RLG00000034126

C2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006102
Physical Location & Seq
Forward (+)
37088556 .. 37091162
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034126

Sequence Viewer

Length: 1347 bp
ATGTTTTATGTCCCACCAAGAAGCGCACTCAACTCTTGTGTGATTGCTGCAATTTCAAGGTTTCCTTTCCTGGGTGTTTCCATGGATTCCCCTCAATCTGTTGTGTCTCCGTTCAAAACCTCTGTTGTTTCTGAGCCTGAGAAGCAGAAATCTGACTGTTCTGTTCACACCAACTCTGGACCATGTTCTAATGGAATTGAGGCCAATAGACAGGAAACCAATGTTTGTAATGTAGAGGACTTCATTGGTGTTCTTGAGGTGTATGTTCATCAGGCTAGGGACATCCACAACATCTGCATTTACCACAAGCAAGATGTCTATGCTAAGCTGTGCCTGACAAGTGATCCAGAAATTACAGTATCCACCAAAACCATTAATGGTGGTGGTCAAAATCCAGTCTTCAATGACAAGGTCCAGCTCAATGTTCGGACTGTTGATGGCTCCGTCAAATGCGAGATTTGGATGCTGAGCAGGGTGAAGAATTATCTTGAAGATCAGTTGCTGGGGTTTGCTTTGGTGCCTATGTCAGAGGTCCTCATCAAGAATGGGAAGTTAGAGAAAGAGTTCTCTCTTTCTTCAAACGATCTCTTTCATTCCCCAGCAGGGTTTGTGAAATTGTCTCTCTCTTATGCTGGAGATTCACCAGAAGTGATGTCCTTGCCTTCAAATCCTATTATGGAGGACACAGAGATAACTGATTCTGTTCCTTGTGAAGAATTAGATAAGATAGAGTTCCCAGACCCGGATATTGCCAATGAAGACCAGCTGATGGTTTCAGAGTATATTAAGATCCCATGTTCGGAGTTTGAGTCTCAGAGCTCCGAGAGTTTTGTCACTGCTGATTGTGAAACTCATGTTAGTTCTGAAGTGGGCGTTCAAGCAGTAGAAAGCGTTTCGACTGCTGCATTTGGATCTATTCAGGCTCAGAAGCTTGACTCTCCCCCAAGCAGTGTGTCAACTAATGCGGTTTCATCTCCATCTGTCCAGGCAAGCTCAGAGTCATCTGACGCTCCTGCATCTCCAAATCAGGAACAAGGTTCGGCCTCAGAAGAGAAAAAGGCAGATCGTAAAGATGGCGAGACTGATTCATCTGGTGGGTTGCCAAGTGATACAACCTCAAAACCTGTCGTCACTGTCAATGTTCCAGAGCAAAATGTGGTGCAGCAGGATTTTGTAGACATGTACATGAAAAGCATGCAGCAATTTACTGAGTCTTTGGCTAAGATGAAGCTTCCTTTGGACATTGAATCACCAACTAGTTCAGGAAATTCGAGCTCTGATCAGAATTTATCGACACCAAAGACAAATGGCTCTCGTGTGTTTTATGGGAGTAGAGCTTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

449

Amino Acids

48.55

Weight (kDa)

