Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8390491.1

Orthogroup ID

OG0009074

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 936

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8390491.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

tccgacgcccctcccttctcctcctccagcggctttccctcctttctcttcagcaccgcagcaggccccgccgccggtggtcggggaaatcttggcgacgaactctccgccctcttcagtggtggcgcgccttcctcccgctcgtccccctttcaggaccccgacgccttcgacccctttgtgttcctccagaactatttgcaaaccctaagggccgatggtgccaatgttcagtttgtgattgataacagcggcggaggaggaggaggaggagtaggggatccttcagccttccgtgttcccaccaatcttaattttggagattacttcttcggcccaggcctcgagcaactcatccagcagcttgccgagaatgatccaaaccgctacggcacgccaccggcttcaaagtccgccatcgaggccttgccagttgtgaaaatctcaaaggaactcttggattctgattcttctcagtgcgcagtgtgtaaggactcgtttgagcttggggaggaggccaagcagatgccctgcaagcacttataccattctgattgtattcttccctggttggaattgcataactcatgccctgtttgtcgccacgagttgccaaccgatgattcagagtacgagcagaggattcgtggcggcgacgcagccaatgcaaatacaactcaatcttctgctgctgccgccaacaattccagtggtgttggtgggagtagggggccagctgttgacattcagagtcaggcaccacgtacagttgagcggaggttcaccatttccttgcctcgcctttttagggtatttggtggtgcacccgagactagtaatactgggagtgcaagtggaaacaatgatgggcctaactcagggaataggggaagccgtaactcggaatctgagcctagacaagaagatcttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

311

Amino Acids

32.69

Weight (kDa)

