Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008258

Physical Location & Seq

Genomic Coordinates Reverse (-)

18732378 .. 18734199

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCCAATCTCAGAGAAATCTTCTGCTACTAATACGAGGTTAGTTGTTAAGAAGCTTTTCGCCAGACAGCTACATGAAGGATTTGGTGCTGTTGTAAGAAGAAGCATCGGAAGGTTTGAGTTCAGATACTTCGACCCATTTCTTGTCCTGGATGAATTCTCAGTTTCAGCTCCTGCAGGATTCCCAGATCATCCACACAGAGGATTTGAGACAGTCACTTACATGTTAGAGGGAGAGATTTTGCATGAAGACTGTGAAGGACACAAAGGAGTAATAAGAGAAGGAGGATTACAATGGATGACTGCAGGAAAAGGCATTGTTCATTCTGAAATGCCTTCTTCTAATTCCAATGGCATTACTCACAACAAGGGCTTGCAGCTTTGGATCAATCTCTCCTCAAGACAAAAACTAGTGGAGCCGAGTTATCAAGAGATAGAGAGTAAAGACATAGCAGAAACAGAGAAAGATGGTGTGAGAGTTAGAGTCATAGCAGGAGAATGGAATGGAGTTAAGTCAAAGATCTGCACAAGAACGCCAACAATGTATTTAGACTTCACTCTCTCGCCGGGTTCTCGAATCTCTCAACCCATTCCACTTCACTGGAACGCGTTTGTCTATGTTCTTCAAGGCCATGGTCACTTTGGGGATTCCAAGTTACAACATTCAGCCGCTGCTGCGCACCACTTGCTGGTTCTAGGCCTAGGTGGTGACATGTTAGAGGCTTGGAACGGTTCTGATTCCGGTTTGCCTCTTCGGTTTATCCTTGTGGCTGGTGAGCCTATAGGTGAACCAATGGTTCAGTTTGGTCCTTTTGTTATGAACACACAAGAAGAGATTGATGAGACCATTGACGACTTTGAGAATTTTAGAAATGGGTTTGAAAAAGCTAGACATTGGAAGTCTCAAGCTGCTTCTGCCTTGGGACTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

310

Amino Acids

34.55

Weight (kDa)

