Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009074

Physical Location & Seq

Genomic Coordinates Forward (+)

67318052 .. 67321193

Gene Structure 3142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00276020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAAACCCCTAATCCTAACCCTACCCACAACCCCTTCTTCTCCTTCCCCTCCGACGCCCCTCCCTTCGCCTCCAGCGGCTTTCCCTCCTTTCTCTTCAGCACCCCAGCGGCCGGTGGTCCGGGAAATCTTGGCGACGAACTCTCCGCCCTCCTCGGTGGTGGTGCGCCTGCCTCCCGCTCGTCCCCCTTTCAGGACCCCGACGCCTTCGACCCCTTTGTGTTCCTCCAGAACTATTTGCAAACCCTAAGGGCCAATGGTGCCAATGTTCAGTTTGTGATTGACAGCGGCGGCGGAGGAGGAGGAGGGGATCCTTCAGGCTTCCGCGTTCCCACCAATCTTAATTTTGGAGATTACTTCTTCGGCCCAGGCCTCGAGCAACTCATCCAGCAGCTTGCCGAGAATGATCCAAACCGCTACGGCACGCCACCGGCTTCAAAGTCTGCCATCGAGGCCTTGCCAGTTGTGACAATCTCAAAGGAGCTCTTGGATTCTGATTCTTCTCAGTGCGCAGTGTGTAAGGACTCGTTTGAGCTTGGGGAGGAGGCCAAGCAGATGCCCTGCAAGCACTTATACCATTCTGATTGTATTCTTCCCTGGTTGGAATTGCATAACTCATGCCCTGTTTGTCGCCACGAGTTGCCAACCGATGATTCAGAGTATGAGCAGAGGATTCGTGGCGGCGATGCAGCCAATGCAAATACAACTCAATCTGCTGCTGCTGCCAACAATTCCAGTGGTGTTGGTGGGAGTAGGGGGCCACCTGTTGACATTCAGAGTCAGGCACCACGTACAGTTGAGCGGAGGTTCACCATTTCCTTGCCTCGCATTTTTAGATTCGGTGGTGCACCCGAGACTAGTAATACTGGGAGTGGAAGTGGAAGTGGAAGTGGTGATGGGCCTAACTCAGGGAATAGGGGAAGCCATAACTCGGAATCTGAGCCTAGACAAGAAGATCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

321

Amino Acids

33.75

Weight (kDa)