4.65

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50350 AT3G19950 AT3G19950 AT3G19950
fragaria_vesca	FvH4_5g18350
malus_domestica	MD06G1239200.v1.1 MD14G1245300.v1.1
prunus_persica	Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1 Prupe.5G243100_v2.0.a1
pyrus_communis	pycom14g20630
rosa_chinensis	RchiOBHm_Chr7g0177241
rosa_laevigata	RLG00000005553
rosa_multiflora	Rmu_co8390491.1_g000001 Rmu_sc0005310.1_g000014
rosa_roxburghii	Rroxscaffold_3G00276020
rosa_rugosa	Rorug06G0404100
rosa_samantha	Rh7AG004100 Rh7BG003900 Rh7CG003800 Rh7DG003800
rosa_wichuraiana	Rw7G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	481
AccB1I	GGYRCC	2 cut(s)	221, 757
AccBSI	CCGCTC	2 cut(s)	141, 775
AccII	CGCG	1 cut(s)	128
AclWI	GGATC	3 cut(s)	275, 288, 371
AcuI	CTGAAG	3 cut(s)	34, 100, 270
AcyI	GRCGYC	2 cut(s)	6, 165
AfaI	GTAC	2 cut(s)	632, 766
AfiI	CCNNNNNNNGG	6 cut(s)	74, 81, 154, 808, 878, 901
AgsI	TTSAA	1 cut(s)	408
AhlI	ACTAGT	1 cut(s)	833
AjnI	CCWGG	2 cut(s)	337, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	607, 639
AluBI	AGCT	3 cut(s)	364, 505, 737
AluI	AGCT	3 cut(s)	364, 505, 737
Alw21I	GWGCWC	1 cut(s)	826
Alw26I	GTCTC	1 cut(s)	824
Alw44I	GTGCAC	1 cut(s)	822
AlwI	GGATC	3 cut(s)	275, 288, 371
Ama87I	CYCGRG	2 cut(s)	344, 827
AoxI	GGCC	8 cut(s)	64, 213, 334, 340, 423, 516, 731, 869
ApaLI	GTGCAC	1 cut(s)	822
ApeKI	GCWGC	5 cut(s)	59, 361, 659, 689, 692
AscI	GGCGCGCC	1 cut(s)	126
AspLEI	GCGC	3 cut(s)	128, 130, 482
AspS9I	GGNCC	6 cut(s)	65, 157, 213, 335, 731, 869
AsuHPI	GGTGA	1 cut(s)	775
AvaI	CYCGRG	2 cut(s)	344, 827
AvaII	GGWCC	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	826
BamHI	GGATCC	1 cut(s)	280
BanI	GGYRCC	2 cut(s)	221, 757
BauI	CACGAG	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	826
BbvI	GCAGC	5 cut(s)	71, 373, 671, 676, 679
BccI	CCATC	3 cut(s)	212, 425, 860
BceAI	ACGGC	2 cut(s)	406, 879
BcgI	CGANNNNNNTGC	2 cut(s)	626, 660
BciT130I	CCWGG	2 cut(s)	339, 568
BcoDI	GTCTC	1 cut(s)	824
BcuI	ACTAGT	1 cut(s)	833
BfaI	CTAG	2 cut(s)	834, 915
BglI	GCCNNNNNGGC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	925
Bme1390I	CCNGG	2 cut(s)	339, 568
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	2 cut(s)	344, 827
BmgT120I	GGNCC	6 cut(s)	65, 157, 213, 335, 731, 869
BmiI	GGNNCC	6 cut(s)	67, 159, 223, 282, 732, 759
BmrFI	CCNGG	2 cut(s)	339, 568
BmrI	ACTGGG	1 cut(s)	852
BmsI	GCATC	1 cut(s)	516
BmuI	ACTGGG	1 cut(s)	852
BpmI	CTGGAG	2 cut(s)	10, 173
BsaAI	YACGTR	1 cut(s)	764
BsaHI	GRCGYC	2 cut(s)	6, 165
BsaJI	CCNNGG	2 cut(s)	337, 566
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 258, 288, 838, 868
Bsc4I	CCNNNNNNNGG	6 cut(s)	74, 81, 154, 808, 878, 901
Bse118I	RCCGGY	2 cut(s)	74, 400
Bse1I	ACTGG	3 cut(s)	431, 708, 847
Bse21I	CCTNAGG	1 cut(s)	209
BseBI	CCWGG	2 cut(s)	339, 568
BseDI	CCNNGG	2 cut(s)	337, 566
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	6 cut(s)	74, 81, 154, 808, 878, 901
BseMII	CTCAG	3 cut(s)	488, 891, 900
BseNI	ACTGG	3 cut(s)	431, 708, 847
BsePI	GCGCGC	1 cut(s)	126
BseRI	GAGGAG	8 cut(s)	10, 13, 273, 276, 279, 282, 285, 527
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	5 cut(s)	71, 373, 671, 676, 679
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	8 cut(s)	66, 215, 336, 342, 425, 518, 733, 871
BshNI	GGYRCC	2 cut(s)	221, 757
BsiHKAI	GWGCWC	1 cut(s)	826
BsiHKCI	CYCGRG	2 cut(s)	344, 827
BsiSI	CCGG	2 cut(s)	75, 401
