Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009074

Physical Location & Seq

Genomic Coordinates Forward (+)

68496388 .. 68499335

Gene Structure 2948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTCGTCCTTGCGCGGCAACTCCGGCATCGCCCCCTCTCAGCTGTACTTTTGCCACCAGTGCGATCGCACCGTTTCCCTCAACCCTTCCCCTACCTCCGATCTCAATTGCCCTATTTGCACTGGCGGCTTCCTCGAAGAGATGGAAACCCCCAACCGTAACCCTAACCCTAACCCTACCCCCAATCCCTTCTTCTCCTTCCCCTCCGACGCCCCTTCCTTCGCCTCCAGCGGCTTTCCCTCCTTTCTCTTCAGCACCCCAGCAGGCCCCGCCGCCGGTGGTCCGGGAAATCTTGGCGACGAATTCTCCGCCCTCCTCGGTGGTGGCGCGCCTTCCCGCTCGTCCCCCTTTCAGGACCCCGACGCCTTCGACCCCTTTGTGTTCCTCCAGAACTATTTGCAAACCCTAAGGGCCAACGGTGCCAATGTTCAGTTTGTGATTGATAACAGCGGCGGCGGAGGAGGGGATCCTTCAGGCTTCCGTGTTCCCACCAATCTTAATTTTGGAGATTACTTCTTCGGCCCAGGCCTCGAGCAACTCATCCAGCAGCTTGCCGAGAATGATCCAAACCGCTACGGCACGCCACCGGCTTCAAAGTCTGCCATCGAGGCCTTGCCAGTTGTGAAAATCTCAAAGGAACTCTTGGATTCTGATTCTTCTCAGTGCGCAGTGTGTAAGGACTCGTTTGAGCTTGGGGAGGACGCCAAGCAGATGCCCTGCAAGCACTTATACCATTCTGATTGTATTCTTCCCTGGTTGGAATTGCATAACTCATGCCCTGTTTGTCGCCACGAGTTGCCAACCGATGATTCAGAGTATGAGCAGAGGATTCGTGGCGGCGATGCAGCCAATGCAAATACAACTCAATCTGCTGCTGCTGCTGCCAACAATTCCAGTGGTGTTGGTGGGAGTAGGGGGCCAGCTATTGACATTCAGAGTCAGGCACCACGTACAGTTGAGCGGAGGTTCACCATTTCCTTGCCTCGCCCTTTTAGGGGAATAGGGGAAGCCATAACTCGGAATCTGAGCCTAGACAAGAAGATCTTGATTGAGGACAATTGCAGGTATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

358

Amino Acids

38.23

Weight (kDa)