4.6

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	169 - 211	3.8e-13	Ring finger domain
zf-C3HC4_2	PF13923	169 - 210	6e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	169 - 197	5.9e-08	RING-like zinc finger
zf-C3HC4	PF00097	170 - 210	1.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50350 AT3G19950 AT3G19950 AT3G19950
fragaria_vesca	FvH4_5g18350
malus_domestica	MD06G1239200.v1.1 MD14G1245300.v1.1
prunus_persica	Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1
pyrus_communis	pycom14g20630
rosa_chinensis	RchiOBHm_Chr7g0177241
rosa_laevigata	RLG00000005553
rosa_multiflora	Rmu_co8390491.1_g000001 Rmu_sc0005310.1_g000014
rosa_roxburghii	Rroxscaffold_3G00276020
rosa_rugosa	Rorug06G0404100
rosa_samantha	Rh7AG004100 Rh7BG003900 Rh7CG003800 Rh7DG003800
rosa_wichuraiana	Rw7G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	511
AccB1I	GGYRCC	2 cut(s)	260, 784
AccBSI	CCGCTC	2 cut(s)	180, 802
AccII	CGCG	1 cut(s)	327
AclWI	GGATC	3 cut(s)	305, 318, 401
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	2 cut(s)	82, 300
AcyI	GRCGYC	2 cut(s)	57, 204
AfaI	GTAC	1 cut(s)	793
AfiI	CCNNNNNNNGG	4 cut(s)	113, 193, 908, 931
AgsI	TTSAA	1 cut(s)	438
AhlI	ACTAGT	1 cut(s)	857
AjnI	CCWGG	2 cut(s)	367, 596
AjuI	GAANNNNNNNTTGG	2 cut(s)	637, 669
AluBI	AGCT	3 cut(s)	394, 484, 535
AluI	AGCT	3 cut(s)	394, 484, 535
Alw21I	GWGCWC	2 cut(s)	486, 850
Alw26I	GTCTC	1 cut(s)	848
Alw44I	GTGCAC	1 cut(s)	846
AlwI	GGATC	3 cut(s)	305, 318, 401
Ama87I	CYCGRG	2 cut(s)	374, 851
AoxI	GGCC	8 cut(s)	111, 252, 364, 370, 453, 546, 758, 899
ApaLI	GTGCAC	1 cut(s)	846
ApeKI	GCWGC	5 cut(s)	391, 689, 716, 719, 722
AspLEI	GCGC	2 cut(s)	169, 512
AspS9I	GGNCC	6 cut(s)	119, 196, 252, 365, 758, 899
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	802, 905
AvaI	CYCGRG	2 cut(s)	374, 851
AvaII	GGWCC	2 cut(s)	119, 196
AxyI	CCTNAGG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	850
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	2 cut(s)	260, 784
BanII	GRGCYC	1 cut(s)	486
BauI	CACGAG	1 cut(s)	635
Bbv12I	GWGCWC	2 cut(s)	486, 850
BbvI	GCAGC	5 cut(s)	403, 701, 703, 706, 709
BccI	CCATC	2 cut(s)	455, 890
BceAI	ACGGC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	2 cut(s)	369, 598
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	848
BcuI	ACTAGT	1 cut(s)	857
BfaI	CTAG	2 cut(s)	858, 945
BglI	GCCNNNNNGGC	1 cut(s)	452
BglII	AGATCT	1 cut(s)	955
Bme1390I	CCNGG	3 cut(s)	123, 369, 598
Bme18I	GGWCC	2 cut(s)	119, 196
BmeT110I	CYCGRG	2 cut(s)	374, 851
BmgT120I	GGNCC	6 cut(s)	119, 196, 252, 365, 758, 899
BmiI	GGNNCC	5 cut(s)	198, 262, 312, 759, 786
BmrFI	CCNGG	3 cut(s)	123, 369, 598
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	2 cut(s)	546, 676
BmuI	ACTGGG	1 cut(s)	876
BpmI	CTGGAG	2 cut(s)	58, 212
BpuMI	CCSGG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	791
BsaHI	GRCGYC	2 cut(s)	57, 204
BsaJI	CCNNGG	3 cut(s)	154, 367, 596
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 862, 892
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 193, 908, 931
Bse118I	RCCGGY	2 cut(s)	113, 430
Bse1I	ACTGG	3 cut(s)	461, 735, 871
Bse21I	CCTNAGG	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	369, 598
BseDI	CCNNGG	3 cut(s)	154, 367, 596
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	4 cut(s)	113, 193, 908, 931
BseMII	CTCAG	3 cut(s)	518, 921, 930
BseNI	ACTGG	3 cut(s)	461, 735, 871
BseRI	GAGGAG	5 cut(s)	143, 312, 315, 318, 557
BseSI	GKGCMC	1 cut(s)	850
BseX3I	CGGCCG	1 cut(s)	111
BseXI	GCAGC	5 cut(s)	403, 701, 703, 706, 709
BseYI	CCCAGC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	8 cut(s)	113, 254, 366, 372, 455, 548, 760, 901
BshNI	GGYRCC	2 cut(s)	260, 784
