pycom11g17860

C2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0006102
Physical Location & Seq
Reverse (-)
20184939 .. 20185976
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g17860.1

Sequence Viewer

Length: 963 bp
ATGCTGAGCAGGGTCAAGAATTATCTTGAAGATCAGTTGCTGGGGTTTTCTTTGGTGCCTTTGTCGGAGGTCTTCGTTAAGAATGGGAAGTTAGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTGTTTCATTTCCCAGCAGGGTTTGTCCAGTTGTCCCTCTCGTACACTGGAGATATCCCAGAAGTAATGTCCCTGGCCTCAAATCCTATTGTGCAGGACTCGGAGACAGCTGAGTCACGTGAATTAGATAGGTTAGAGTTCCCAGATCCGAACATTGACAATGAAGACCAGAGAATGGTTTCAGAGTACATTAAGTTCCCATGTTCTGAATTTGAGTCTCAAAGCTCTGAGAGCTTTGTCATTGCTGACTCTGAAACTCAGGTTATTTCCGAAGTGGGTATTCATGCTGTTGAAAGTTTCTCGACTGCTACTATTGAATCTACTCCTGTTCGGAAGCTTGATTCTCCCCCAAGCAGTGTGTCAACTAATGGTGTTTCATCTCCATCGGGTCATACAAGCTCAGAGTCGTATGATGCTCCATCAGCTGTGAAATCTCCAAACCACGAACAAGTTTTGGCGGTGGAAGAGAAAAAGGTGGATAAAGATGAAGAGATTAATTCGTCTGGTGGGGTGCCAAGTGAGACATTTGAGAATCCTACTGTCACAGTCACCACCGTTCCAGAGCAAACGGCGAATCCTACTGTCACAGTGACCGTTCCAGAGAATACGGCGAATCCTACTATCACAGTCACTGTTCCAGAGCATACGGCGGTGCAGCAGGATTTTGTAGACATGTACATGAAAAGCATGCAGCAATTCACCGAGTCCTTGGCAAAAATGAAGCTTCCGTTGGACCTTGAATCACCAACCAATTCAGGAAACTCGAGCACTGATCAGAAAATAGAGACACCAAAGAGCAGTGGTTCCCGGGTGTTTTATGGCAGTAGGGCTTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

321

Amino Acids

34.98

Weight (kDa)

