Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002779.1

Orthogroup ID

OG0006102

Physical Location & Seq

Genomic Coordinates Reverse (-)

20458 .. 21723

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002779.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atggattcccctcaatctgttgtgtctccgttcaaaacctctgttgtttctgagcttgagaagcagaaatctgactgttctgttcacaccaactctggatcatgttctaatggaattgaggccaatagacaggaaaccaatgtttgtaatgtagaggacttcattggtgttcttgaggtgtatgttcatcaggctagggacatccataacatctgcatttaccacaagcaagatgtctatgctaagctgtacctgacaagtgatccagaaattacagtatccaccaaaaccattaatggtggtggtcaaaatccagtcttcaatgacaaggtccagctcaatgttcggactgttgatggctccgtcaaatgcgagatttggatgctgagcagggtgaagaattatcttgaagatcagttgctggggtttgctttggtgcctatgtcagaggtcctcatcaagaatgggaagttagagaaagagttctctctttcttcaaatgatctctttcattccccagcagggtttgtgaaattgtctctttcttatgctggagattcaccagaagtgatgtccttgccttcaaatcctattatggaggacacagagataactgattctgttccttgtgaagaattagataagatagagttcccagacccggatattgccaatgaagaccagctgatggtttcagagtatattaagatcccatgttcggagtttgagtctcagagctctgagagttttgtcactgctgattgtgaaactcatgttagttctgaagtgggcgttcaagcagtagaaagcgtttcagctgctgcatttggatctattcaggctcagaagcttgactctcccccgagcagtgtgtcaacaaatggggtttcatctccatctgtccaggccagctcagagtcatctgatgctcctgcatctccaaatcaggaacaagtttcggcctcagaagagaaaaaggcagatcgtaaagatggcgagactgattcatctggtggggtgccaagtgatacaacctcaaaacctgtcgtcactgtcaatgttccagagcaaaatgtggtgcagcaggattttgtagacatgtacatgaaaagcatgcagcaatttaccgagtctttggctaagatgaagcttcctttggacattgaatcaccaactagttcaggaaattcgagctctgatcagaatttatcaacaccaaagacaaatggctctcgtgtgttttatgggagtagagctttcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

421

Amino Acids

45.68

Weight (kDa)

