FvH4_5g18350

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
10547665 .. 10550894
3230 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18350.t1

Sequence Viewer

Length: 1140 bp
ATGTCGTCCTCGGGCGGCAATTCCGGCGTCGCCGCTCCTCCTCCTCCTTCCCCGCTTTACTTCTGCCACCAGTGCGATCGCACCGTAACCCTCAACCCTTCCCCTACCTCCGATCTCGCTTGCCCTGTCTGCAGTGGCGGCTTCCTCGAAGAGATGGAATCCTCTAACCCTAACCCTATCCCCAATCCCTTCTTCCCCTCCGACGGCCCTCCCTTCCCCTCCGCCGGCTTCCCCACCTTCCTCTTCGGCGCCCCTACCGCCGCCGCCGGGCCGCGAAACCTCGCCGAGGATCTCTCCGCCATCCTCGGCGGCGCCGGCTCCCGCTCTACCTCCCGCGCTTCGCCGTTTCACGACCCCGACGCCTTCGACCCCTTCAGGTTCCTCGAGAGCTATCTGCAAGGCCTGAGGGCCGACGGCGCCAATGTTCAGTTTGTGATTGATCACACCGGCGGCGACGGAGGTAGGGATTTCTCAGGCTTTCCTACCAATGTCAATTTGGGAGATTACTTCTTCGGCCCAGGGCTGGAGCAACTCATCCAGCAGCTCGCTGAGAATGATCCGAACCGCTACGGCACGCCGCCGGCTTCGAAGTCCGCCGTGGAGGCCTTGCCAGTTGTGAAAATCACACAGGAGCTCTTGGATTCCGACTCTTCGCAGTGCGCGGTGTGTAAGGACTCGTTTGAGCTTGATGAGGAGGCCAAGCAGATGCCCTGCAAGCACATTTACCATTCGGATTGTATTCTTCCCTGGTTGGAGTTGCACAACTCGTGCCCTGTTTGCCGCCACGAGTTGCCCACTGATGATTCAGAGTATGAGCAGAGGGTTCGTGGCGGCGGAGGCGATGCGGCCAATGCAAATAGCACTCAGTATGCTGCTGGTGTTGGTGGAGCCAACAACTCTGGTGGTGTTGGTGGGAGTAGGGGGCAAGCTGTTGACATTCAGGGTCAGGCACCACGTACAGTTGAGCGGAGGTTTACCATCTCCTTGCCTCGCCTTTTTAGGGTATTTGGTGGCGCACCCGAGGCTGGTAATGCTGGGAGTGGAAGTGGAAGTGGAAGTGGAACCAATGATGGGCCTAACTCAGGGAACAGGGGAAGTCAAAACTCTGGAGCAGAGCCTAGACAAGAAGATCTTGATTGA

Protein Analysis

380

Amino Acids

39.57

Weight (kDa)

