Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005310.1

Orthogroup ID

OG0009074

Physical Location & Seq

Genomic Coordinates Forward (+)

71402 .. 72529

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005310.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgtcgtcctcgggcggcaactccggcatcgcccccgctcagctgtacttttgccaccagtgcgatcgcaccgtttccctcaacccttcccctacctccgatctcaattgccctatttgcagcggcggcttcctcgaagagatggaaacctctaaccctaacccttcccccagtcccttcttctccttcccctccgacgcccctcccttctcctcctccagcggctttccctcctttctcttcagcaccgcagcaggccccgccgccggtggtcggggaaatcttggcgacgaactctccgccctcttcagtggtggcgcgccttcctcccgctcgtccccctttcaggaccccgacgccttcgacccctttgtgttcctccagaactatttgcaaaccctaagggccgatggtgccaatgttcagtttgtgattgataacagcggcggaggaggaggaggaggagtaggggatccttcagccttccgtgttcccaccaatcttaattttggagattacttcttcggcccaggcctcgagcaactcatccagcagcttgccgagaatgatccaaaccgctacggcacgccaccggcttcaaagtccgccatcgaggccttgccagttgtgaaaatctcaaaggaactcttggattctgattcttctcagtgcgcagtgtgtaaggactcgtttgagcttggggaggaggccaagcagatgccctgcaagcacttataccattctgattgtattcttccctggttggaattgcataactcatgccctgtttgtcgccacgagttgccaaccgatgattcagagtacgagcagaggattcgtggcggcgacgcagccaatgcaaatacaactcaatcttctgctgctgccgccaacaattccagtggtgttggtgggagtagggggccagctgttgacattcagagtcaggcaccacgtacagttgagcggaggttcaccatttccttgcctcgcctttttagggtatttggtggtgcacccgagactagtaatactgggagtgcaagtggaaacaatgatgggcctaactcagggaataggggaagccgtaactcggaatctgagcctagacaagaagatcttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

375

Amino Acids

39.42

Weight (kDa)