4.45

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50530 AT1G50570 AT1G50570 AT5G55530 AT5G55530 AT5G55530
fragaria_vesca	FvH4_3g23940 FvH4_3g23940 FvH4_3g23940 FvH4_3g23940 FvH4_3g23940
malus_domestica	MD03G1189600.v1.1 MD11G1205900.v1.1
prunus_persica	Prupe.4G231700_v2.0.a1 Prupe.4G231700_v2.0.a1
pyrus_communis	pycom11g17860
rosa_chinensis	RchiOBHm_Chr5g0042441
rosa_laevigata	RLG00000034126
rosa_multiflora	Rmu_sc0002779.1_g000006
rosa_roxburghii	Rroxscaffold_1G00038250
rosa_rugosa	Rorug05G0200100 Rorug05G0200200
rosa_samantha	Rh5AG286500 Rh5BG291000 Rh5CG323100 Rh5DG300700
rosa_wichuraiana	Rw5G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	436, 1018
AccB7I	CCANNNNNTGG	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	1095
AclWI	GGATC	4 cut(s)	106, 257, 703, 838
AcsI	RAATTY	2 cut(s)	1186, 1204
AcuI	CTGAAG	1 cut(s)	804
AfaI	GTAC	2 cut(s)	251, 1103
AfiI	CCNNNNNNNGG	4 cut(s)	522, 661, 688, 718
AflIII	ACRYGT	1 cut(s)	1098
AgsI	TTSAA	7 cut(s)	34, 322, 410, 498, 585, 797, 1166
AhlI	ACTAGT	1 cut(s)	1175
AjnI	CCWGG	1 cut(s)	903
AjuI	GAANNNNNNNTTGG	2 cut(s)	1139, 1171
Alw21I	GWGCWC	2 cut(s)	740, 1196
Alw26I	GTCTC	4 cut(s)	30, 543, 735, 992
AlwI	GGATC	4 cut(s)	106, 257, 703, 838
AlwNI	CAGNNNCTG	2 cut(s)	421, 821
Ama87I	CYCGRG	1 cut(s)	862
AoxI	GGCC	3 cut(s)	120, 906, 960
ApeKI	GCWGC	4 cut(s)	818, 821, 1081, 1117
ApoI	RAATTY	2 cut(s)	1186, 1204
AseI	ATTAAT	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	331, 451
AsuC2I	CCSGG	1 cut(s)	662
AsuHPI	GGTGA	3 cut(s)	406, 552, 1161
AvaI	CYCGRG	1 cut(s)	862
AvaII	GGWCC	2 cut(s)	331, 451
BanI	GGYRCC	2 cut(s)	436, 1018
BanII	GRGCYC	2 cut(s)	740, 1196
BauI	CACGAG	1 cut(s)	1233
BbsI	GAAGAC	2 cut(s)	310, 684
Bbv12I	GWGCWC	2 cut(s)	740, 1196
BbvI	GCAGC	4 cut(s)	805, 808, 1093, 1129
BccI	CCATC	4 cut(s)	350, 682, 904, 986
BciT130I	CCWGG	1 cut(s)	905
BciVI	GTATCC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	1198
BcnI	CCSGG	1 cut(s)	662
BcoDI	GTCTC	4 cut(s)	30, 543, 735, 992
BcuI	ACTAGT	1 cut(s)	1175
BfaI	CTAG	2 cut(s)	195, 1176
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	4 cut(s)	819, 822, 1082, 1118
BlpI	GCTNAGC	2 cut(s)	243, 386
BlsI	GCNGC	4 cut(s)	820, 823, 1083, 1119
Bme1390I	CCNGG	2 cut(s)	662, 905
Bme18I	GGWCC	2 cut(s)	331, 451
BmeT110I	CYCGRG	1 cut(s)	862
BmgT120I	GGNCC	2 cut(s)	331, 451
BmiI	GGNNCC	3 cut(s)	361, 438, 1020
BmrFI	CCNGG	2 cut(s)	662, 905
BmsI	GCATC	3 cut(s)	372, 916, 944
BpiI	GAAGAC	2 cut(s)	310, 684
BpmI	CTGGAG	1 cut(s)	573
Bpu1102I	GCTNAGC	2 cut(s)	243, 386
BpuEI	CTTGAG	2 cut(s)	77, 194
BpuMI	CCSGG	1 cut(s)	662