4.6

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_19 PF14369 19 - 52 1.9e-14 zinc-ribbon
zf-RING_2 PF13639 219 - 261 3.7e-13 Ring finger domain
zf-C3HC4_2 PF13923 219 - 260 1.9e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 219 - 247 2.2e-07 RING-like zinc finger
zf-C3HC4 PF00097 220 - 260 4.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 220 - 261 9e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 248, 311, 416, 949
AccBSI CCGCTC 3 cut(s) 35, 324, 967
AccII CGCG 3 cut(s) 274, 336, 662
AclWI GGATC 2 cut(s) 297, 551
AcoI YGGCCR 1 cut(s) 846
AcuI CTGAAG 1 cut(s) 358
AcyI GRCGYC 5 cut(s) 27, 249, 312, 360, 417
AfaI GTAC 1 cut(s) 958
AfiI CCNNNNNNNGG 9 cut(s) 203, 224, 267, 286, 523, 1000, 1025, 1071, 1082
AjnI CCWGG 2 cut(s) 517, 746
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 5 cut(s) 390, 544, 634, 685, 929
AluI AGCT 5 cut(s) 390, 544, 634, 685, 929
Alw21I GWGCWC 1 cut(s) 636
AlwI GGATC 2 cut(s) 297, 551
Ama87I CYCGRG 3 cut(s) 10, 383, 1019
AoxI GGCC 9 cut(s) 205, 269, 400, 408, 514, 603, 696, 846, 1073
ApeKI GCWGC 2 cut(s) 541, 872
AsiSI GCGATCGC 1 cut(s) 79
AspLEI GCGC 6 cut(s) 251, 314, 338, 419, 662, 1016
AspS9I GGNCC 5 cut(s) 206, 269, 408, 515, 1073
AsuC2I CCSGG 1 cut(s) 268
AsuII TTCGAA 1 cut(s) 587
AvaI CYCGRG 3 cut(s) 10, 383, 1019
AxyI CCTNAGG 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 773
BanI GGYRCC 4 cut(s) 248, 311, 416, 949
BanII GRGCYC 1 cut(s) 636
BauI CACGAG 2 cut(s) 766, 785
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 2 cut(s) 553, 859
BccI CCATC 4 cut(s) 148, 308, 986, 1064
BceAI ACGGC 5 cut(s) 220, 328, 430, 581, 586
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 2 cut(s) 519, 748
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 268
BfaI CTAG 1 cut(s) 1119
BfmI CTRYAG 1 cut(s) 130
BfoI RGCGCY 3 cut(s) 252, 315, 420
BglI GCCNNNNNGGC 1 cut(s) 602
BglII AGATCT 1 cut(s) 1129
Bme1390I CCNGG 3 cut(s) 268, 519, 748
BmeT110I CYCGRG 3 cut(s) 10, 383, 1019
BmgT120I GGNCC 5 cut(s) 206, 269, 408, 515, 1073
BmiI GGNNCC 8 cut(s) 250, 313, 319, 380, 418, 889, 951, 1063
BmrFI CCNGG 3 cut(s) 268, 519, 748
BmsI GCATC 2 cut(s) 696, 832
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpmI CTGGAG 2 cut(s) 545, 1128
Bpu14I TTCGAA 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 956
BsaHI GRCGYC 5 cut(s) 27, 249, 312, 360, 417
BsaJI CCNNGG 8 cut(s) 9, 285, 304, 517, 518, 597, 746, 1020
BsaXI ACNNNNNCTCC 2 cut(s) 1030, 1060
Bsc4I CCNNNNNNNGG 9 cut(s) 203, 224, 267, 286, 523, 1000, 1025, 1071, 1082
Bse118I RCCGGY 4 cut(s) 224, 314, 446, 580
Bse1I ACTGG 2 cut(s) 70, 611
Bse21I CCTNAGG 1 cut(s) 404
BseBI CCWGG 2 cut(s) 519, 748
BseDI CCNNGG 8 cut(s) 9, 285, 304, 517, 518, 597, 746, 1020
BseGI GGATG 2 cut(s) 300, 534
