AT1G50570

C2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006102
Physical Location & Seq
Reverse (-)
18726235 .. 18728369
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50570.1

Sequence Viewer

Length: 1167 bp
ATGGAATCTCCACATTCTGAGGCATCAATCGTGAATGGTAGTATCCATTTGAATGGCAGTGGTGAAACCAAAACAAAGAATATAGTCATGTCGTCTGATTCAGACAGTTTCATCGGTGTGCTTGAGGTTTTTGTTCACCAAGCTAGGGACATCCACAACATCTGTATCTATCATAAGCAAGATGTGTATGCTAAGCTTTGTCTCACAAATGATCCCGAAAACTCCTTGTCCACAAAGATCATCAATGGTGGAGGGCAAAACCCTGTCTTCGACGATACCCTTCAGTTCGACGTTAAGAACCTGGATTGTTCGCTTAAGTGTGAGATATTTATGATGAGCCGCGTGAAGAATTATCTTGAGGATCAGTTACTTGGATTCTCTCTTGTACCTTTGTCTGAAGTGATTGTGAGGAATGGGAAATTGGAGAAAGAGTTCTCCCTTTCTTCAACCGATTTGTATCACTCTCCTGCAGGTTTTGTCGAGTTGTCTCTCTCGTACGCAGGAGATTCGCCTGACGTGATGCATATTCCTGCGGTTCCAACTGCGGATGAGACCGAGTTGGCTCCTATCGAGTTTGATGAGAGTGAGTTTTTGGATCCAAAGATTGTCTGTGAAAACAATCAAATGGTGTCTAAGTACTTCTCCACTACGTGTTCTGATTCTGATGATTTTGCAAGCTCTGAAACTGGCTTTGTGGAAGTAAACAGCATCCTGTCTGCAGTTGTTGAAACTGCTGTTGACGAAGCAGCACCGGCCAATTCTGTCTCAACAAATGGAATCTCATCTCCATCAACTGCAGTTAGCTCTGGCTCCTCGGGAACTCATGATGTTTCAAAGCAATCTAGTGAAGGAAACAACTCAGATTCAGAACAAGAAGCGAAGAAGCCAACAGATATCATCAAGAGTGGTGATTTAGATAAGACTGATGAAGAAGCAGTTGTGAAACCGGTTCTGACAGTGAACATTGAACCAGAGCAAAAGGTAGTGCAACAAGATATTGTTGACATGTACACAAAAAGCTTGCAGCAATTCACTGAGTCACTGGCTAAGATGAAACTTCCTTTGGACATCGATAGCCCAACCCAATCAGAGAACTCAAGCTCCTCCCAGCAGACGCCAAAGAGTGCTAGCTCCCGTGTTTTCTACGGGAGTAGAGCCTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

388

Amino Acids

42.15

Weight (kDa)

