG 1 cut(s) 266
SgsI GGCGCGCC 1 cut(s) 318
SinI GGWCC 2 cut(s) 272, 349
SlaI CTCGAG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SpeI ACTAGT 1 cut(s) 1019
Sse9I AATT 4 cut(s) 106, 493, 755, 889
SseBI AGGCCT 2 cut(s) 522, 605
SspMI CTAG 2 cut(s) 1020, 1101
StuI AGGCCT 2 cut(s) 522, 605
StyD4I CCNGG 3 cut(s) 274, 517, 746
TaaI ACNGT 2 cut(s) 73, 955
TaqI TCGA 4 cut(s) 135, 363, 525, 600
TasI AATT 4 cut(s) 106, 493, 755, 889
TauI GCSGC 7 cut(s) 18, 129, 225, 266, 447, 834, 884
TfiI GAWTC 5 cut(s) 641, 647, 803, 823, 1091
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 5 cut(s) 65, 127, 662, 669, 901
TseI GCWGC 6 cut(s) 541, 839, 869, 872, 875, 878
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 5 cut(s) 65, 127, 662, 669, 901
VneI GTGCAC 1 cut(s) 1008
VpaK11BI GGWCC 2 cut(s) 272, 349
XagI CCTNNNNNAGG 1 cut(s) 1062
XhoI CTCGAG 1 cut(s) 524
XspI CTAG 2 cut(s) 1020, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.