4.8

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	14 - 48	3.1e-14	zinc-ribbon
zf-RING_2	PF13639	221 - 263	5e-13	Ring finger domain
zf-C3HC4_2	PF13923	221 - 262	4.2e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	221 - 249	1.3e-07	RING-like zinc finger
zf-C3HC4	PF00097	222 - 262	1.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50350 AT3G19950 AT3G19950 AT3G19950
fragaria_vesca	FvH4_5g18350
malus_domestica	MD06G1239200.v1.1 MD14G1245300.v1.1
prunus_persica	Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1
pyrus_communis	pycom14g20630
rosa_chinensis	RchiOBHm_Chr7g0177241
rosa_laevigata	RLG00000005553
rosa_multiflora	Rmu_co8390491.1_g000001 Rmu_sc0005310.1_g000014
rosa_roxburghii	Rroxscaffold_3G00276020
rosa_rugosa	Rorug06G0404100
rosa_samantha	Rh7AG004100 Rh7BG003900 Rh7CG003800 Rh7DG003800
rosa_wichuraiana	Rw7G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	667
Acc36I	ACCTGC	1 cut(s)	1053
AccB1I	GGYRCC	2 cut(s)	419, 943
AccBSI	CCGCTC	2 cut(s)	339, 961
AccII	CGCG	2 cut(s)	15, 329
AclWI	GGATC	3 cut(s)	461, 474, 557
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	2 cut(s)	235, 456
AcyI	GRCGYC	3 cut(s)	210, 363, 702
AfaI	GTAC	2 cut(s)	47, 952
AfiI	CCNNNNNNNGG	5 cut(s)	275, 352, 994, 995, 1017
AgsI	TTSAA	1 cut(s)	594
AjnI	CCWGG	2 cut(s)	523, 752
AjuI	GAANNNNNNNTTGG	4 cut(s)	176, 208, 793, 825
AluBI	AGCT	4 cut(s)	43, 550, 691, 923
AluI	AGCT	4 cut(s)	43, 550, 691, 923
AlwI	GGATC	3 cut(s)	461, 474, 557
Ama87I	CYCGRG	1 cut(s)	530
AoxI	GGCC	6 cut(s)	265, 411, 520, 526, 609, 917
ApeKI	GCWGC	6 cut(s)	547, 845, 872, 875, 878, 881
ApoI	RAATTY	1 cut(s)	302
AscI	GGCGCGCC	1 cut(s)	327
AsiSI	GCGATCGC	1 cut(s)	67
AspLEI	GCGC	4 cut(s)	15, 329, 331, 668
AspS9I	GGNCC	6 cut(s)	266, 281, 355, 411, 521, 917
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	961
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	2 cut(s)	281, 355
AxyI	CCTNAGG	1 cut(s)	407
BamHI	GGATCC	1 cut(s)	466
BanI	GGYRCC	2 cut(s)	419, 943
BauI	CACGAG	1 cut(s)	791
BbvI	GCAGC	6 cut(s)	559, 857, 859, 862, 865, 868
BccI	CCATC	2 cut(s)	136, 611
BceAI	ACGGC	1 cut(s)	592
BcgI	CGANNNNNNTGC	2 cut(s)	812, 846
BciT130I	CCWGG	2 cut(s)	525, 754
BcnI	CCSGG	1 cut(s)	285
BfaI	CTAG	1 cut(s)	1031
BfuAI	ACCTGC	1 cut(s)	1053
BglI	GCCNNNNNGGC	1 cut(s)	608
BglII	AGATCT	1 cut(s)	1041
Bme1390I	CCNGG	3 cut(s)	285, 525, 754
Bme18I	GGWCC	2 cut(s)	281, 355
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	6 cut(s)	266, 281, 355, 411, 521, 917
BmiI	GGNNCC	6 cut(s)	268, 357, 421, 468, 918, 945
BmrFI	CCNGG	3 cut(s)	285, 525, 754
BmsI	GCATC	3 cut(s)	36, 702, 832
BpmI	CTGGAG	2 cut(s)	211, 371
BpuMI	CCSGG	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	950