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	4 cut(s)	522, 661, 688, 718
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	905
BseGI	GGATG	2 cut(s)	201, 387
BseLI	CCNNNNNNNGG	4 cut(s)	522, 661, 688, 718
BseMII	CTCAG	7 cut(s)	42, 377, 732, 746, 857, 927, 978
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	4 cut(s)	805, 808, 1093, 1129
BseYI	CCCAGC	2 cut(s)	421, 517
BsgI	GTGCAG	1 cut(s)	1100
BshFI	GGCC	3 cut(s)	122, 908, 962
BshNI	GGYRCC	2 cut(s)	436, 1018
BsiHKAI	GWGCWC	2 cut(s)	740, 1196
BsiHKCI	CYCGRG	1 cut(s)	862
BsiSI	CCGG	1 cut(s)	662
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	522, 661, 688, 718
BsmAI	GTCTC	4 cut(s)	30, 543, 735, 992
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	122, 908, 962
BsoBI	CYCGRG	1 cut(s)	862
Bsp1286I	GDGCHC	2 cut(s)	740, 1196
Bsp1407I	TGTACA	1 cut(s)	1101
Bsp143I	GATC	8 cut(s)	98, 262, 412, 502, 708, 830, 982, 1198
Bsp1720I	GCTNAGC	2 cut(s)	243, 386
BspANI	GGCC	3 cut(s)	122, 908, 962
BspCNI	CTCAG	7 cut(s)	43, 378, 733, 745, 856, 926, 977
BspLI	GGNNCC	3 cut(s)	361, 438, 1020
BspPI	GGATC	4 cut(s)	106, 257, 703, 838
BspT107I	GGYRCC	2 cut(s)	436, 1018
BsrGI	TGTACA	1 cut(s)	1101
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	8 cut(s)	98, 262, 412, 502, 708, 830, 982, 1198
BssSI	CACGAG	1 cut(s)	1233
Bst2BI	CACGAG	1 cut(s)	1233
Bst2UI	CCWGG	1 cut(s)	905
Bst4CI	ACNGT	4 cut(s)	77, 277, 352, 1054
Bst6I	CTCTTC	1 cut(s)	963
BstAUI	TGTACA	1 cut(s)	1101
BstC8I	GCNNGC	2 cut(s)	910, 1115
BstDEI	CTNAG	9 cut(s)	51, 243, 386, 732, 741, 843, 913, 964, 1140
BstF5I	GGATG	2 cut(s)	201, 387
BstKTI	GATC	8 cut(s)	101, 265, 415, 505, 711, 833, 985, 1201
BstMAI	GTCTC	4 cut(s)	30, 543, 735, 992
BstMBI	GATC	8 cut(s)	98, 262, 412, 502, 708, 830, 982, 1198
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	905
BstNSI	RCATGY	2 cut(s)	1102, 1117
BstSCI	CCNGG	2 cut(s)	660, 903
BstV1I	GCAGC	4 cut(s)	805, 808, 1093, 1129
BstV2I	GAAGAC	2 cut(s)	310, 684
BstX2I	RGATCY	2 cut(s)	708, 830
BstYI	RGATCY	2 cut(s)	708, 830
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	122, 908, 962
BtsCI	GGATG	2 cut(s)	201, 387
BtsI	GCAGTG	2 cut(s)	753, 874
BtsIMutI	CAGTG	3 cut(s)	753, 874, 1050
Cac8I	GCNNGC	2 cut(s)	910, 1115
CaiI	CAGNNNCTG	2 cut(s)	421, 821
Cfr13I	GGNCC	2 cut(s)	331, 451
Csp6I	GTAC	2 cut(s)	250, 1102
CviAII	CATG	6 cut(s)	102, 714, 773, 1099, 1105, 1114
CviQI	GTAC	2 cut(s)	250, 1102
DdeI	CTNAG	9 cut(s)	51, 243, 386, 732, 741, 843, 913, 964, 1140
DpnI	GATC	8 cut(s)	100, 264, 414, 504, 710, 832, 984, 1200
DpnII	GATC	8 cut(s)	98, 262, 412, 502, 708, 830, 982, 1198