4.58

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50350 AT3G19950 AT3G19950 AT3G19950
fragaria_vesca	FvH4_5g18350
malus_domestica	MD06G1239200.v1.1 MD14G1245300.v1.1
prunus_persica	Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1
pyrus_communis	pycom14g20630
rosa_chinensis	RchiOBHm_Chr7g0177241
rosa_laevigata	RLG00000005553
rosa_multiflora	Rmu_co8390491.1_g000001 Rmu_sc0005310.1_g000014
rosa_roxburghii	Rroxscaffold_3G00276020
rosa_rugosa	Rorug06G0404100
rosa_samantha	Rh7AG004100 Rh7BG003900 Rh7CG003800 Rh7DG003800
rosa_wichuraiana	Rw7G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	673
AccB1I	GGYRCC	2 cut(s)	413, 949
AccBSI	CCGCTC	3 cut(s)	38, 333, 967
AccII	CGCG	1 cut(s)	320
AclWI	GGATC	3 cut(s)	467, 480, 563
AcuI	CTGAAG	3 cut(s)	226, 292, 462
AcyI	GRCGYC	2 cut(s)	198, 357
AfaI	GTAC	3 cut(s)	47, 824, 958
AfiI	CCNNNNNNNGG	6 cut(s)	266, 273, 346, 1000, 1070, 1093
AgsI	TTSAA	1 cut(s)	600
AhlI	ACTAGT	1 cut(s)	1025
AjnI	CCWGG	2 cut(s)	529, 758
AjuI	GAANNNNNNNTTGG	2 cut(s)	799, 831
AluBI	AGCT	4 cut(s)	43, 556, 697, 929
AluI	AGCT	4 cut(s)	43, 556, 697, 929
Alw21I	GWGCWC	1 cut(s)	1018
Alw26I	GTCTC	1 cut(s)	1016
Alw44I	GTGCAC	1 cut(s)	1014
AlwI	GGATC	3 cut(s)	467, 480, 563
Ama87I	CYCGRG	3 cut(s)	10, 536, 1019
AoxI	GGCC	8 cut(s)	256, 405, 526, 532, 615, 708, 923, 1061
ApaLI	GTGCAC	1 cut(s)	1014
ApeKI	GCWGC	6 cut(s)	120, 251, 553, 851, 881, 884
AscI	GGCGCGCC	1 cut(s)	318
AsiSI	GCGATCGC	1 cut(s)	67
AspLEI	GCGC	3 cut(s)	320, 322, 674
AspS9I	GGNCC	6 cut(s)	257, 349, 405, 527, 923, 1061
AsuHPI	GGTGA	1 cut(s)	967
AvaI	CYCGRG	3 cut(s)	10, 536, 1019
AvaII	GGWCC	1 cut(s)	349
AxyI	CCTNAGG	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	1018
BamHI	GGATCC	1 cut(s)	472
BanI	GGYRCC	2 cut(s)	413, 949
BauI	CACGAG	1 cut(s)	797
Bbv12I	GWGCWC	1 cut(s)	1018
BbvI	GCAGC	6 cut(s)	132, 263, 565, 863, 868, 871
BccI	CCATC	4 cut(s)	136, 404, 617, 1052
BceAI	ACGGC	2 cut(s)	598, 1071
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	2 cut(s)	531, 760
BcoDI	GTCTC	1 cut(s)	1016
BcuI	ACTAGT	1 cut(s)	1025
BfaI	CTAG	2 cut(s)	1026, 1107
BglI	GCCNNNNNGGC	1 cut(s)	614
BglII	AGATCT	1 cut(s)	1117
BlpI	GCTNAGC	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	531, 760
Bme18I	GGWCC	1 cut(s)	349
BmeT110I	CYCGRG	3 cut(s)	10, 536, 1019
BmgT120I	GGNCC	6 cut(s)	257, 349, 405, 527, 923, 1061
BmiI	GGNNCC	6 cut(s)	259, 351, 415, 474, 924, 951
BmrFI	CCNGG	2 cut(s)	531, 760
BmrI	ACTGGG	2 cut(s)	165, 1044
BmsI	GCATC	2 cut(s)	36, 708
BmuI	ACTGGG	2 cut(s)	165, 1044
BpmI	CTGGAG	2 cut(s)	202, 365
Bpu1102I	GCTNAGC	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	956
BsaHI	GRCGYC	2 cut(s)	198, 357
BsaJI	CCNNGG	3 cut(s)	9, 529, 758
BsaXI	ACNNNNNCTCC	6 cut(s)	281, 311, 450, 480, 1030, 1060