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	6 cut(s)	74, 81, 154, 808, 878, 901
BsmAI	GTCTC	1 cut(s)	824
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	8 cut(s)	66, 215, 336, 342, 425, 518, 733, 871
BsoBI	CYCGRG	2 cut(s)	344, 827
Bsp1286I	GDGCHC	1 cut(s)	826
Bsp143I	GATC	3 cut(s)	280, 376, 925
BspANI	GGCC	8 cut(s)	66, 215, 336, 342, 425, 518, 733, 871
BspCNI	CTCAG	3 cut(s)	487, 890, 901
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	6 cut(s)	67, 159, 223, 282, 732, 759
BspPI	GGATC	3 cut(s)	275, 288, 371
BspT107I	GGYRCC	2 cut(s)	221, 757
BsrBI	CCGCTC	2 cut(s)	141, 775
BsrFI	RCCGGY	2 cut(s)	74, 400
BsrI	ACTGG	3 cut(s)	431, 708, 847
BssAI	RCCGGY	2 cut(s)	74, 400
BssECI	CCNNGG	2 cut(s)	337, 566
BssHII	GCGCGC	1 cut(s)	126
BssMI	GATC	3 cut(s)	280, 376, 925
BssNI	GRCGYC	2 cut(s)	6, 165
BssSI	CACGAG	1 cut(s)	605
Bst2BI	CACGAG	1 cut(s)	605
Bst2UI	CCWGG	2 cut(s)	339, 568
Bst4CI	ACNGT	1 cut(s)	769
Bst6I	CTCTTC	2 cut(s)	53, 119
BstACI	GRCGYC	2 cut(s)	6, 165
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	764
BstC8I	GCNNGC	6 cut(s)	64, 128, 366, 395, 536, 735
BstDEI	CTNAG	4 cut(s)	209, 474, 877, 909
BstENI	CCTNNNNNAGG	1 cut(s)	876
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	3 cut(s)	128, 130, 482
BstKTI	GATC	3 cut(s)	283, 379, 928
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	3 cut(s)	280, 376, 925
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 221, 422, 535, 665, 695
BstNI	CCWGG	2 cut(s)	339, 568
BstSCI	CCNGG	2 cut(s)	337, 566
BstSLI	GKGCMC	1 cut(s)	826
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	5 cut(s)	71, 373, 671, 676, 679
BstX2I	RGATCY	2 cut(s)	280, 925
BstYI	RGATCY	2 cut(s)	280, 925
Bsu36I	CCTNAGG	1 cut(s)	209
BsuRI	GGCC	8 cut(s)	66, 215, 336, 342, 425, 518, 733, 871
BtsCI	GGATG	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	4 cut(s)	124, 482, 489, 715
Cac8I	GCNNGC	6 cut(s)	64, 128, 366, 395, 536, 735
CfoI	GCGC	3 cut(s)	128, 130, 482
Cfr10I	RCCGGY	2 cut(s)	74, 400
Cfr13I	GGNCC	6 cut(s)	65, 157, 213, 335, 731, 869
CseI	GACGC	3 cut(s)	14, 173, 665
Csp6I	GTAC	2 cut(s)	631, 765
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	1 cut(s)	588
CviQI	GTAC	2 cut(s)	631, 765
DdeI	CTNAG	4 cut(s)	209, 474, 877, 909
DpnI	GATC	3 cut(s)	282, 378, 927
DpnII	GATC	3 cut(s)	280, 376, 925
Eam1104I	CTCTTC	2 cut(s)	53, 119
EarI	CTCTTC	2 cut(s)	53, 119
EciI	GGCGGA	3 cut(s)	97, 270, 403
Eco147I	AGGCCT	2 cut(s)	342, 425
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	3 cut(s)	34, 100, 270
Eco81I	CCTNAGG	1 cut(s)	209
Eco88I	CYCGRG	2 cut(s)	344, 827
EcoNI	CCTNNNNNAGG	1 cut(s)	876
EcoO109I	RGGNCCY	2 cut(s)	65, 157
EcoRII	CCWGG	2 cut(s)	337, 566
FaeI	CATG	1 cut(s)	591
FaiI	YATR	3 cut(s)	544, 582, 589
FalI	AAGNNNNNCTT	3 cut(s)	440, 472, 912
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	587
FauI	CCCGC	2 cut(s)	76, 146
FokI	GGATG	1 cut(s)	341
FspBI	CTAG	2 cut(s)	834, 915
FspI	TGCGCA	1 cut(s)	481
GlaI	GCGC	3 cut(s)	127, 129, 481
GsuI	CTGGAG	2 cut(s)	10, 173
HaeIII	GGCC	8 cut(s)	66, 215, 336, 342, 425, 518, 733, 871
HapII	CCGG	2 cut(s)	75, 401
HgaI	GACGC	3 cut(s)	14, 173, 665
HhaI	GCGC	3 cut(s)	128, 130, 482
Hin1I	GRCGYC	2 cut(s)	6, 165
Hin1II	CATG	1 cut(s)	591
Hin6I	GCGC	3 cut(s)	126, 128, 480
HinP1I	GCGC	3 cut(s)	126, 128, 480
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HinfI	GANTC	7 cut(s)	461, 467, 494, 623, 643, 751, 905
HpaII	CCGG	2 cut(s)	75, 401
HphI	GGTGA	1 cut(s)	775