Eam1104I	CTCTTC	1 cut(s)	963
EarI	CTCTTC	1 cut(s)	963
Ecl136II	GAGCTC	2 cut(s)	738, 1194
Eco24I	GRGCYC	2 cut(s)	740, 1196
Eco47I	GGWCC	2 cut(s)	331, 451
Eco53kI	GAGCTC	2 cut(s)	738, 1194
Eco57I	CTGAAG	1 cut(s)	804
Eco88I	CYCGRG	1 cut(s)	862
EcoICRI	GAGCTC	2 cut(s)	738, 1194
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	903
EcoT38I	GRGCYC	2 cut(s)	740, 1196
FaeI	CATG	6 cut(s)	105, 717, 776, 1102, 1108, 1117
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	6 cut(s)	101, 713, 772, 1098, 1104, 1113
FbaI	TGATCA	1 cut(s)	1198
FblI	GTMKAC	1 cut(s)	1095
Fnu4HI	GCNGC	4 cut(s)	819, 822, 1082, 1118
FokI	GGATG	2 cut(s)	188, 394
FriOI	GRGCYC	2 cut(s)	740, 1196
Fsp4HI	GCNGC	4 cut(s)	819, 822, 1082, 1118
FspBI	CTAG	2 cut(s)	195, 1176
GluI	GCNGC	4 cut(s)	819, 822, 1082, 1118
GsaI	CCCAGC	2 cut(s)	425, 521
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	3 cut(s)	122, 908, 962
HapII	CCGG	1 cut(s)	662
Hin1II	CATG	6 cut(s)	105, 717, 776, 1102, 1108, 1117
HincII	GTYRAC	1 cut(s)	876
HindII	GTYRAC	1 cut(s)	876
HindIII	AAGCTT	2 cut(s)	848, 1148
HinfI	GANTC	9 cut(s)	5, 557, 617, 728, 854, 917, 1004, 1130, 1166
HpaII	CCGG	1 cut(s)	662
HphI	GGTGA	3 cut(s)	406, 552, 1161
Hpy166II	GTNNAC	3 cut(s)	85, 876, 1096
Hpy188III	TCNNGA	8 cut(s)	96, 173, 266, 407, 460, 947, 1064, 1182
Hpy8I	GTNNAC	3 cut(s)	85, 876, 1096
HpyAV	CCTTC	1 cut(s)	591
HpyCH4III	ACNGT	4 cut(s)	77, 277, 352, 1054
HpyCH4V	TGCA	5 cut(s)	216, 824, 935, 1081, 1117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	9 cut(s)	51, 243, 386, 732, 741, 843, 913, 964, 1140
Hsp92II	CATG	6 cut(s)	105, 717, 776, 1102, 1108, 1117
Ksp22I	TGATCA	1 cut(s)	1198
Kzo9I	GATC	8 cut(s)	98, 262, 412, 502, 708, 830, 982, 1198
LmnI	GCTCC	2 cut(s)	365, 934
Lsp1109I	GCAGC	4 cut(s)	805, 808, 1093, 1129
LweI	GCATC	3 cut(s)	372, 916, 944
MaeI	CTAG	2 cut(s)	195, 1176
MaeIII	GTNAC	2 cut(s)	751, 1048
MalI	GATC	8 cut(s)	100, 264, 414, 504, 710, 832, 984, 1200
MboI	GATC	8 cut(s)	98, 262, 412, 502, 708, 830, 982, 1198
MboII	GAAGA	8 cut(s)	310, 409, 422, 486, 644, 689, 980, 1252
MflI	RGATCY	2 cut(s)	708, 830
MhlI	GDGCHC	2 cut(s)	740, 1196
MluCI	AATT	8 cut(s)	114, 270, 400, 533, 635, 1121, 1186, 1204
MlyI	GAGTC	4 cut(s)	737, 848, 926, 1139
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	2 cut(s)	294, 705
MslI	CAYNNNNRTG	1 cut(s)	1103
MspA1I	CMGCKG	2 cut(s)	685, 818
MspI	CCGG	1 cut(s)	662
MspR9I	CCNGG	2 cut(s)	662, 905
MvaI	CCWGG	1 cut(s)	905
MwoI	GCNNNNNNNGC	1 cut(s)	61
NciI	CCSGG	1 cut(s)	662
NdeII	GATC	8 cut(s)	98, 262, 412, 502, 708, 830, 982, 1198