BseLI CCNNNNNNNGG 9 cut(s) 203, 224, 267, 286, 523, 1000, 1025, 1071, 1082
BseMII CTCAG 5 cut(s) 395, 486, 540, 878, 1095
BseNI ACTGG 2 cut(s) 70, 611
BseRI GAGGAG 4 cut(s) 27, 30, 33, 707
BseSI GKGCMC 1 cut(s) 773
BseXI GCAGC 2 cut(s) 553, 859
BseYI CCCAGC 1 cut(s) 1034
Bsh1236I CGCG 3 cut(s) 274, 336, 662
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 9 cut(s) 207, 271, 402, 410, 516, 605, 698, 848, 1075
BshNI GGYRCC 4 cut(s) 248, 311, 416, 949
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 636
BsiHKCI CYCGRG 3 cut(s) 10, 383, 1019
BsiSI CCGG 6 cut(s) 24, 225, 267, 315, 447, 581
BslI CCNNNNNNNGG 9 cut(s) 203, 224, 267, 286, 523, 1000, 1025, 1071, 1082
BsnI GGCC 9 cut(s) 207, 271, 402, 410, 516, 605, 698, 848, 1075
BsoBI CYCGRG 3 cut(s) 10, 383, 1019
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 2 cut(s) 636, 773
Bsp143I GATC 6 cut(s) 76, 112, 289, 439, 556, 1129
BspANI GGCC 9 cut(s) 207, 271, 402, 410, 516, 605, 698, 848, 1075
BspCNI CTCAG 5 cut(s) 396, 485, 541, 877, 1094
BspFNI CGCG 3 cut(s) 274, 336, 662
BspLI GGNNCC 8 cut(s) 250, 313, 319, 380, 418, 889, 951, 1063
BspMAI CTGCAG 1 cut(s) 134
BspPI GGATC 2 cut(s) 297, 551
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 4 cut(s) 248, 311, 416, 949
BsrBI CCGCTC 3 cut(s) 35, 324, 967
BsrFI RCCGGY 4 cut(s) 224, 314, 446, 580
BsrI ACTGG 2 cut(s) 70, 611
BssAI RCCGGY 4 cut(s) 224, 314, 446, 580
BssECI CCNNGG 8 cut(s) 9, 285, 304, 517, 518, 597, 746, 1020
BssMI GATC 6 cut(s) 76, 112, 289, 439, 556, 1129
BssNI GRCGYC 5 cut(s) 27, 249, 312, 360, 417
BssSI CACGAG 2 cut(s) 766, 785
Bst2BI CACGAG 2 cut(s) 766, 785
Bst2UI CCWGG 2 cut(s) 519, 748
Bst4CI ACNGT 2 cut(s) 85, 961
Bst6I CTCTTC 3 cut(s) 144, 248, 655
BstACI GRCGYC 5 cut(s) 27, 249, 312, 360, 417
BstBAI YACGTR 1 cut(s) 956
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 8 cut(s) 121, 226, 316, 546, 575, 582, 716, 927
BstDEI CTNAG 5 cut(s) 404, 472, 549, 864, 1081
BstDSI CCRYGG 1 cut(s) 597
BstENI CCTNNNNNAGG 2 cut(s) 284, 1080
BstF5I GGATG 2 cut(s) 300, 534
BstFNI CGCG 3 cut(s) 274, 336, 662
BstH2I RGCGCY 3 cut(s) 252, 315, 420
BstHHI GCGC 6 cut(s) 251, 314, 338, 419, 662, 1016
BstKTI GATC 6 cut(s) 79, 115, 292, 442, 559, 1132
BstMBI GATC 6 cut(s) 76, 112, 289, 439, 556, 1129
BstMCI CGRYCG 1 cut(s) 79
BstNI CCWGG 2 cut(s) 519, 748
BstSCI CCNGG 3 cut(s) 266, 517, 746
BstSFI CTRYAG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 773
BstUI CGCG 3 cut(s) 274, 336, 662
BstV1I GCAGC 2 cut(s) 553, 859
BstX2I RGATCY 2 cut(s) 289, 1129
BstYI RGATCY 2 cut(s) 289, 1129
Bsu36I CCTNAGG 1 cut(s) 404
BsuRI GGCC 9 cut(s) 207, 271, 402, 410, 516, 605, 698, 848, 1075
BtgI CCRYGG 1 cut(s) 597
BtgZI GCGATG 1 cut(s) 855
BtsCI GGATG 2 cut(s) 300, 534
BtsI GCAGTG 2 cut(s) 139, 662
BtsIMutI CAGTG 4 cut(s) 77, 139, 662, 795