BsaHI	GRCGYC	3 cut(s)	210, 363, 702
BsaJI	CCNNGG	3 cut(s)	316, 523, 752
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	5 cut(s)	275, 352, 994, 995, 1017
Bse118I	RCCGGY	2 cut(s)	275, 586
Bse1I	ACTGG	4 cut(s)	58, 127, 617, 894
Bse21I	CCTNAGG	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	525, 754
BseDI	CCNNGG	3 cut(s)	316, 523, 752
BseGI	GGATG	1 cut(s)	540
BseLI	CCNNNNNNNGG	5 cut(s)	275, 352, 994, 995, 1017
BseMII	CTCAG	3 cut(s)	53, 674, 1016
BseNI	ACTGG	4 cut(s)	58, 127, 617, 894
BsePI	GCGCGC	1 cut(s)	327
BseRI	GAGGAG	2 cut(s)	305, 474
BseXI	GCAGC	6 cut(s)	559, 857, 859, 862, 865, 868
BseYI	CCCAGC	1 cut(s)	259
Bsh1236I	CGCG	2 cut(s)	15, 329
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	6 cut(s)	267, 413, 522, 528, 611, 919
BshNI	GGYRCC	2 cut(s)	419, 943
BsiEI	CGRYCG	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	4 cut(s)	24, 276, 284, 587
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	5 cut(s)	275, 352, 994, 995, 1017
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	6 cut(s)	267, 413, 522, 528, 611, 919
BsoBI	CYCGRG	1 cut(s)	530
Bsp143I	GATC	5 cut(s)	64, 100, 466, 562, 1041
BspANI	GGCC	6 cut(s)	267, 413, 522, 528, 611, 919
BspCNI	CTCAG	3 cut(s)	52, 673, 1017
BspFNI	CGCG	2 cut(s)	15, 329
BspLI	GGNNCC	6 cut(s)	268, 357, 421, 468, 918, 945
BspMI	ACCTGC	1 cut(s)	1053
BspPI	GGATC	3 cut(s)	461, 474, 557
BspT107I	GGYRCC	2 cut(s)	419, 943
BsrBI	CCGCTC	2 cut(s)	339, 961
BsrFI	RCCGGY	2 cut(s)	275, 586
BsrI	ACTGG	4 cut(s)	58, 127, 617, 894
BssAI	RCCGGY	2 cut(s)	275, 586
BssECI	CCNNGG	3 cut(s)	316, 523, 752
BssHII	GCGCGC	1 cut(s)	327
BssMI	GATC	5 cut(s)	64, 100, 466, 562, 1041
BssNI	GRCGYC	3 cut(s)	210, 363, 702
BssSI	CACGAG	1 cut(s)	791
Bst2BI	CACGAG	1 cut(s)	791
Bst2UI	CCWGG	2 cut(s)	525, 754
Bst4CI	ACNGT	4 cut(s)	73, 158, 419, 955
Bst6I	CTCTTC	2 cut(s)	132, 254
BstACI	GRCGYC	3 cut(s)	210, 363, 702
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstBAI	YACGTR	1 cut(s)	950
BstC8I	GCNNGC	6 cut(s)	265, 329, 552, 581, 722, 921
BstDEI	CTNAG	4 cut(s)	39, 407, 660, 1025
BstF5I	GGATG	1 cut(s)	540
BstFNI	CGCG	2 cut(s)	15, 329
BstHHI	GCGC	4 cut(s)	15, 329, 331, 668
BstKTI	GATC	5 cut(s)	67, 103, 469, 565, 1044
BstMBI	GATC	5 cut(s)	64, 100, 466, 562, 1041
BstMCI	CGRYCG	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	525, 754
BstSCI	CCNGG	3 cut(s)	283, 523, 752
BstUI	CGCG	2 cut(s)	15, 329
BstV1I	GCAGC	6 cut(s)	559, 857, 859, 862, 865, 868
BstX2I	RGATCY	2 cut(s)	466, 1041
BstYI	RGATCY	2 cut(s)	466, 1041
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	6 cut(s)	267, 413, 522, 528, 611, 919
BtgZI	GCGATG	2 cut(s)	13, 855
BtsCI	GGATG	1 cut(s)	540
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	5 cut(s)	65, 120, 668, 675, 901