4.43

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 39 - 141 1.4e-10 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 461
AccII CGCG 1 cut(s) 342
AciI CCGC 3 cut(s) 340, 533, 545
AclWI GGATC 4 cut(s) 206, 369, 590, 603
AcoI YGGCCR 1 cut(s) 753
AcuI CTGAAG 2 cut(s) 266, 417
AcyI GRCGYC 1 cut(s) 1115
AdeI CACNNNGTG 1 cut(s) 651
AfaI GTAC 4 cut(s) 387, 497, 638, 1010
AfiI CCNNNNNNNGG 1 cut(s) 145
AflII CTTAAG 1 cut(s) 314
AflIII ACRYGT 2 cut(s) 650, 1005
AgeI ACCGGT 1 cut(s) 946
AgsI TTSAA 5 cut(s) 52, 447, 728, 834, 968
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 4 cut(s) 404, 436, 1046, 1078
AloI GAACNNNNNNTCC 4 cut(s) 416, 448, 1085, 1117
AluBI AGCT 7 cut(s) 143, 196, 678, 804, 1020, 1101, 1131
AluI AGCT 7 cut(s) 143, 196, 678, 804, 1020, 1101, 1131
Alw26I GTCTC 4 cut(s) 206, 492, 545, 769
AlwI GGATC 4 cut(s) 206, 369, 590, 603
Ama87I CYCGRG 1 cut(s) 814
AoxI GGCC 1 cut(s) 753
ApeKI GCWGC 2 cut(s) 746, 1024
AsiGI ACCGGT 1 cut(s) 946
Asp700I GAANNNNTTC 1 cut(s) 431
AsuHPI GGTGA 3 cut(s) 74, 128, 920
AsuNHI GCTAGC 1 cut(s) 1127
AvaI CYCGRG 1 cut(s) 814
BaeI ACNNNNGTAYC 2 cut(s) 148, 181
BamHI GGATCC 1 cut(s) 595
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 758, 1036
BccI CCATC 1 cut(s) 796
BcgI CGANNNNNNTGC 2 cut(s) 489, 523
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 1 cut(s) 53
BcoDI GTCTC 4 cut(s) 206, 492, 545, 769
BfaI CTAG 3 cut(s) 144, 843, 1128
BfmI CTRYAG 3 cut(s) 468, 717, 795
BfrI CTTAAG 1 cut(s) 314
BfuAI ACCTGC 1 cut(s) 461
BfuI GTATCC 1 cut(s) 53
BisI GCNGC 3 cut(s) 340, 747, 1025
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 3 cut(s) 341, 748, 1026
BmcAI AGTACT 1 cut(s) 638
Bme1390I CCNGG 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 814
BmgBI CACGTC 1 cut(s) 517
BmiI GGNNCC 4 cut(s) 537, 564, 597, 811
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 3 cut(s) 32, 510, 717
BmtI GCTAGC 1 cut(s) 1131
BpiI GAAGAC 1 cut(s) 259
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 3 cut(s) 143, 377, 1081
Bsa29I ATCGAT 1 cut(s) 1071
BsaAI YACGTR 1 cut(s) 651
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 1115
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 1 cut(s) 813
BsaWI WCCGGW 1 cut(s) 946
BsaXI ACNNNNNCTCC 4 cut(s) 416, 446, 1085, 1115
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 2 cut(s) 751, 946
Bse1I ACTGG 2 cut(s) 691, 1047
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 1 cut(s) 302
BseCI ATCGAT 1 cut(s) 1071
BseDI CCNNGG 1 cut(s) 813
BseGI GGATG 3 cut(s) 150, 553, 708
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 3 cut(s) 9, 873, 1026
BseNI ACTGG 2 cut(s) 691, 1047
BseRI GAGGAG 2 cut(s) 802, 1093
BseXI GCAGC 2 cut(s) 758, 1036
BseYI CCCAGC 1 cut(s) 1107
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 755
BshTI ACCGGT 1 cut(s) 946
BshVI ATCGAT 1 cut(s) 1071
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 2 cut(s) 752, 947
BsiWI CGTACG 1 cut(s) 495
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 4 cut(s) 206, 492, 545, 769
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 755
Bso31I GGTCTC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 814
Bsp1407I TGTACA 1 cut(s) 1008
Bsp143I GATC 4 cut(s) 211, 237, 361, 595
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 3 cut(s) 340, 533, 545
BspANI GGCC 1 cut(s) 755
BspCNI CTCAG 3 cut(s) 10, 872, 1027