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	486, 850
BsiHKCI	CYCGRG	2 cut(s)	374, 851
BsiSI	CCGG	3 cut(s)	114, 122, 431
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	4 cut(s)	113, 193, 908, 931
BsmAI	GTCTC	1 cut(s)	848
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	8 cut(s)	113, 254, 366, 372, 455, 548, 760, 901
BsoBI	CYCGRG	2 cut(s)	374, 851
Bsp1286I	GDGCHC	2 cut(s)	486, 850
Bsp143I	GATC	3 cut(s)	310, 406, 955
BspANI	GGCC	8 cut(s)	113, 254, 366, 372, 455, 548, 760, 901
BspCNI	CTCAG	3 cut(s)	517, 920, 931
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	5 cut(s)	198, 262, 312, 759, 786
BspPI	GGATC	3 cut(s)	305, 318, 401
BspT107I	GGYRCC	2 cut(s)	260, 784
BsrBI	CCGCTC	2 cut(s)	180, 802
BsrFI	RCCGGY	2 cut(s)	113, 430
BsrI	ACTGG	3 cut(s)	461, 735, 871
BssAI	RCCGGY	2 cut(s)	113, 430
BssECI	CCNNGG	3 cut(s)	154, 367, 596
BssMI	GATC	3 cut(s)	310, 406, 955
BssNI	GRCGYC	2 cut(s)	57, 204
BssSI	CACGAG	1 cut(s)	635
Bst2BI	CACGAG	1 cut(s)	635
Bst2UI	CCWGG	2 cut(s)	369, 598
Bst4CI	ACNGT	1 cut(s)	796
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	2 cut(s)	57, 204
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstBAI	YACGTR	1 cut(s)	791
BstC8I	GCNNGC	4 cut(s)	171, 396, 425, 566
BstDEI	CTNAG	4 cut(s)	248, 504, 907, 939
BstENI	CCTNNNNNAGG	1 cut(s)	906
BstF5I	GGATG	1 cut(s)	384
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	169, 512
BstKTI	GATC	3 cut(s)	313, 409, 958
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	3 cut(s)	310, 406, 955
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 452, 565, 695, 722
BstNI	CCWGG	2 cut(s)	369, 598
BstSCI	CCNGG	3 cut(s)	121, 367, 596
BstSLI	GKGCMC	1 cut(s)	850
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	5 cut(s)	403, 701, 703, 706, 709
BstX2I	RGATCY	2 cut(s)	310, 955
BstYI	RGATCY	2 cut(s)	310, 955
BstZI	CGGCCG	1 cut(s)	111
Bsu36I	CCTNAGG	1 cut(s)	248
BsuRI	GGCC	8 cut(s)	113, 254, 366, 372, 455, 548, 760, 901
BtgZI	GCGATG	1 cut(s)	699
BtsCI	GGATG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	512, 519, 742
Cac8I	GCNNGC	4 cut(s)	171, 396, 425, 566
CfoI	GCGC	2 cut(s)	169, 512
Cfr10I	RCCGGY	2 cut(s)	113, 430
Cfr13I	GGNCC	6 cut(s)	119, 196, 252, 365, 758, 899
CseI	GACGC	2 cut(s)	65, 212
Csp6I	GTAC	1 cut(s)	792
CspCI	CAANNNNNGTGG	2 cut(s)	718, 753
CviAII	CATG	1 cut(s)	618
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	4 cut(s)	248, 504, 907, 939
DpnI	GATC	3 cut(s)	312, 408, 957
DpnII	GATC	3 cut(s)	310, 406, 955
EaeI	YGGCCR	1 cut(s)	111
EagI	CGGCCG	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	2 cut(s)	136, 309
Ecl136II	GAGCTC	1 cut(s)	484
EclXI	CGGCCG	1 cut(s)	111
Eco147I	AGGCCT	2 cut(s)	372, 455
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	2 cut(s)	119, 196
Eco52I	CGGCCG	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	82, 300
Eco81I	CCTNAGG	1 cut(s)	248
Eco88I	CYCGRG	2 cut(s)	374, 851
EcoICRI	GAGCTC	1 cut(s)	484
EcoNI	CCTNNNNNAGG	1 cut(s)	906
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	367, 596
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	1 cut(s)	621
FaiI	YATR	5 cut(s)	574, 612, 619, 663, 927
FalI	AAGNNNNNCTT	3 cut(s)	470, 502, 942
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	617
FauI	CCCGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	858, 945
FspI	TGCGCA	1 cut(s)	511
GlaI	GCGC	2 cut(s)	168, 511
GsaI	CCCAGC	1 cut(s)	110
GsuI	CTGGAG	2 cut(s)	58, 212
HaeIII	GGCC	8 cut(s)	113, 254, 366, 372, 455, 548, 760, 901
HapII	CCGG	3 cut(s)	114, 122, 431
HgaI	GACGC	2 cut(s)	65, 212
HhaI	GCGC	2 cut(s)	169, 512
Hin1I	GRCGYC	2 cut(s)	57, 204
Hin1II	CATG	1 cut(s)	621
Hin6I	GCGC	2 cut(s)	167, 510
HinP1I	GCGC	2 cut(s)	167, 510