4.51

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 83 - 186 2.4e-09 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 517
AccB7I CCANNNNNTGG 1 cut(s) 769
AccI GTMKAC 1 cut(s) 1176
AciI CCGC 1 cut(s) 965
AclWI GGATC 3 cut(s) 338, 784, 919
AcsI RAATTY 2 cut(s) 1267, 1285
AcuI CTGAAG 1 cut(s) 885
AfaI GTAC 1 cut(s) 1184
AfiI CCNNNNNNNGG 5 cut(s) 71, 603, 742, 769, 799
AflIII ACRYGT 1 cut(s) 1179
AgsI TTSAA 8 cut(s) 57, 115, 403, 491, 579, 666, 878, 1247
AhlI ACTAGT 1 cut(s) 1256
AjnI CCWGG 2 cut(s) 69, 984
AjuI GAANNNNNNNTTGG 2 cut(s) 1220, 1252
AluBI AGCT 9 cut(s) 328, 418, 766, 819, 931, 993, 1231, 1275, 1337
AluI AGCT 9 cut(s) 328, 418, 766, 819, 931, 993, 1231, 1275, 1337
Alw21I GWGCWC 2 cut(s) 821, 1277
Alw26I GTCTC 4 cut(s) 111, 624, 816, 1073
AlwI GGATC 3 cut(s) 338, 784, 919
AlwNI CAGNNNCTG 1 cut(s) 502
AoxI GGCC 2 cut(s) 201, 1041
ApeKI GCWGC 4 cut(s) 47, 902, 1162, 1198
ApoI RAATTY 2 cut(s) 1267, 1285
AseI ATTAAT 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 563
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 179, 412, 532
AsuC2I CCSGG 1 cut(s) 743
AsuHPI GGTGA 3 cut(s) 487, 633, 1242
AvaII GGWCC 3 cut(s) 179, 412, 532
BanI GGYRCC 1 cut(s) 517
BanII GRGCYC 2 cut(s) 821, 1277
BauI CACGAG 1 cut(s) 1314
BbsI GAAGAC 2 cut(s) 391, 765
Bbv12I GWGCWC 2 cut(s) 821, 1277
BbvI GCAGC 4 cut(s) 34, 889, 1174, 1210
BccI CCATC 4 cut(s) 431, 763, 985, 1067
BciT130I CCWGG 2 cut(s) 71, 986
BciVI GTATCC 1 cut(s) 370
BclI TGATCA 1 cut(s) 1279
BcnI CCSGG 1 cut(s) 743
BcoDI GTCTC 4 cut(s) 111, 624, 816, 1073
BcuI ACTAGT 1 cut(s) 1256
BfaI CTAG 2 cut(s) 276, 1257
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 4 cut(s) 48, 903, 1163, 1199
BlpI GCTNAGC 2 cut(s) 324, 467
BlsI GCNGC 4 cut(s) 49, 904, 1164, 1200
Bme1390I CCNGG 3 cut(s) 71, 743, 986
Bme18I GGWCC 3 cut(s) 179, 412, 532
BmgT120I GGNCC 3 cut(s) 179, 412, 532
BmiI GGNNCC 2 cut(s) 442, 519
BmrFI CCNGG 3 cut(s) 71, 743, 986
BmsI GCATC 2 cut(s) 453, 1025
BpiI GAAGAC 2 cut(s) 391, 765
BpmI CTGGAG 1 cut(s) 654
Bpu1102I GCTNAGC 2 cut(s) 324, 467
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 743
BsaJI CCNNGG 2 cut(s) 70, 81
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 603, 742, 769, 799
Bse1I ACTGG 1 cut(s) 395
BseBI CCWGG 2 cut(s) 71, 986
BseDI CCNNGG 2 cut(s) 70, 81
BseGI GGATG 2 cut(s) 282, 468
BseLI CCNNNNNNNGG 5 cut(s) 71, 603, 742, 769, 799
BseMII CTCAG 8 cut(s) 123, 129, 458, 827, 938, 1008, 1059, 1200
BseNI ACTGG 1 cut(s) 395
BseXI GCAGC 4 cut(s) 34, 889, 1174, 1210
BseYI CCCAGC 2 cut(s) 502, 598
BsgI GTGCAG 1 cut(s) 1181
BshFI GGCC 2 cut(s) 203, 1043
BshNI GGYRCC 1 cut(s) 517
BsiHKAI GWGCWC 2 cut(s) 821, 1277
BsiSI CCGG 1 cut(s) 743
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 5 cut(s) 71, 603, 742, 769, 799
BsmAI GTCTC 4 cut(s) 111, 624, 816, 1073
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 2 cut(s) 203, 1043
Bsp1286I GDGCHC 2 cut(s) 821, 1277
Bsp1407I TGTACA 1 cut(s) 1182
Bsp143I GATC 7 cut(s) 343, 493, 583, 789, 911, 1063, 1279
Bsp1720I GCTNAGC 2 cut(s) 324, 467
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 1 cut(s) 965
BspANI GGCC 2 cut(s) 203, 1043
BspCNI CTCAG 8 cut(s) 124, 130, 459, 826, 937, 1007, 1058, 1201
BspLI GGNNCC 2 cut(s) 442, 519
BspPI GGATC 3 cut(s) 338, 784, 919
BspT107I GGYRCC 1 cut(s) 517
BsrGI TGTACA 1 cut(s) 1182
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 70, 81
BssMI GATC 7 cut(s) 343, 493, 583, 789, 911, 1063, 1279