NlaIII	CATG	6 cut(s)	105, 717, 776, 1102, 1108, 1117
NlaIV	GGNNCC	3 cut(s)	361, 438, 1020
NmuCI	GTSAC	2 cut(s)	751, 1048
NspI	RCATGY	2 cut(s)	1102, 1117
PaeI	GCATGC	1 cut(s)	1117
PciI	ACATGT	1 cut(s)	1098
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	5 cut(s)	5, 557, 617, 1004, 1166
PflFI	GACNNNGTC	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	4 cut(s)	820, 823, 1083, 1119
PleI	GAGTC	4 cut(s)	736, 848, 925, 1138
PpsI	GAGTC	4 cut(s)	736, 848, 925, 1138
PpuMI	RGGWCCY	1 cut(s)	451
PscI	ACATGT	1 cut(s)	1098
PshBI	ATTAAT	1 cut(s)	294
Psp124BI	GAGCTC	2 cut(s)	740, 1196
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	903
PspFI	CCCAGC	2 cut(s)	421, 517
PspGI	CCWGG	1 cut(s)	903
PspN4I	GGNNCC	3 cut(s)	361, 438, 1020
PspPI	GGNCC	2 cut(s)	331, 451
PspPPI	RGGWCCY	1 cut(s)	451
PstNI	CAGNNNCTG	2 cut(s)	421, 821
PsuI	RGATCY	2 cut(s)	708, 830
PsyI	GACNNNGTC	1 cut(s)	329
PvuII	CAGCTG	2 cut(s)	685, 818
RsaI	GTAC	2 cut(s)	251, 1103
RsaNI	GTAC	2 cut(s)	250, 1102
RseI	CAYNNNNRTG	1 cut(s)	1103
SacI	GAGCTC	2 cut(s)	740, 1196
SaqAI	TTAA	2 cut(s)	294, 705
SatI	GCNGC	4 cut(s)	819, 822, 1082, 1118
Sau3AI	GATC	8 cut(s)	98, 262, 412, 502, 708, 830, 982, 1198
Sau96I	GGNCC	2 cut(s)	331, 451
SchI	GAGTC	4 cut(s)	737, 848, 926, 1139
ScrFI	CCNGG	2 cut(s)	662, 905
SduI	GDGCHC	2 cut(s)	740, 1196
SfaNI	GCATC	3 cut(s)	372, 916, 944
SinI	GGWCC	2 cut(s)	331, 451
SmiMI	CAYNNNNRTG	1 cut(s)	1103
SmlI	CTYRAG	2 cut(s)	56, 173
SmoI	CTYRAG	2 cut(s)	56, 173
SpeI	ACTAGT	1 cut(s)	1175
SphI	GCATGC	1 cut(s)	1117
Sse9I	AATT	8 cut(s)	114, 270, 400, 533, 635, 1121, 1186, 1204
SspMI	CTAG	2 cut(s)	195, 1176
SstI	GAGCTC	2 cut(s)	740, 1196
StyD4I	CCNGG	2 cut(s)	660, 903
TaaI	ACNGT	4 cut(s)	77, 277, 352, 1054
TaqI	TCGA	1 cut(s)	1190
TasI	AATT	8 cut(s)	114, 270, 400, 533, 635, 1121, 1186, 1204
TatI	WGTACW	1 cut(s)	1101
TfiI	GAWTC	5 cut(s)	5, 557, 617, 1004, 1166
Tru1I	TTAA	2 cut(s)	294, 705
Tru9I	TTAA	2 cut(s)	294, 705
TscAI	CASTG	3 cut(s)	760, 874, 1057
TseFI	GTSAC	2 cut(s)	751, 1048
TseI	GCWGC	4 cut(s)	818, 821, 1081, 1117
Tsp45I	GTSAC	2 cut(s)	751, 1048
TspDTI	ATGAA	8 cut(s)	151, 176, 500, 690, 879, 996, 1121, 1160
TspGWI	ACGGA	2 cut(s)	18, 352
TspRI	CASTG	3 cut(s)	760, 874, 1057
Tth111I	GACNNNGTC	1 cut(s)	329
Van91I	CCANNNNNTGG	1 cut(s)	688
VpaK11BI	GGWCC	2 cut(s)	331, 451
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	2 cut(s)	1186, 1204
XceI	RCATGY	2 cut(s)	1102, 1117
XmiI	GTMKAC	1 cut(s)	1095
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	2 cut(s)	195, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.