Cac8I GCNNGC 8 cut(s) 121, 226, 316, 546, 575, 582, 716, 927
CfoI GCGC 6 cut(s) 251, 314, 338, 419, 662, 1016
Cfr10I RCCGGY 4 cut(s) 224, 314, 446, 580
Cfr13I GGNCC 5 cut(s) 206, 269, 408, 515, 1073
CseI GACGC 2 cut(s) 16, 368
Csp6I GTAC 1 cut(s) 957
CspCI CAANNNNNGTGG 2 cut(s) 883, 918
CviQI GTAC 1 cut(s) 957
DdeI CTNAG 5 cut(s) 404, 472, 549, 864, 1081
DinI GGCGCC 3 cut(s) 250, 313, 418
DpnI GATC 6 cut(s) 78, 114, 291, 441, 558, 1131
DpnII GATC 6 cut(s) 76, 112, 289, 439, 556, 1129
EaeI YGGCCR 1 cut(s) 846
Eam1104I CTCTTC 3 cut(s) 144, 248, 655
EarI CTCTTC 3 cut(s) 144, 248, 655
EciI GGCGGA 4 cut(s) 211, 286, 583, 849
Ecl136II GAGCTC 1 cut(s) 634
Eco147I AGGCCT 2 cut(s) 402, 605
Eco24I GRGCYC 1 cut(s) 636
Eco53kI GAGCTC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 358
Eco81I CCTNAGG 1 cut(s) 404
Eco88I CYCGRG 3 cut(s) 10, 383, 1019
EcoICRI GAGCTC 1 cut(s) 634
EcoNI CCTNNNNNAGG 2 cut(s) 284, 1080
EcoRII CCWGG 2 cut(s) 517, 746
EcoT38I GRGCYC 1 cut(s) 636
EgeI GGCGCC 3 cut(s) 250, 313, 418
EheI GGCGCC 3 cut(s) 250, 313, 418
FaiI YATR 2 cut(s) 813, 870
FalI AAGNNNNNCTT 1 cut(s) 1116
FauI CCCGC 3 cut(s) 60, 329, 341
FbaI TGATCA 1 cut(s) 439
FokI GGATG 2 cut(s) 287, 521
FriOI GRGCYC 1 cut(s) 636
FspBI CTAG 1 cut(s) 1119
GlaI GCGC 6 cut(s) 250, 313, 337, 418, 661, 1015
GsaI CCCAGC 1 cut(s) 1038
GsuI CTGGAG 2 cut(s) 545, 1128
HaeII RGCGCY 3 cut(s) 252, 315, 420
HaeIII GGCC 9 cut(s) 207, 271, 402, 410, 516, 605, 698, 848, 1075
HapII CCGG 6 cut(s) 24, 225, 267, 315, 447, 581
HgaI GACGC 2 cut(s) 16, 368
HhaI GCGC 6 cut(s) 251, 314, 338, 419, 662, 1016
Hin1I GRCGYC 5 cut(s) 27, 249, 312, 360, 417
Hin6I GCGC 6 cut(s) 249, 312, 336, 417, 660, 1014
HinP1I GCGC 6 cut(s) 249, 312, 336, 417, 660, 1014
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HinfI GANTC 5 cut(s) 158, 641, 647, 674, 803
HpaII CCGG 6 cut(s) 24, 225, 267, 315, 447, 581
Hpy166II GTNNAC 2 cut(s) 934, 975
Hpy188I TCNGA 6 cut(s) 112, 202, 561, 646, 733, 808
Hpy188III TCNNGA 4 cut(s) 350, 385, 1107, 1133
Hpy8I GTNNAC 2 cut(s) 934, 975
Hpy99I CGWCG 5 cut(s) 32, 206, 362, 416, 458
HpyAV CCTTC 7 cut(s) 57, 108, 199, 223, 247, 373, 382
HpyCH4III ACNGT 2 cut(s) 85, 961
HpyCH4IV ACGT 1 cut(s) 955
HpyCH4V TGCA 5 cut(s) 132, 397, 714, 760, 854
HpyF3I CTNAG 5 cut(s) 404, 472, 549, 864, 1081
HpySE526I ACGT 1 cut(s) 955
Hsp92I GRCGYC 5 cut(s) 27, 249, 312, 360, 417
HspAI GCGC 6 cut(s) 249, 312, 336, 417, 660, 1014
KasI GGCGCC 3 cut(s) 248, 311, 416
KroI GCCGGC 3 cut(s) 224, 314, 580
KroNI GCCGGC 3 cut(s) 226, 316, 582
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 6 cut(s) 76, 112, 289, 439, 556, 1129
LmnI GCTCC 6 cut(s) 40, 323, 526, 631, 887, 1109
Lsp1109I GCAGC 2 cut(s) 553, 859
LweI GCATC 2 cut(s) 696, 832
MaeI CTAG 1 cut(s) 1119