4.41

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 235
AccB1I GGYRCC 2 cut(s) 55, 634
AccB7I CCANNNNNTGG 1 cut(s) 298
AccI GTMKAC 1 cut(s) 792
AciI CCGC 2 cut(s) 581, 773
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 332
AcvI CACGTG 1 cut(s) 242
AfaI GTAC 3 cut(s) 167, 311, 800
AfiI CCNNNNNNNGG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 5 cut(s) 29, 117, 416, 440, 863
AjnI CCWGG 1 cut(s) 195
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
AluBI AGCT 7 cut(s) 233, 348, 357, 460, 522, 548, 847
AluI AGCT 7 cut(s) 233, 348, 357, 460, 522, 548, 847
Alw21I GWGCWC 1 cut(s) 893
Alw26I GTCTC 4 cut(s) 221, 345, 638, 902
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 2 cut(s) 40, 755
Ama87I CYCGRG 2 cut(s) 886, 930
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 2 cut(s) 778, 814
ApoI RAATTY 1 cut(s) 332
AseI ATTAAT 1 cut(s) 618
Asp700I GAANNNNTTC 2 cut(s) 101, 301
AspS9I GGNCC 1 cut(s) 856
AsuC2I CCSGG 2 cut(s) 931, 932
AsuHPI GGTGA 3 cut(s) 664, 814, 858
AvaI CYCGRG 2 cut(s) 886, 930
AvaII GGWCC 1 cut(s) 856
BanI GGYRCC 2 cut(s) 55, 634
BbrPI CACGTG 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 64, 294
Bbv12I GWGCWC 1 cut(s) 893
BbvI GCAGC 2 cut(s) 790, 826
BccI CCATC 2 cut(s) 514, 550
BceAI ACGGC 3 cut(s) 708, 747, 786
BciT130I CCWGG 1 cut(s) 197
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 2 cut(s) 931, 932
BcoDI GTCTC 4 cut(s) 221, 345, 638, 902
BisI GCNGC 2 cut(s) 779, 815
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 2 cut(s) 780, 816
Bme1390I CCNGG 3 cut(s) 197, 931, 932
Bme18I GGWCC 1 cut(s) 856
BmeT110I CYCGRG 2 cut(s) 886, 930
BmgT120I GGNCC 1 cut(s) 856
BmiI GGNNCC 3 cut(s) 57, 636, 928
BmrFI CCNGG 3 cut(s) 197, 931, 932
BmsI GCATC 1 cut(s) 526
BpiI GAAGAC 2 cut(s) 64, 294
BpmI CTGGAG 1 cut(s) 192
Bpu1102I GCTNAGC 1 cut(s) 5
BpuMI CCSGG 2 cut(s) 931, 932
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 195, 831, 930
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 151, 175
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 3 cut(s) 195, 831, 930
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 4 cut(s) 225, 342, 395, 537
BseNI ACTGG 2 cut(s) 151, 175
BseXI GCAGC 2 cut(s) 790, 826
BseYI CCCAGC 2 cut(s) 40, 136
BsgI GTGCAG 2 cut(s) 236, 797
BshFI GGCC 1 cut(s) 200
BshNI GGYRCC 2 cut(s) 55, 634
BsiHKAI GWGCWC 1 cut(s) 893
BsiHKCI CYCGRG 2 cut(s) 886, 930
BsiSI CCGG 1 cut(s) 931
BslFI GGGAC 2 cut(s) 142, 178
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 4 cut(s) 221, 345, 638, 902
BsmFI GGGAC 2 cut(s) 142, 178
BsnI GGCC 1 cut(s) 200
BsoBI CYCGRG 2 cut(s) 886, 930
Bsp1286I GDGCHC 1 cut(s) 893
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 4 cut(s) 31, 121, 268, 895
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 2 cut(s) 581, 773
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 4 cut(s) 226, 343, 394, 536
BspLI GGNNCC 3 cut(s) 57, 636, 928
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 2 cut(s) 55, 634
BsrDI GCAATG 1 cut(s) 363
BsrGI TGTACA 1 cut(s) 798
BsrI ACTGG 2 cut(s) 151, 175
BssECI CCNNGG 3 cut(s) 195, 831, 930