BspDI ATCGAT 1 cut(s) 1071
BspFNI CGCG 1 cut(s) 342
BspHI TCATGA 1 cut(s) 823
BspLI GGNNCC 4 cut(s) 537, 564, 597, 811
BspMAI CTGCAG 3 cut(s) 472, 721, 799
BspMI ACCTGC 1 cut(s) 461
BspOI GCTAGC 1 cut(s) 1131
BspPI GGATC 4 cut(s) 206, 369, 590, 603
BspTI CTTAAG 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 545
BsrFI RCCGGY 2 cut(s) 751, 946
BsrGI TGTACA 1 cut(s) 1008
BsrI ACTGG 2 cut(s) 691, 1047
BssAI RCCGGY 2 cut(s) 751, 946
BssECI CCNNGG 1 cut(s) 813
BssMI GATC 4 cut(s) 211, 237, 361, 595
BssNI GRCGYC 1 cut(s) 1115
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 107, 958
BstACI GRCGYC 1 cut(s) 1115
BstAFI CTTAAG 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 1008
BstBAI YACGTR 1 cut(s) 651
BstC8I GCNNGC 3 cut(s) 676, 1022, 1129
BstDEI CTNAG 6 cut(s) 18, 192, 633, 859, 1035, 1047
BstF5I GGATG 3 cut(s) 150, 553, 708
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 4 cut(s) 214, 240, 364, 598
BstMAI GTCTC 4 cut(s) 206, 492, 545, 769
BstMBI GATC 4 cut(s) 211, 237, 361, 595
BstMWI GCNNNNNNNGC 1 cut(s) 752
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 1009
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 3 cut(s) 468, 717, 795
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 758, 1036
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 595
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 1 cut(s) 595
Bsu15I ATCGAT 1 cut(s) 1071
BsuI GTATCC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 755
BsuTUI ATCGAT 1 cut(s) 1071
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 3 cut(s) 150, 553, 708
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 4 cut(s) 64, 963, 1032, 1040
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 3 cut(s) 676, 1022, 1129
CciI TCATGA 1 cut(s) 823
Cfr10I RCCGGY 2 cut(s) 751, 946
ClaI ATCGAT 1 cut(s) 1071
CseI GACGC 1 cut(s) 1123
Csp6I GTAC 4 cut(s) 386, 496, 637, 1009
CspAI ACCGGT 1 cut(s) 946
CviAII CATG 3 cut(s) 88, 824, 1006
CviQI GTAC 4 cut(s) 386, 496, 637, 1009
DdeI CTNAG 6 cut(s) 18, 192, 633, 859, 1035, 1047
DpnI GATC 4 cut(s) 213, 239, 363, 597
DpnII GATC 4 cut(s) 211, 237, 361, 595
DraIII CACNNNGTG 1 cut(s) 651
EaeI YGGCCR 1 cut(s) 753
Eco31I GGTCTC 1 cut(s) 545
Eco32I GATATC 1 cut(s) 895
Eco57I CTGAAG 2 cut(s) 266, 417
Eco88I CYCGRG 1 cut(s) 814
EcoRII CCWGG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 895
EcoT22I ATGCAT 1 cut(s) 525
FaeI CATG 3 cut(s) 91, 827, 1009
FaiI YATR 8 cut(s) 83, 89, 174, 189, 332, 525, 825, 1007
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 87, 823, 1005
Fnu4HI GCNGC 3 cut(s) 340, 747, 1025
FokI GGATG 3 cut(s) 137, 560, 695
Fsp4HI GCNGC 3 cut(s) 340, 747, 1025
FspBI CTAG 3 cut(s) 144, 843, 1128
GluI GCNGC 3 cut(s) 340, 747, 1025
GsaI CCCAGC 1 cut(s) 1111
HaeIII GGCC 1 cut(s) 755
HapII CCGG 2 cut(s) 752, 947
HgaI GACGC 1 cut(s) 1123
Hin1I GRCGYC 1 cut(s) 1115
Hin1II CATG 3 cut(s) 91, 827, 1009
HincII GTYRAC 2 cut(s) 739, 1003
HindII GTYRAC 2 cut(s) 739, 1003
HindIII AAGCTT 2 cut(s) 194, 1018
HinfI GANTC 8 cut(s) 5, 98, 375, 506, 659, 777, 863, 1037
HpaII CCGG 2 cut(s) 752, 947
HphI GGTGA 3 cut(s) 74, 128, 920
Hpy166II GTNNAC 7 cut(s) 136, 231, 703, 739, 961, 1003, 1011
Hpy188III TCNNGA 6 cut(s) 31, 215, 356, 816, 824, 901
Hpy8I GTNNAC 7 cut(s) 136, 231, 703, 739, 961, 1003, 1011
Hpy99I CGWCG 2 cut(s) 275, 293
HpyAV CCTTC 2 cut(s) 290, 842
HpyCH4III ACNGT 2 cut(s) 107, 958