BveI	ACCTGC	1 cut(s)	1053
Cac8I	GCNNGC	6 cut(s)	265, 329, 552, 581, 722, 921
CfoI	GCGC	4 cut(s)	15, 329, 331, 668
Cfr10I	RCCGGY	2 cut(s)	275, 586
Cfr13I	GGNCC	6 cut(s)	266, 281, 355, 411, 521, 917
CseI	GACGC	3 cut(s)	218, 371, 710
Csp6I	GTAC	2 cut(s)	46, 951
CspCI	CAANNNNNGTGG	2 cut(s)	877, 912
CviAII	CATG	1 cut(s)	774
CviQI	GTAC	2 cut(s)	46, 951
DdeI	CTNAG	4 cut(s)	39, 407, 660, 1025
DpnI	GATC	5 cut(s)	66, 102, 468, 564, 1043
DpnII	GATC	5 cut(s)	64, 100, 466, 562, 1041
Eam1104I	CTCTTC	2 cut(s)	132, 254
EarI	CTCTTC	2 cut(s)	132, 254
EciI	GGCGGA	2 cut(s)	298, 471
Eco147I	AGGCCT	2 cut(s)	528, 611
Eco47I	GGWCC	2 cut(s)	281, 355
Eco57I	CTGAAG	2 cut(s)	235, 456
Eco81I	CCTNAGG	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	530
EcoO109I	RGGNCCY	2 cut(s)	266, 355
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	523, 752
FaeI	CATG	1 cut(s)	777
FaiI	YATR	6 cut(s)	730, 768, 775, 819, 1013, 1068
FalI	AAGNNNNNCTT	4 cut(s)	626, 658, 1028, 1060
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	1 cut(s)	773
FauI	CCCGC	2 cut(s)	277, 344
FokI	GGATG	1 cut(s)	527
FspBI	CTAG	1 cut(s)	1031
FspI	TGCGCA	1 cut(s)	667
GlaI	GCGC	4 cut(s)	14, 328, 330, 667
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	2 cut(s)	211, 371
HaeIII	GGCC	6 cut(s)	267, 413, 522, 528, 611, 919
HapII	CCGG	4 cut(s)	24, 276, 284, 587
HgaI	GACGC	3 cut(s)	218, 371, 710
HhaI	GCGC	4 cut(s)	15, 329, 331, 668
Hin1I	GRCGYC	3 cut(s)	210, 363, 702
Hin1II	CATG	1 cut(s)	777
Hin6I	GCGC	4 cut(s)	13, 327, 329, 666
HinP1I	GCGC	4 cut(s)	13, 327, 329, 666
HinfI	GANTC	7 cut(s)	647, 653, 680, 809, 829, 937, 1021
HpaII	CCGG	4 cut(s)	24, 276, 284, 587
HphI	GGTGA	1 cut(s)	961
Hpy166II	GTNNAC	1 cut(s)	969
Hpy188I	TCNGA	8 cut(s)	100, 208, 652, 739, 814, 936, 1020, 1026
Hpy188III	TCNNGA	3 cut(s)	353, 388, 1045
Hpy8I	GTNNAC	1 cut(s)	969
Hpy99I	CGWCG	3 cut(s)	212, 302, 365
HpyAV	CCTTC	8 cut(s)	96, 199, 208, 225, 229, 342, 376, 480
HpyCH4III	ACNGT	4 cut(s)	73, 158, 419, 955
HpyCH4IV	ACGT	1 cut(s)	949
HpyCH4V	TGCA	7 cut(s)	120, 400, 720, 766, 845, 854, 1062
HpyF3I	CTNAG	4 cut(s)	39, 407, 660, 1025
HpySE526I	ACGT	1 cut(s)	949
Hsp92I	GRCGYC	3 cut(s)	210, 363, 702
Hsp92II	CATG	1 cut(s)	777
HspAI	GCGC	4 cut(s)	13, 327, 329, 666
Kzo9I	GATC	5 cut(s)	64, 100, 466, 562, 1041
Lsp1109I	GCAGC	6 cut(s)	559, 857, 859, 862, 865, 868
LweI	GCATC	3 cut(s)	36, 702, 832
MaeI	CTAG	1 cut(s)	1031
MaeII	ACGT	1 cut(s)	949
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	66, 102, 468, 564, 1043
MbiI	CCGCTC	2 cut(s)	339, 961
MboI	GATC	5 cut(s)	64, 100, 466, 562, 1041
MboII	GAAGA	7 cut(s)	149, 184, 241, 508, 648, 740, 1051
MfeI	CAATTG	2 cut(s)	106, 1057
MflI	RGATCY	2 cut(s)	466, 1041