BssSI CACGAG 1 cut(s) 1314
BssT1I CCWWGG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 1314
Bst2UI CCWGG 2 cut(s) 71, 986
Bst4CI ACNGT 4 cut(s) 158, 358, 433, 1135
Bst6I CTCTTC 1 cut(s) 1044
BstAUI TGTACA 1 cut(s) 1182
BstC8I GCNNGC 2 cut(s) 991, 1196
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 282, 468
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 7 cut(s) 346, 496, 586, 792, 914, 1066, 1282
BstMAI GTCTC 4 cut(s) 111, 624, 816, 1073
BstMBI GATC 7 cut(s) 343, 493, 583, 789, 911, 1063, 1279
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 2 cut(s) 71, 986
BstNSI RCATGY 2 cut(s) 1183, 1198
BstSCI CCNGG 3 cut(s) 69, 741, 984
BstV1I GCAGC 4 cut(s) 34, 889, 1174, 1210
BstV2I GAAGAC 2 cut(s) 391, 765
BstX2I RGATCY 2 cut(s) 789, 911
BstYI RGATCY 2 cut(s) 789, 911
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 2 cut(s) 203, 1043
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 282, 468
BtsI GCAGTG 2 cut(s) 834, 955
BtsIMutI CAGTG 3 cut(s) 834, 955, 1131
Cac8I GCNNGC 2 cut(s) 991, 1196
CaiI CAGNNNCTG 1 cut(s) 502
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 179, 412, 532
CseI GACGC 1 cut(s) 1016
Csp6I GTAC 1 cut(s) 1183
CviAII CATG 7 cut(s) 82, 183, 795, 854, 1180, 1186, 1195
CviQI GTAC 1 cut(s) 1183
DpnI GATC 7 cut(s) 345, 495, 585, 791, 913, 1065, 1281
DpnII GATC 7 cut(s) 343, 493, 583, 789, 911, 1063, 1279
Eam1104I CTCTTC 1 cut(s) 1044
EarI CTCTTC 1 cut(s) 1044
Ecl136II GAGCTC 2 cut(s) 819, 1275
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 2 cut(s) 821, 1277
Eco47I GGWCC 3 cut(s) 179, 412, 532
Eco53kI GAGCTC 2 cut(s) 819, 1275
Eco57I CTGAAG 1 cut(s) 885
EcoICRI GAGCTC 2 cut(s) 819, 1275
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 2 cut(s) 69, 984
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 2 cut(s) 821, 1277
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 7 cut(s) 85, 186, 798, 857, 1183, 1189, 1198
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 1 cut(s) 293
FatI CATG 7 cut(s) 81, 182, 794, 853, 1179, 1185, 1194
FbaI TGATCA 1 cut(s) 1279
FblI GTMKAC 1 cut(s) 1176
Fnu4HI GCNGC 4 cut(s) 48, 903, 1163, 1199
FokI GGATG 2 cut(s) 269, 475
FriOI GRGCYC 2 cut(s) 821, 1277
Fsp4HI GCNGC 4 cut(s) 48, 903, 1163, 1199
FspBI CTAG 2 cut(s) 276, 1257
GlaI GCGC 1 cut(s) 25
GluI GCNGC 4 cut(s) 48, 903, 1163, 1199
GsaI CCCAGC 2 cut(s) 506, 602
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 2 cut(s) 203, 1043
HapII CCGG 1 cut(s) 743
HgaI GACGC 1 cut(s) 1016
HhaI GCGC 1 cut(s) 26
Hin1II CATG 7 cut(s) 85, 186, 798, 857, 1183, 1189, 1198
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 1 cut(s) 957
HindII GTYRAC 1 cut(s) 957
HindIII AAGCTT 2 cut(s) 929, 1229
HinfI GANTC 9 cut(s) 86, 638, 698, 809, 935, 998, 1085, 1211, 1247
HpaII CCGG 1 cut(s) 743
HphI GGTGA 3 cut(s) 487, 633, 1242
Hpy166II GTNNAC 3 cut(s) 166, 957, 1177
Hpy188III TCNNGA 8 cut(s) 177, 254, 347, 488, 541, 1028, 1145, 1263
Hpy8I GTNNAC 3 cut(s) 166, 957, 1177
HpyAV CCTTC 1 cut(s) 672
HpyCH4III ACNGT 4 cut(s) 158, 358, 433, 1135
HpyCH4V TGCA 6 cut(s) 50, 297, 905, 1016, 1162, 1198
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
Hsp92II CATG 7 cut(s) 85, 186, 798, 857, 1183, 1189, 1198
HspAI GCGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 1279
Kzo9I GATC 7 cut(s) 343, 493, 583, 789, 911, 1063, 1279
LmnI GCTCC 3 cut(s) 446, 824, 1015
Lsp1109I GCAGC 4 cut(s) 34, 889, 1174, 1210