HpyCH4IV ACGT 3 cut(s) 291, 516, 650
HpyCH4V TGCA 7 cut(s) 470, 523, 674, 719, 797, 988, 1024
HpyF10VI GCNNNNNNNGC 1 cut(s) 752
HpyF3I CTNAG 6 cut(s) 18, 192, 633, 859, 1035, 1047
HpySE526I ACGT 3 cut(s) 291, 516, 650
Hsp92I GRCGYC 1 cut(s) 1115
Hsp92II CATG 3 cut(s) 91, 827, 1009
Kzo9I GATC 4 cut(s) 211, 237, 361, 595
LmnI GCTCC 4 cut(s) 568, 815, 1106, 1136
Lsp1109I GCAGC 2 cut(s) 758, 1036
LweI GCATC 3 cut(s) 32, 510, 717
MaeI CTAG 3 cut(s) 144, 843, 1128
MaeII ACGT 3 cut(s) 291, 516, 650
MaeIII GTNAC 2 cut(s) 366, 1038
MalI GATC 4 cut(s) 213, 239, 363, 597
MboI GATC 4 cut(s) 211, 237, 361, 595
MboII GAAGA 6 cut(s) 259, 358, 435, 892, 941, 1153
MflI RGATCY 1 cut(s) 595
MluCI AATT 4 cut(s) 349, 419, 757, 1028
MlyI GAGTC 1 cut(s) 1046
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 7 cut(s) 13, 118, 245, 352, 402, 823, 1114
Mph1103I ATGCAT 1 cut(s) 525
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 2 cut(s) 294, 315
MslI CAYNNNNRTG 2 cut(s) 51, 116
MspCI CTTAAG 1 cut(s) 314
MspI CCGG 2 cut(s) 752, 947
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 752
NdeII GATC 4 cut(s) 211, 237, 361, 595
NheI GCTAGC 1 cut(s) 1127
NlaIII CATG 3 cut(s) 91, 827, 1009
NlaIV GGNNCC 4 cut(s) 537, 564, 597, 811
NmuCI GTSAC 1 cut(s) 1038
NsiI ATGCAT 1 cut(s) 525
NspI RCATGY 1 cut(s) 1009
PagI TCATGA 1 cut(s) 823
PciI ACATGT 1 cut(s) 1005
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 7 cut(s) 5, 98, 375, 506, 659, 777, 863
Pfl23II CGTACG 1 cut(s) 495
PinAI ACCGGT 1 cut(s) 946
PkrI GCNGC 3 cut(s) 341, 748, 1026
PleI GAGTC 1 cut(s) 1045
PpsI GAGTC 1 cut(s) 1045
Ppu21I YACGTR 1 cut(s) 651
PscI ACATGT 1 cut(s) 1005
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 1107
PspGI CCWGG 1 cut(s) 300
PspLI CGTACG 1 cut(s) 495
PspN4I GGNNCC 4 cut(s) 537, 564, 597, 811
PstI CTGCAG 3 cut(s) 472, 721, 799
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 4 cut(s) 387, 497, 638, 1010
RsaNI GTAC 4 cut(s) 386, 496, 637, 1009
RseI CAYNNNNRTG 2 cut(s) 51, 116
SaqAI TTAA 2 cut(s) 294, 315
SatI GCNGC 3 cut(s) 340, 747, 1025
Sau3AI GATC 4 cut(s) 211, 237, 361, 595
SbfI CCTGCAGG 1 cut(s) 472
ScaI AGTACT 1 cut(s) 638
SchI GAGTC 1 cut(s) 1046
ScrFI CCNGG 1 cut(s) 302
SdaI CCTGCAGG 1 cut(s) 472
SfaNI GCATC 3 cut(s) 32, 510, 717
SfcI CTRYAG 3 cut(s) 468, 717, 795
SmiMI CAYNNNNRTG 2 cut(s) 51, 116
SmlI CTYRAG 4 cut(s) 122, 314, 356, 1096
SmoI CTYRAG 4 cut(s) 122, 314, 356, 1096
Sse8387I CCTGCAGG 1 cut(s) 472
Sse9I AATT 4 cut(s) 349, 419, 757, 1028
SsiI CCGC 3 cut(s) 340, 533, 545
SspMI CTAG 3 cut(s) 144, 843, 1128
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 107, 958
TaiI ACGT 3 cut(s) 294, 519, 653
TaqI TCGA 5 cut(s) 270, 288, 480, 570, 1071
TaqII GACCGA 1 cut(s) 569
TasI AATT 4 cut(s) 349, 419, 757, 1028
TatI WGTACW 2 cut(s) 636, 1008
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 7 cut(s) 5, 98, 375, 506, 659, 777, 863
Tru1I TTAA 2 cut(s) 294, 315
Tru9I TTAA 2 cut(s) 294, 315
TscAI CASTG 4 cut(s) 64, 963, 1039, 1047
TseFI GTSAC 1 cut(s) 1038
TseI GCWGC 2 cut(s) 746, 1024
Tsp45I GTSAC 1 cut(s) 1038
TspDTI ATGAA 3 cut(s) 100, 942, 1067
TspRI CASTG 4 cut(s) 64, 963, 1039, 1047
Vha464I CTTAAG 1 cut(s) 314
XceI RCATGY 1 cut(s) 1009
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 3 cut(s) 144, 843, 1128
ZrmI AGTACT 1 cut(s) 638
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.