Bsc4I	CCNNNNNNNGG	6 cut(s)	266, 273, 346, 1000, 1070, 1093
Bse118I	RCCGGY	2 cut(s)	266, 592
Bse1I	ACTGG	5 cut(s)	58, 171, 623, 900, 1039
Bse21I	CCTNAGG	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	531, 760
BseDI	CCNNGG	3 cut(s)	9, 529, 758
BseGI	GGATG	1 cut(s)	546
BseLI	CCNNNNNNNGG	6 cut(s)	266, 273, 346, 1000, 1070, 1093
BseMII	CTCAG	4 cut(s)	53, 680, 1083, 1092
BseNI	ACTGG	5 cut(s)	58, 171, 623, 900, 1039
BsePI	GCGCGC	1 cut(s)	318
BseRI	GAGGAG	8 cut(s)	202, 205, 465, 468, 471, 474, 477, 719
BseSI	GKGCMC	1 cut(s)	1018
BseXI	GCAGC	6 cut(s)	132, 263, 565, 863, 868, 871
Bsh1236I	CGCG	1 cut(s)	320
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	8 cut(s)	258, 407, 528, 534, 617, 710, 925, 1063
BshNI	GGYRCC	2 cut(s)	413, 949
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	1018
BsiHKCI	CYCGRG	3 cut(s)	10, 536, 1019
BsiSI	CCGG	3 cut(s)	24, 267, 593
BslFI	GGGAC	2 cut(s)	159, 322
BslI	CCNNNNNNNGG	6 cut(s)	266, 273, 346, 1000, 1070, 1093
BsmAI	GTCTC	1 cut(s)	1016
BsmFI	GGGAC	2 cut(s)	159, 322
BsnI	GGCC	8 cut(s)	258, 407, 528, 534, 617, 710, 925, 1063
BsoBI	CYCGRG	3 cut(s)	10, 536, 1019
Bsp1286I	GDGCHC	1 cut(s)	1018
Bsp143I	GATC	5 cut(s)	64, 100, 472, 568, 1117
Bsp1720I	GCTNAGC	1 cut(s)	39
BspANI	GGCC	8 cut(s)	258, 407, 528, 534, 617, 710, 925, 1063
BspCNI	CTCAG	4 cut(s)	52, 679, 1082, 1093
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	6 cut(s)	259, 351, 415, 474, 924, 951
BspPI	GGATC	3 cut(s)	467, 480, 563
BspT107I	GGYRCC	2 cut(s)	413, 949
BsrBI	CCGCTC	3 cut(s)	38, 333, 967
BsrFI	RCCGGY	2 cut(s)	266, 592
BsrI	ACTGG	5 cut(s)	58, 171, 623, 900, 1039
BssAI	RCCGGY	2 cut(s)	266, 592
BssECI	CCNNGG	3 cut(s)	9, 529, 758
BssHII	GCGCGC	1 cut(s)	318
BssMI	GATC	5 cut(s)	64, 100, 472, 568, 1117
BssNI	GRCGYC	2 cut(s)	198, 357
BssSI	CACGAG	1 cut(s)	797
Bst2BI	CACGAG	1 cut(s)	797
Bst2UI	CCWGG	2 cut(s)	531, 760
Bst4CI	ACNGT	2 cut(s)	73, 961
Bst6I	CTCTTC	3 cut(s)	132, 245, 311
BstACI	GRCGYC	2 cut(s)	198, 357
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstBAI	YACGTR	1 cut(s)	956
BstC8I	GCNNGC	6 cut(s)	256, 320, 558, 587, 728, 927
BstDEI	CTNAG	5 cut(s)	39, 401, 666, 1069, 1101
BstENI	CCTNNNNNAGG	1 cut(s)	1068
BstF5I	GGATG	1 cut(s)	546
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	3 cut(s)	320, 322, 674
BstKTI	GATC	5 cut(s)	67, 103, 475, 571, 1120
BstMAI	GTCTC	1 cut(s)	1016
BstMBI	GATC	5 cut(s)	64, 100, 472, 568, 1117
BstMCI	CGRYCG	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	531, 760
BstSCI	CCNGG	2 cut(s)	529, 758
BstSLI	GKGCMC	1 cut(s)	1018
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	6 cut(s)	132, 263, 565, 863, 868, 871
BstX2I	RGATCY	2 cut(s)	472, 1117
BstYI	RGATCY	2 cut(s)	472, 1117
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	8 cut(s)	258, 407, 528, 534, 617, 710, 925, 1063