MluCI	AATT	6 cut(s)	106, 302, 499, 761, 889, 1057
MlyI	GAGTC	2 cut(s)	674, 946
MmeI	TCCRAC	2 cut(s)	231, 738
MseI	TTAA	1 cut(s)	498
MspA1I	CMGCKG	3 cut(s)	43, 231, 450
MspI	CCGG	4 cut(s)	24, 276, 284, 587
MspR9I	CCNGG	3 cut(s)	285, 525, 754
MunI	CAATTG	2 cut(s)	106, 1057
MvaI	CCWGG	2 cut(s)	525, 754
MvnI	CGCG	2 cut(s)	15, 329
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	5 cut(s)	64, 100, 466, 562, 1041
NlaIII	CATG	1 cut(s)	777
NlaIV	GGNNCC	6 cut(s)	268, 357, 421, 468, 918, 945
NmeAIII	GCCGAG	1 cut(s)	580
NsbI	TGCGCA	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	530
PalAI	GGCGCGCC	1 cut(s)	327
PauI	GCGCGC	1 cut(s)	327
PceI	AGGCCT	2 cut(s)	528, 611
PfeI	GAWTC	5 cut(s)	647, 653, 809, 829, 1021
PfoI	TCCNGGA	1 cut(s)	283
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	2 cut(s)	674, 945
PpsI	GAGTC	2 cut(s)	674, 945
Ppu21I	YACGTR	1 cut(s)	950
PpuMI	RGGWCCY	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	523, 752
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	2 cut(s)	523, 752
PspN4I	GGNNCC	6 cut(s)	268, 357, 421, 468, 918, 945
PspPI	GGNCC	6 cut(s)	266, 281, 355, 411, 521, 917
PspPPI	RGGWCCY	1 cut(s)	355
PspXI	VCTCGAGB	1 cut(s)	530
PsuI	RGATCY	2 cut(s)	466, 1041
PteI	GCGCGC	1 cut(s)	327
PvuI	CGATCG	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	43
RgaI	GCGATCGC	1 cut(s)	67
RsaI	GTAC	2 cut(s)	47, 952
RsaNI	GTAC	2 cut(s)	46, 951
SaqAI	TTAA	1 cut(s)	498
Sau3AI	GATC	5 cut(s)	64, 100, 466, 562, 1041
Sau96I	GGNCC	6 cut(s)	266, 281, 355, 411, 521, 917
SchI	GAGTC	2 cut(s)	674, 946
ScrFI	CCNGG	3 cut(s)	285, 525, 754
SetI	ASST	8 cut(s)	45, 98, 552, 693, 925, 952, 968, 1067
SfaAI	GCGATCGC	1 cut(s)	67
SfaNI	GCATC	3 cut(s)	36, 702, 832
Sfr274I	CTCGAG	1 cut(s)	530
SgfI	GCGATCGC	1 cut(s)	67
SgrAI	CRCCGGYG	1 cut(s)	275
SgsI	GGCGCGCC	1 cut(s)	327
SinI	GGWCC	2 cut(s)	281, 355
SlaI	CTCGAG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	6 cut(s)	106, 302, 499, 761, 889, 1057
SseBI	AGGCCT	2 cut(s)	528, 611
SspMI	CTAG	1 cut(s)	1031
StuI	AGGCCT	2 cut(s)	528, 611
StyD4I	CCNGG	3 cut(s)	283, 523, 752
TaaI	ACNGT	4 cut(s)	73, 158, 419, 955
TaiI	ACGT	1 cut(s)	952
TaqI	TCGA	4 cut(s)	135, 369, 531, 606
TasI	AATT	6 cut(s)	106, 302, 499, 761, 889, 1057
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	7 cut(s)	18, 129, 234, 275, 453, 456, 840
TfiI	GAWTC	5 cut(s)	647, 653, 809, 829, 1021
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	5 cut(s)	65, 127, 668, 675, 901
TseI	GCWGC	6 cut(s)	547, 845, 872, 875, 878, 881
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	5 cut(s)	65, 127, 668, 675, 901
VpaK11BI	GGWCC	2 cut(s)	281, 355
XapI	RAATTY	1 cut(s)	302
XhoI	CTCGAG	1 cut(s)	530
XspI	CTAG	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.