Hpy166II	GTNNAC	3 cut(s)	742, 783, 824
Hpy188I	TCNGA	7 cut(s)	4, 466, 553, 628, 750, 904, 910
Hpy188III	TCNNGA	3 cut(s)	155, 190, 929
Hpy8I	GTNNAC	3 cut(s)	742, 783, 824
Hpy99I	CGWCG	4 cut(s)	8, 101, 167, 659
HpyAV	CCTTC	5 cut(s)	25, 141, 178, 294, 301
HpyCH4III	ACNGT	1 cut(s)	769
HpyCH4IV	ACGT	1 cut(s)	763
HpyCH4V	TGCA	6 cut(s)	202, 534, 580, 668, 824, 851
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 221, 422, 535, 665, 695
HpyF3I	CTNAG	4 cut(s)	209, 474, 877, 909
HpySE526I	ACGT	1 cut(s)	763
Hsp92I	GRCGYC	2 cut(s)	6, 165
Hsp92II	CATG	1 cut(s)	591
HspAI	GCGC	3 cut(s)	126, 128, 480
Kzo9I	GATC	3 cut(s)	280, 376, 925
Lsp1109I	GCAGC	5 cut(s)	71, 373, 671, 676, 679
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	2 cut(s)	834, 915
MaeII	ACGT	1 cut(s)	763
MaeIII	GTNAC	1 cut(s)	896
MalI	GATC	3 cut(s)	282, 378, 927
MbiI	CCGCTC	2 cut(s)	141, 775
MboI	GATC	3 cut(s)	280, 376, 925
MboII	GAAGA	7 cut(s)	40, 106, 322, 462, 554, 675, 935
MflI	RGATCY	2 cut(s)	280, 925
MhlI	GDGCHC	1 cut(s)	826
MluCI	AATT	3 cut(s)	313, 575, 703
MlyI	GAGTC	2 cut(s)	488, 760
MmeI	TCCRAC	2 cut(s)	27, 552
MseI	TTAA	1 cut(s)	312
MspA1I	CMGCKG	3 cut(s)	30, 252, 737
MspI	CCGG	2 cut(s)	75, 401
MspR9I	CCNGG	2 cut(s)	339, 568
MvaI	CCWGG	2 cut(s)	339, 568
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	6 cut(s)	68, 221, 422, 535, 665, 695
NdeII	GATC	3 cut(s)	280, 376, 925
NlaIII	CATG	1 cut(s)	591
NlaIV	GGNNCC	6 cut(s)	67, 159, 223, 282, 732, 759
NmeAIII	GCCGAG	1 cut(s)	394
NsbI	TGCGCA	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	344
PalAI	GGCGCGCC	1 cut(s)	126
PauI	GCGCGC	1 cut(s)	126
PceI	AGGCCT	2 cut(s)	342, 425
PfeI	GAWTC	5 cut(s)	461, 467, 623, 643, 905
PleI	GAGTC	2 cut(s)	488, 759
PpsI	GAGTC	2 cut(s)	488, 759
Ppu21I	YACGTR	1 cut(s)	764
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	337, 566
PspGI	CCWGG	2 cut(s)	337, 566
PspN4I	GGNNCC	6 cut(s)	67, 159, 223, 282, 732, 759
PspPI	GGNCC	6 cut(s)	65, 157, 213, 335, 731, 869
PspPPI	RGGWCCY	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	280, 925
PteI	GCGCGC	1 cut(s)	126
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	2 cut(s)	632, 766
RsaNI	GTAC	2 cut(s)	631, 765
SaqAI	TTAA	1 cut(s)	312
Sau3AI	GATC	3 cut(s)	280, 376, 925
Sau96I	GGNCC	6 cut(s)	65, 157, 213, 335, 731, 869
SchI	GAGTC	2 cut(s)	488, 760
ScrFI	CCNGG	2 cut(s)	339, 568
SduI	GDGCHC	1 cut(s)	826
SetI	ASST	5 cut(s)	366, 507, 739, 766, 782
SfaNI	GCATC	1 cut(s)	516
Sfr274I	CTCGAG	1 cut(s)	344
SgrAI	CRCCGGYG	1 cut(s)	74
SgsI	GGCGCGCC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	157
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SpeI	ACTAGT	1 cut(s)	833
Sse9I	AATT	3 cut(s)	313, 575, 703
SseBI	AGGCCT	2 cut(s)	342, 425
SspMI	CTAG	2 cut(s)	834, 915
StuI	AGGCCT	2 cut(s)	342, 425
StyD4I	CCNGG	2 cut(s)	337, 566
TaaI	ACNGT	1 cut(s)	769
TaiI	ACGT	1 cut(s)	766
TaqI	TCGA	3 cut(s)	171, 345, 420
TasI	AATT	3 cut(s)	313, 575, 703
TauI	GCSGC	5 cut(s)	33, 74, 255, 654, 698
TfiI	GAWTC	5 cut(s)	461, 467, 623, 643, 905
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	4 cut(s)	124, 482, 489, 715
TseI	GCWGC	5 cut(s)	59, 361, 659, 689, 692
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	4 cut(s)	124, 482, 489, 715
VneI	GTGCAC	1 cut(s)	822
VpaK11BI	GGWCC	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	876
XhoI	CTCGAG	1 cut(s)	344
XspI	CTAG	2 cut(s)	834, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.