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	546
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	5 cut(s)	65, 316, 674, 681, 907
Cac8I	GCNNGC	6 cut(s)	256, 320, 558, 587, 728, 927
CfoI	GCGC	3 cut(s)	320, 322, 674
Cfr10I	RCCGGY	2 cut(s)	266, 592
Cfr13I	GGNCC	6 cut(s)	257, 349, 405, 527, 923, 1061
CseI	GACGC	3 cut(s)	206, 365, 857
Csp6I	GTAC	3 cut(s)	46, 823, 957
CspCI	CAANNNNNGTGG	2 cut(s)	883, 918
CviAII	CATG	1 cut(s)	780
CviQI	GTAC	3 cut(s)	46, 823, 957
DdeI	CTNAG	5 cut(s)	39, 401, 666, 1069, 1101
DpnI	GATC	5 cut(s)	66, 102, 474, 570, 1119
DpnII	GATC	5 cut(s)	64, 100, 472, 568, 1117
Eam1104I	CTCTTC	3 cut(s)	132, 245, 311
EarI	CTCTTC	3 cut(s)	132, 245, 311
EciI	GGCGGA	3 cut(s)	289, 462, 595
Eco147I	AGGCCT	2 cut(s)	534, 617
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	3 cut(s)	226, 292, 462
Eco81I	CCTNAGG	1 cut(s)	401
Eco88I	CYCGRG	3 cut(s)	10, 536, 1019
EcoNI	CCTNNNNNAGG	1 cut(s)	1068
EcoO109I	RGGNCCY	2 cut(s)	257, 349
EcoRII	CCWGG	2 cut(s)	529, 758
FaeI	CATG	1 cut(s)	783
FaiI	YATR	3 cut(s)	736, 774, 781
FalI	AAGNNNNNCTT	3 cut(s)	632, 664, 1104
FaqI	GGGAC	2 cut(s)	159, 322
FatI	CATG	1 cut(s)	779
FauI	CCCGC	3 cut(s)	43, 268, 338
FokI	GGATG	1 cut(s)	533
FspBI	CTAG	2 cut(s)	1026, 1107
FspI	TGCGCA	1 cut(s)	673
GlaI	GCGC	3 cut(s)	319, 321, 673
GsuI	CTGGAG	2 cut(s)	202, 365
HaeIII	GGCC	8 cut(s)	258, 407, 528, 534, 617, 710, 925, 1063
HapII	CCGG	3 cut(s)	24, 267, 593
HgaI	GACGC	3 cut(s)	206, 365, 857
HhaI	GCGC	3 cut(s)	320, 322, 674
Hin1I	GRCGYC	2 cut(s)	198, 357
Hin1II	CATG	1 cut(s)	783
Hin6I	GCGC	3 cut(s)	318, 320, 672
HinP1I	GCGC	3 cut(s)	318, 320, 672
HincII	GTYRAC	1 cut(s)	934
HindII	GTYRAC	1 cut(s)	934
HinfI	GANTC	7 cut(s)	653, 659, 686, 815, 835, 943, 1097
HpaII	CCGG	3 cut(s)	24, 267, 593
HphI	GGTGA	1 cut(s)	967
Hpy166II	GTNNAC	3 cut(s)	934, 975, 1016
Hpy188I	TCNGA	8 cut(s)	100, 196, 658, 745, 820, 942, 1096, 1102
Hpy188III	TCNNGA	3 cut(s)	347, 382, 1121
Hpy8I	GTNNAC	3 cut(s)	934, 975, 1016
Hpy99I	CGWCG	4 cut(s)	200, 293, 359, 851
HpyAV	CCTTC	9 cut(s)	96, 174, 187, 196, 217, 333, 370, 486, 493
HpyCH4III	ACNGT	2 cut(s)	73, 961
HpyCH4IV	ACGT	1 cut(s)	955
HpyCH4V	TGCA	7 cut(s)	120, 394, 726, 772, 860, 1016, 1043
HpyF3I	CTNAG	5 cut(s)	39, 401, 666, 1069, 1101
HpySE526I	ACGT	1 cut(s)	955
Hsp92I	GRCGYC	2 cut(s)	198, 357
Hsp92II	CATG	1 cut(s)	783
HspAI	GCGC	3 cut(s)	318, 320, 672
Kzo9I	GATC	5 cut(s)	64, 100, 472, 568, 1117
Lsp1109I	GCAGC	6 cut(s)	132, 263, 565, 863, 868, 871
LweI	GCATC	2 cut(s)	36, 708
MaeI	CTAG	2 cut(s)	1026, 1107
MaeII	ACGT	1 cut(s)	955
MaeIII	GTNAC	1 cut(s)	1088
MalI	GATC	5 cut(s)	66, 102, 474, 570, 1119
MbiI	CCGCTC	3 cut(s)	38, 333, 967
MboI	GATC	5 cut(s)	64, 100, 472, 568, 1117
MboII	GAAGA	9 cut(s)	149, 172, 232, 298, 514, 654, 746, 867, 1127