LweI GCATC 2 cut(s) 453, 1025
MaeI CTAG 2 cut(s) 276, 1257
MaeIII GTNAC 2 cut(s) 832, 1129
MalI GATC 7 cut(s) 345, 495, 585, 791, 913, 1065, 1281
MboI GATC 7 cut(s) 343, 493, 583, 789, 911, 1063, 1279
MboII GAAGA 8 cut(s) 391, 490, 503, 567, 725, 770, 1061, 1333
MflI RGATCY 2 cut(s) 789, 911
MhlI GDGCHC 2 cut(s) 821, 1277
MluCI AATT 9 cut(s) 51, 195, 351, 481, 614, 716, 1202, 1267, 1285
MlyI GAGTC 4 cut(s) 818, 929, 1007, 1220
MroXI GAANNNNTTC 1 cut(s) 563
MseI TTAA 2 cut(s) 375, 786
MslI CAYNNNNRTG 1 cut(s) 1184
MspA1I CMGCKG 1 cut(s) 766
MspI CCGG 1 cut(s) 743
MspR9I CCNGG 3 cut(s) 71, 743, 986
MvaI CCWGG 2 cut(s) 71, 986
MwoI GCNNNNNNNGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 743
NcoI CCATGG 1 cut(s) 81
NdeII GATC 7 cut(s) 343, 493, 583, 789, 911, 1063, 1279
NlaIII CATG 7 cut(s) 85, 186, 798, 857, 1183, 1189, 1198
NlaIV GGNNCC 2 cut(s) 442, 519
NmuCI GTSAC 2 cut(s) 832, 1129
NspI RCATGY 2 cut(s) 1183, 1198
PaeI GCATGC 1 cut(s) 1198
PciI ACATGT 1 cut(s) 1179
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 5 cut(s) 86, 638, 698, 1085, 1247
PflFI GACNNNGTC 1 cut(s) 410
PflMI CCANNNNNTGG 1 cut(s) 769
PkrI GCNGC 4 cut(s) 49, 904, 1164, 1200
PleI GAGTC 4 cut(s) 817, 929, 1006, 1219
PpsI GAGTC 4 cut(s) 817, 929, 1006, 1219
PpuMI RGGWCCY 1 cut(s) 532
PscI ACATGT 1 cut(s) 1179
PshBI ATTAAT 1 cut(s) 375
Psp124BI GAGCTC 2 cut(s) 821, 1277
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 2 cut(s) 69, 984
PspFI CCCAGC 2 cut(s) 502, 598
PspGI CCWGG 2 cut(s) 69, 984
PspN4I GGNNCC 2 cut(s) 442, 519
PspPI GGNCC 3 cut(s) 179, 412, 532
PspPPI RGGWCCY 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 502
PsuI RGATCY 2 cut(s) 789, 911
PsyI GACNNNGTC 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 766
RsaI GTAC 1 cut(s) 1184
RsaNI GTAC 1 cut(s) 1183
RseI CAYNNNNRTG 1 cut(s) 1184
SacI GAGCTC 2 cut(s) 821, 1277
SaqAI TTAA 2 cut(s) 375, 786
SatI GCNGC 4 cut(s) 48, 903, 1163, 1199
Sau3AI GATC 7 cut(s) 343, 493, 583, 789, 911, 1063, 1279
Sau96I GGNCC 3 cut(s) 179, 412, 532
SchI GAGTC 4 cut(s) 818, 929, 1007, 1220
ScrFI CCNGG 3 cut(s) 71, 743, 986
SduI GDGCHC 2 cut(s) 821, 1277
SfaNI GCATC 2 cut(s) 453, 1025
SinI GGWCC 3 cut(s) 179, 412, 532
SmiMI CAYNNNNRTG 1 cut(s) 1184
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 1256
SphI GCATGC 1 cut(s) 1198
Sse9I AATT 9 cut(s) 51, 195, 351, 481, 614, 716, 1202, 1267, 1285
SsiI CCGC 1 cut(s) 965
SspMI CTAG 2 cut(s) 276, 1257
SstI GAGCTC 2 cut(s) 821, 1277
StyD4I CCNGG 3 cut(s) 69, 741, 984
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 4 cut(s) 158, 358, 433, 1135
TaqI TCGA 3 cut(s) 896, 1271, 1292
TasI AATT 9 cut(s) 51, 195, 351, 481, 614, 716, 1202, 1267, 1285
TatI WGTACW 1 cut(s) 1182
TfiI GAWTC 5 cut(s) 86, 638, 698, 1085, 1247
Tru1I TTAA 2 cut(s) 375, 786
Tru9I TTAA 2 cut(s) 375, 786
TscAI CASTG 3 cut(s) 841, 955, 1138
TseFI GTSAC 2 cut(s) 832, 1129
TseI GCWGC 4 cut(s) 47, 902, 1162, 1198
Tsp45I GTSAC 2 cut(s) 832, 1129
TspDTI ATGAA 8 cut(s) 232, 257, 581, 771, 960, 1077, 1202, 1241
TspGWI ACGGA 2 cut(s) 99, 433
TspRI CASTG 3 cut(s) 841, 955, 1138
Tth111I GACNNNGTC 1 cut(s) 410
Van91I CCANNNNNTGG 1 cut(s) 769
VpaK11BI GGWCC 3 cut(s) 179, 412, 532
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 2 cut(s) 1267, 1285
XceI RCATGY 2 cut(s) 1183, 1198
XmiI GTMKAC 1 cut(s) 1176
XmnI GAANNNNTTC 1 cut(s) 563
XspI CTAG 2 cut(s) 276, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.