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	8 cut(s)	491, 497, 524, 653, 673, 778, 837, 935
HpaII	CCGG	3 cut(s)	114, 122, 431
HphI	GGTGA	2 cut(s)	802, 905
Hpy166II	GTNNAC	3 cut(s)	769, 810, 848
Hpy188I	TCNGA	7 cut(s)	55, 496, 583, 658, 777, 934, 940
Hpy188III	TCNNGA	3 cut(s)	194, 229, 959
Hpy8I	GTNNAC	3 cut(s)	769, 810, 848
Hpy99I	CGWCG	3 cut(s)	59, 140, 206
HpyAV	CCTTC	5 cut(s)	46, 55, 76, 217, 324
HpyCH4III	ACNGT	1 cut(s)	796
HpyCH4IV	ACGT	1 cut(s)	790
HpyCH4V	TGCA	6 cut(s)	241, 564, 610, 689, 698, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 452, 565, 695, 722
HpyF3I	CTNAG	4 cut(s)	248, 504, 907, 939
HpySE526I	ACGT	1 cut(s)	790
Hsp92I	GRCGYC	2 cut(s)	57, 204
Hsp92II	CATG	1 cut(s)	621
HspAI	GCGC	2 cut(s)	167, 510
Kzo9I	GATC	3 cut(s)	310, 406, 955
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	5 cut(s)	403, 701, 703, 706, 709
LweI	GCATC	2 cut(s)	546, 676
MaeI	CTAG	2 cut(s)	858, 945
MaeII	ACGT	1 cut(s)	790
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	3 cut(s)	312, 408, 957
MbiI	CCGCTC	2 cut(s)	180, 802
MboI	GATC	3 cut(s)	310, 406, 955
MboII	GAAGA	6 cut(s)	31, 88, 352, 492, 584, 965
MflI	RGATCY	2 cut(s)	310, 955
MhlI	GDGCHC	2 cut(s)	486, 850
MluCI	AATT	3 cut(s)	343, 605, 730
MlyI	GAGTC	2 cut(s)	518, 787
MmeI	TCCRAC	2 cut(s)	78, 582
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	3 cut(s)	78, 110, 288
MspI	CCGG	3 cut(s)	114, 122, 431
MspR9I	CCNGG	3 cut(s)	123, 369, 598
MvaI	CCWGG	2 cut(s)	369, 598
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	5 cut(s)	260, 452, 565, 695, 722
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	3 cut(s)	310, 406, 955
NlaIII	CATG	1 cut(s)	621
NlaIV	GGNNCC	5 cut(s)	198, 262, 312, 759, 786
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	466
NsbI	TGCGCA	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	374
PceI	AGGCCT	2 cut(s)	372, 455
PfeI	GAWTC	6 cut(s)	491, 497, 653, 673, 837, 935
PfoI	TCCNGGA	1 cut(s)	121
PleI	GAGTC	2 cut(s)	518, 786
PpsI	GAGTC	2 cut(s)	518, 786
Ppu21I	YACGTR	1 cut(s)	791
PpuMI	RGGWCCY	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	367, 596
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	2 cut(s)	367, 596
PspN4I	GGNNCC	5 cut(s)	198, 262, 312, 759, 786
PspPI	GGNCC	6 cut(s)	119, 196, 252, 365, 758, 899
PspPPI	RGGWCCY	1 cut(s)	196
PspXI	VCTCGAGB	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	310, 955
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	342
Sau3AI	GATC	3 cut(s)	310, 406, 955
Sau96I	GGNCC	6 cut(s)	119, 196, 252, 365, 758, 899
SchI	GAGTC	2 cut(s)	518, 787
ScrFI	CCNGG	3 cut(s)	123, 369, 598
SduI	GDGCHC	2 cut(s)	486, 850
SetI	ASST	6 cut(s)	396, 486, 537, 766, 793, 809
SfaNI	GCATC	2 cut(s)	546, 676
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	2 cut(s)	119, 196
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	857
Sse9I	AATT	3 cut(s)	343, 605, 730
SseBI	AGGCCT	2 cut(s)	372, 455
SspMI	CTAG	2 cut(s)	858, 945
SstI	GAGCTC	1 cut(s)	486
StuI	AGGCCT	2 cut(s)	372, 455
StyD4I	CCNGG	3 cut(s)	121, 367, 596
TaaI	ACNGT	1 cut(s)	796
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	3 cut(s)	210, 375, 450
TasI	AATT	3 cut(s)	343, 605, 730
TauI	GCSGC	5 cut(s)	81, 113, 291, 294, 684
TfiI	GAWTC	6 cut(s)	491, 497, 653, 673, 837, 935
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	3 cut(s)	512, 519, 742
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	5 cut(s)	391, 689, 716, 719, 722
Tsp45I	GTSAC	1 cut(s)	466
TspRI	CASTG	3 cut(s)	512, 519, 742
VneI	GTGCAC	1 cut(s)	846
VpaK11BI	GGWCC	2 cut(s)	119, 196
XagI	CCTNNNNNAGG	1 cut(s)	906
XhoI	CTCGAG	1 cut(s)	374
XspI	CTAG	2 cut(s)	858, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.