BssMI GATC 4 cut(s) 31, 121, 268, 895
BssT1I CCWWGG 1 cut(s) 831
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 8 cut(s) 664, 670, 679, 706, 712, 718, 751, 757
Bst6I CTCTTC 2 cut(s) 582, 606
BstAUI TGTACA 1 cut(s) 798
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 812
BstDEI CTNAG 5 cut(s) 5, 234, 351, 381, 523
BstKTI GATC 4 cut(s) 34, 124, 271, 898
BstMAI GTCTC 4 cut(s) 221, 345, 638, 902
BstMBI GATC 4 cut(s) 31, 121, 268, 895
BstMWI GCNNNNNNNGC 2 cut(s) 354, 545
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 2 cut(s) 799, 814
BstSCI CCNGG 3 cut(s) 195, 929, 930
BstV1I GCAGC 2 cut(s) 790, 826
BstV2I GAAGAC 2 cut(s) 64, 294
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 200
BtsI GCAGTG 2 cut(s) 484, 928
BtsIMutI CAGTG 6 cut(s) 168, 484, 717, 753, 891, 928
Cac8I GCNNGC 1 cut(s) 812
CaiI CAGNNNCTG 2 cut(s) 40, 755
Cfr13I GGNCC 1 cut(s) 856
Cfr9I CCCGGG 1 cut(s) 930
Csp6I GTAC 3 cut(s) 166, 310, 799
CviAII CATG 5 cut(s) 324, 407, 796, 802, 811
CviJI RGCY 9 cut(s) 200, 233, 348, 357, 460, 522, 548, 847, 953
CviKI_1 RGCY 9 cut(s) 200, 233, 348, 357, 460, 522, 548, 847, 953
CviQI GTAC 3 cut(s) 166, 310, 799
DdeI CTNAG 5 cut(s) 5, 234, 351, 381, 523
DpnI GATC 4 cut(s) 33, 123, 270, 897
DpnII GATC 4 cut(s) 31, 121, 268, 895
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 582, 606
EarI CTCTTC 2 cut(s) 582, 606
Eco130I CCWWGG 1 cut(s) 831
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 856
Eco72I CACGTG 1 cut(s) 242
Eco88I CYCGRG 2 cut(s) 886, 930
EcoRII CCWGG 1 cut(s) 195
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 831
ErhI CCWWGG 1 cut(s) 831
FaeI CATG 5 cut(s) 327, 410, 799, 805, 814
FaiI YATR 9 cut(s) 325, 408, 516, 534, 768, 797, 803, 812, 942
FaqI GGGAC 2 cut(s) 142, 178
FatI CATG 5 cut(s) 323, 406, 795, 801, 810
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 2 cut(s) 779, 815
Fsp4HI GCNGC 2 cut(s) 779, 815
GluI GCNGC 2 cut(s) 779, 815
GsaI CCCAGC 2 cut(s) 44, 140
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 200
HapII CCGG 1 cut(s) 931
Hin1II CATG 5 cut(s) 327, 410, 799, 805, 814
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 2 cut(s) 458, 845
HpaII CCGG 1 cut(s) 931
HphI GGTGA 3 cut(s) 664, 814, 858
Hpy166II GTNNAC 3 cut(s) 168, 486, 793
Hpy188III TCNNGA 7 cut(s) 16, 26, 424, 683, 722, 761, 879
Hpy8I GTNNAC 3 cut(s) 168, 486, 793
HpyCH4III ACNGT 8 cut(s) 664, 670, 679, 706, 712, 718, 751, 757
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 217, 778, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 545
HpyF3I CTNAG 5 cut(s) 5, 234, 351, 381, 523
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 5 cut(s) 327, 410, 799, 805, 814
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 4 cut(s) 31, 121, 268, 895
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 2 cut(s) 790, 826
LweI GCATC 1 cut(s) 526
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 6 cut(s) 237, 664, 670, 706, 712, 751
MalI GATC 4 cut(s) 33, 123, 270, 897
MboI GATC 4 cut(s) 31, 121, 268, 895
MboII GAAGA 7 cut(s) 41, 64, 105, 299, 599, 623, 949
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 893