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	2 cut(s)	472, 1117
MhlI	GDGCHC	1 cut(s)	1018
MluCI	AATT	4 cut(s)	106, 505, 767, 895
MlyI	GAGTC	2 cut(s)	680, 952
MmeI	TCCRAC	2 cut(s)	219, 744
MseI	TTAA	1 cut(s)	504
MspA1I	CMGCKG	5 cut(s)	43, 123, 222, 444, 929
MspI	CCGG	3 cut(s)	24, 267, 593
MspR9I	CCNGG	2 cut(s)	531, 760
MunI	CAATTG	1 cut(s)	106
MvaI	CCWGG	2 cut(s)	531, 760
MvnI	CGCG	1 cut(s)	320
NdeII	GATC	5 cut(s)	64, 100, 472, 568, 1117
NlaIII	CATG	1 cut(s)	783
NlaIV	GGNNCC	6 cut(s)	259, 351, 415, 474, 924, 951
NmeAIII	GCCGAG	1 cut(s)	586
NsbI	TGCGCA	1 cut(s)	673
PaeR7I	CTCGAG	1 cut(s)	536
PalAI	GGCGCGCC	1 cut(s)	318
PauI	GCGCGC	1 cut(s)	318
PceI	AGGCCT	2 cut(s)	534, 617
PfeI	GAWTC	5 cut(s)	653, 659, 815, 835, 1097
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	2 cut(s)	680, 951
PpsI	GAGTC	2 cut(s)	680, 951
Ppu21I	YACGTR	1 cut(s)	956
PpuMI	RGGWCCY	1 cut(s)	349
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	529, 758
PspGI	CCWGG	2 cut(s)	529, 758
PspN4I	GGNNCC	6 cut(s)	259, 351, 415, 474, 924, 951
PspPI	GGNCC	6 cut(s)	257, 349, 405, 527, 923, 1061
PspPPI	RGGWCCY	1 cut(s)	349
PspXI	VCTCGAGB	1 cut(s)	536
PsuI	RGATCY	2 cut(s)	472, 1117
PteI	GCGCGC	1 cut(s)	318
PvuI	CGATCG	1 cut(s)	67
PvuII	CAGCTG	2 cut(s)	43, 929
RgaI	GCGATCGC	1 cut(s)	67
RsaI	GTAC	3 cut(s)	47, 824, 958
RsaNI	GTAC	3 cut(s)	46, 823, 957
SaqAI	TTAA	1 cut(s)	504
Sau3AI	GATC	5 cut(s)	64, 100, 472, 568, 1117
Sau96I	GGNCC	6 cut(s)	257, 349, 405, 527, 923, 1061
SchI	GAGTC	2 cut(s)	680, 952
ScrFI	CCNGG	2 cut(s)	531, 760
SduI	GDGCHC	1 cut(s)	1018
SetI	ASST	8 cut(s)	45, 98, 152, 558, 699, 931, 958, 974
SfaAI	GCGATCGC	1 cut(s)	67
SfaNI	GCATC	2 cut(s)	36, 708
Sfr274I	CTCGAG	1 cut(s)	536
SgfI	GCGATCGC	1 cut(s)	67
SgrAI	CRCCGGYG	1 cut(s)	266
SgsI	GGCGCGCC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	349
SlaI	CTCGAG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SpeI	ACTAGT	1 cut(s)	1025
Sse9I	AATT	4 cut(s)	106, 505, 767, 895
SseBI	AGGCCT	2 cut(s)	534, 617
SspMI	CTAG	2 cut(s)	1026, 1107
StuI	AGGCCT	2 cut(s)	534, 617
StyD4I	CCNGG	2 cut(s)	529, 758
TaaI	ACNGT	2 cut(s)	73, 961
TaiI	ACGT	1 cut(s)	958
TaqI	TCGA	4 cut(s)	135, 363, 537, 612
TasI	AATT	4 cut(s)	106, 505, 767, 895
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	8 cut(s)	18, 126, 129, 225, 266, 447, 846, 890
TfiI	GAWTC	5 cut(s)	653, 659, 815, 835, 1097
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	5 cut(s)	65, 316, 674, 681, 907
TseI	GCWGC	6 cut(s)	120, 251, 553, 851, 881, 884
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	5 cut(s)	65, 316, 674, 681, 907
VneI	GTGCAC	1 cut(s)	1014
VpaK11BI	GGWCC	1 cut(s)	349
XagI	CCTNNNNNAGG	1 cut(s)	1068
XhoI	CTCGAG	1 cut(s)	536
XspI	CTAG	2 cut(s)	1026, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.