MaeII ACGT 1 cut(s) 955
MaeIII GTNAC 1 cut(s) 85
MalI GATC 6 cut(s) 78, 114, 291, 441, 558, 1131
MbiI CCGCTC 3 cut(s) 35, 324, 967
MboI GATC 6 cut(s) 76, 112, 289, 439, 556, 1129
MboII GAAGA 7 cut(s) 161, 184, 235, 502, 642, 734, 1139
MflI RGATCY 2 cut(s) 289, 1129
MhlI GDGCHC 2 cut(s) 636, 773
MluCI AATT 2 cut(s) 19, 493
Mly113I GGCGCC 3 cut(s) 249, 312, 417
MlyI GAGTC 2 cut(s) 641, 668
MmeI TCCRAC 3 cut(s) 225, 669, 732
MroNI GCCGGC 3 cut(s) 224, 314, 580
MspI CCGG 6 cut(s) 24, 225, 267, 315, 447, 581
MspR9I CCNGG 3 cut(s) 268, 519, 748
MvaI CCWGG 2 cut(s) 519, 748
MvnI CGCG 3 cut(s) 274, 336, 662
NaeI GCCGGC 3 cut(s) 226, 316, 582
NarI GGCGCC 3 cut(s) 249, 312, 417
NciI CCSGG 1 cut(s) 268
NdeII GATC 6 cut(s) 76, 112, 289, 439, 556, 1129
NgoMIV GCCGGC 3 cut(s) 224, 314, 580
NlaIV GGNNCC 8 cut(s) 250, 313, 319, 380, 418, 889, 951, 1063
NmeAIII GCCGAG 2 cut(s) 285, 310
NspV TTCGAA 1 cut(s) 587
PaeR7I CTCGAG 1 cut(s) 383
PasI CCCWGGG 1 cut(s) 518
PceI AGGCCT 2 cut(s) 402, 605
PdiI GCCGGC 3 cut(s) 226, 316, 582
PfeI GAWTC 3 cut(s) 158, 641, 803
Ple19I CGATCG 1 cut(s) 79
PleI GAGTC 2 cut(s) 641, 668
PluTI GGCGCC 3 cut(s) 252, 315, 420
PpsI GAGTC 2 cut(s) 641, 668
Ppu21I YACGTR 1 cut(s) 956
Psp124BI GAGCTC 1 cut(s) 636
Psp6I CCWGG 2 cut(s) 517, 746
PspFI CCCAGC 1 cut(s) 1034
PspGI CCWGG 2 cut(s) 517, 746
PspN4I GGNNCC 8 cut(s) 250, 313, 319, 380, 418, 889, 951, 1063
PspPI GGNCC 5 cut(s) 206, 269, 408, 515, 1073
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 289, 1129
PvuI CGATCG 1 cut(s) 79
RgaI GCGATCGC 1 cut(s) 79
RsaI GTAC 1 cut(s) 958
RsaNI GTAC 1 cut(s) 957
SacI GAGCTC 1 cut(s) 636
Sau3AI GATC 6 cut(s) 76, 112, 289, 439, 556, 1129
Sau96I GGNCC 5 cut(s) 206, 269, 408, 515, 1073
SchI GAGTC 2 cut(s) 641, 668
ScrFI CCNGG 3 cut(s) 268, 519, 748
SduI GDGCHC 2 cut(s) 636, 773
SfaAI GCGATCGC 1 cut(s) 79
SfaNI GCATC 2 cut(s) 696, 832
SfcI CTRYAG 1 cut(s) 130
SfoI GGCGCC 3 cut(s) 250, 313, 418
Sfr274I CTCGAG 1 cut(s) 383
SfuI TTCGAA 1 cut(s) 587
SgfI GCGATCGC 1 cut(s) 79
SgrAI CRCCGGYG 1 cut(s) 446
SlaI CTCGAG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 2 cut(s) 19, 493
SseBI AGGCCT 2 cut(s) 402, 605
SspDI GGCGCC 3 cut(s) 248, 311, 416
SspMI CTAG 1 cut(s) 1119
SstI GAGCTC 1 cut(s) 636
StuI AGGCCT 2 cut(s) 402, 605
StyD4I CCNGG 3 cut(s) 266, 517, 746
TaaI ACNGT 2 cut(s) 85, 961
TaiI ACGT 1 cut(s) 958
TaqI TCGA 4 cut(s) 147, 366, 384, 587
TasI AATT 2 cut(s) 19, 493
TfiI GAWTC 3 cut(s) 158, 641, 803
TscAI CASTG 4 cut(s) 77, 139, 662, 802
TseI GCWGC 2 cut(s) 541, 872
TspGWI ACGGA 1 cut(s) 471
TspRI CASTG 4 cut(s) 77, 139, 662, 802
XagI CCTNNNNNAGG 2 cut(s) 284, 1080
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XhoI CTCGAG 1 cut(s) 383
XspI CTAG 1 cut(s) 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.