MluCI AATT 6 cut(s) 19, 245, 332, 619, 818, 874
MlyI GAGTC 6 cut(s) 215, 245, 347, 365, 536, 836
MmeI TCCRAC 2 cut(s) 45, 834
MnlI CCTC 3 cut(s) 61, 170, 211
MroXI GAANNNNTTC 2 cut(s) 101, 301
MseI TTAA 3 cut(s) 78, 315, 618
MslI CAYNNNNRTG 1 cut(s) 800
MspA1I CMGCKG 2 cut(s) 233, 548
MspI CCGG 1 cut(s) 931
MspR9I CCNGG 3 cut(s) 197, 931, 932
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 354, 545
NciI CCSGG 2 cut(s) 931, 932
NdeII GATC 4 cut(s) 31, 121, 268, 895
NlaIII CATG 5 cut(s) 327, 410, 799, 805, 814
NlaIV GGNNCC 3 cut(s) 57, 636, 928
NmuCI GTSAC 6 cut(s) 237, 664, 670, 706, 712, 751
NspI RCATGY 2 cut(s) 799, 814
PaeI GCATGC 1 cut(s) 814
PaeR7I CTCGAG 1 cut(s) 886
PciI ACATGT 1 cut(s) 795
PdmI GAANNNNTTC 2 cut(s) 101, 301
PfeI GAWTC 6 cut(s) 440, 464, 655, 697, 736, 863
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 2 cut(s) 780, 816
PleI GAGTC 6 cut(s) 215, 244, 346, 365, 535, 835
PmaCI CACGTG 1 cut(s) 242
PmlI CACGTG 1 cut(s) 242
PpsI GAGTC 6 cut(s) 215, 244, 346, 365, 535, 835
Ppu21I YACGTR 1 cut(s) 242
PscI ACATGT 1 cut(s) 795
PshBI ATTAAT 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 195
PspCI CACGTG 1 cut(s) 242
PspFI CCCAGC 2 cut(s) 40, 136
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 3 cut(s) 57, 636, 928
PspPI GGNCC 1 cut(s) 856
PspXI VCTCGAGB 1 cut(s) 886
PsrI GAACNNNNNNTAC 2 cut(s) 302, 334
PstNI CAGNNNCTG 2 cut(s) 40, 755
PsuI RGATCY 1 cut(s) 268
PvuII CAGCTG 2 cut(s) 233, 548
RsaI GTAC 3 cut(s) 167, 311, 800
RsaNI GTAC 3 cut(s) 166, 310, 799
RseI CAYNNNNRTG 1 cut(s) 800
SaqAI TTAA 3 cut(s) 78, 315, 618
SatI GCNGC 2 cut(s) 779, 815
Sau3AI GATC 4 cut(s) 31, 121, 268, 895
Sau96I GGNCC 1 cut(s) 856
SchI GAGTC 6 cut(s) 215, 245, 347, 365, 536, 836
ScrFI CCNGG 3 cut(s) 197, 931, 932
SduI GDGCHC 1 cut(s) 893
SfaNI GCATC 1 cut(s) 526
Sfr274I CTCGAG 1 cut(s) 886
SinI GGWCC 1 cut(s) 856
SlaI CTCGAG 1 cut(s) 886
SmaI CCCGGG 1 cut(s) 932
SmiMI CAYNNNNRTG 1 cut(s) 800
SmlI CTYRAG 1 cut(s) 886
SmoI CTYRAG 1 cut(s) 886
SphI GCATGC 1 cut(s) 814
Sse9I AATT 6 cut(s) 19, 245, 332, 619, 818, 874
SsiI CCGC 2 cut(s) 581, 773
StyD4I CCNGG 3 cut(s) 195, 929, 930
StyI CCWWGG 1 cut(s) 831
TaaI ACNGT 8 cut(s) 664, 670, 679, 706, 712, 718, 751, 757
TaiI ACGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 425, 887
TasI AATT 6 cut(s) 19, 245, 332, 619, 818, 874
TatI WGTACW 2 cut(s) 309, 798
TfiI GAWTC 6 cut(s) 440, 464, 655, 697, 736, 863
Tru1I TTAA 3 cut(s) 78, 315, 618
Tru9I TTAA 3 cut(s) 78, 315, 618
TscAI CASTG 6 cut(s) 175, 484, 717, 760, 898, 928
TseFI GTSAC 6 cut(s) 237, 664, 670, 706, 712, 751
TseI GCWGC 2 cut(s) 778, 814
Tsp45I GTSAC 6 cut(s) 237, 664, 670, 706, 712, 751
TspDTI ATGAA 7 cut(s) 119, 300, 395, 489, 624, 818, 857
TspGWI ACGGA 1 cut(s) 840
TspMI CCCGGG 1 cut(s) 930
TspRI CASTG 6 cut(s) 175, 484, 717, 760, 898, 928
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 856
VspI ATTAAT 1 cut(s) 618
XapI RAATTY 1 cut(s) 332
XceI RCATGY 2 cut(s) 799, 814
XhoI CTCGAG 1 cut(s) 886
XmaI CCCGGG 1 cut(s) 930
XmiI GTMKAC 1 cut(s) 792
XmnI GAANNNNTTC 2 cut(s) 101, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.