5.96

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	32 - 129	1.8e-29	Pirin
Pirin_C	PF05726	182 - 292	8.4e-31	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50590 AT1G50590 AT1G50590
fragaria_vesca	FvH4_3g23750
malus_domestica	MD03G1190300.v1.1 MD11G1206900.v1.1
prunus_persica	Prupe.4G229700_v2.0.a1
pyrus_communis	pycom03g14310 pycom11g17990
rosa_chinensis	RchiOBHm_Chr5g0041911 RchiOBHm_Chr5g0041961
rosa_laevigata	RLG00000034105
rosa_multiflora	Rmu_co8239403.1_g000001 Rmu_sc0009443.1_g000006 Rmu_sc0010997.1_g000001
rosa_rugosa	Rorug05G0197300
rosa_samantha	Rh5AG281800 Rh5AG282200 Rh5BG287300 Rh5BG287800 Rh5CG319600 Rh5DG296700
rosa_wichuraiana	Rw0G001360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	678
AccB7I	CCANNNNNTGG	1 cut(s)	688
AccII	CGCG	1 cut(s)	608
AciI	CCGC	1 cut(s)	669
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	2 cut(s)	155, 862
AfiI	CCNNNNNNNGG	2 cut(s)	200, 688
AflIII	ACRYGT	3 cut(s)	222, 606, 711
AgsI	TTSAA	2 cut(s)	626, 881
AhlI	ACTAGT	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	55, 70, 170, 379, 887, 908
AluI	AGCT	6 cut(s)	55, 70, 170, 379, 887, 908
Alw26I	GTCTC	3 cut(s)	203, 836, 906
AlwI	GGATC	1 cut(s)	392
AlwNI	CAGNNNCTG	2 cut(s)	173, 671
AoxI	GGCC	2 cut(s)	628, 697
ApeKI	GCWGC	4 cut(s)	376, 671, 674, 908
ApoI	RAATTY	2 cut(s)	155, 862
Asp700I	GAANNNNTTC	1 cut(s)	56
AspA2I	CCTAGG	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	679
AspS9I	GGNCC	1 cut(s)	806
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	3 cut(s)	719, 785, 797
AvaII	GGWCC	1 cut(s)	806
AvrII	CCTAGG	1 cut(s)	700
BarI	GAAGNNNNNNTAC	4 cut(s)	273, 305, 536, 568
BbsI	GAAGAC	1 cut(s)	255
BbvI	GCAGC	4 cut(s)	388, 658, 661, 895
BccI	CCATC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	149
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	3 cut(s)	203, 836, 906
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	4 cut(s)	410, 695, 701, 888
BfmI	CTRYAG	3 cut(s)	174, 303, 780
BglII	AGATCT	1 cut(s)	519
BisI	GCNGC	5 cut(s)	377, 669, 672, 675, 909
BlnI	CCTAGG	1 cut(s)	700
BlsI	GCNGC	5 cut(s)	378, 670, 673, 676, 910
Bme1390I	CCNGG	2 cut(s)	149, 567
Bme18I	GGWCC	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	2 cut(s)	149, 567
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	382, 888
BpuMI	CCSGG	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	3 cut(s)	631, 700, 918
BsaWI	WCCGGW	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 688
Bse1I	ACTGG	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	631, 700, 918
BseGI	GGATG	3 cut(s)	157, 190, 303
BseLI	CCNNNNNNNGG	2 cut(s)	200, 688
BseMII	CTCAG	2 cut(s)	24, 174
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	385
BseXI	GCAGC	4 cut(s)	388, 658, 661, 895
BsgI	GTGCAG	1 cut(s)	508
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	2 cut(s)	630, 699
BsiSI	CCGG	2 cut(s)	566, 741
BslI	CCNNNNNNNGG	2 cut(s)	200, 688
BsmAI	GTCTC	3 cut(s)	203, 836, 906
BsnI	GGCC	2 cut(s)	630, 699
Bso31I	GGTCTC	1 cut(s)	836
Bsp143I	GATC	3 cut(s)	187, 384, 519
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	1 cut(s)	669
BspANI	GGCC	2 cut(s)	630, 699
BspCNI	CTCAG	2 cut(s)	23, 173
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	1 cut(s)	417
BspMAI	CTGCAG	2 cut(s)	178, 307
BspPI	GGATC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	836
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	3 cut(s)	631, 700, 918
BssMI	GATC	3 cut(s)	187, 384, 519
BssT1I	CCWWGG	3 cut(s)	631, 700, 918
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	4 cut(s)	214, 254, 731, 927
Bst6I	CTCTTC	2 cut(s)	756, 825
BstAPI	GCANNNNNTGC	1 cut(s)	685
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	10, 160
BstDSI	CCRYGG	1 cut(s)	631
BstF5I	GGATG	3 cut(s)	157, 190, 303
BstFNI	CGCG	1 cut(s)	608
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	3 cut(s)	190, 387, 522
BstMAI	GTCTC	3 cut(s)	203, 836, 906
BstMBI	GATC	3 cut(s)	187, 384, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	674, 685, 914
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	2 cut(s)	226, 715
BstSCI	CCNGG	2 cut(s)	147, 565
BstSFI	CTRYAG	3 cut(s)	174, 303, 780
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	4 cut(s)	388, 658, 661, 895
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	519
BstXI	CCANNNNNNTGG	1 cut(s)	600
BstYI	RGATCY	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	630, 699
BtgI	CCRYGG	1 cut(s)	631
BtsCI	GGATG	3 cut(s)	157, 190, 303
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	1 cut(s)	374
CaiI	CAGNNNCTG	2 cut(s)	173, 671
CfoI	GCGC	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	806
CviAII	CATG	5 cut(s)	74, 223, 245, 632, 712
DdeI	CTNAG	2 cut(s)	10, 160
DpnI	GATC	3 cut(s)	189, 386, 521
DpnII	GATC	3 cut(s)	187, 384, 519
Eam1104I	CTCTTC	2 cut(s)	756, 825
EarI	CTCTTC	2 cut(s)	756, 825
Eco130I	CCWWGG	3 cut(s)	631, 700, 918
Eco147I	AGGCCT	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	836
Eco47I	GGWCC	1 cut(s)	806
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	3 cut(s)	631, 700, 918
ErhI	CCWWGG	3 cut(s)	631, 700, 918
FaeI	CATG	5 cut(s)	77, 226, 248, 635, 715
FatI	CATG	5 cut(s)	73, 222, 244, 631, 711
Fnu4HI	GCNGC	5 cut(s)	377, 669, 672, 675, 909
FokI	GGATG	3 cut(s)	164, 177, 310
Fsp4HI	GCNGC	5 cut(s)	377, 669, 672, 675, 909
FspBI	CTAG	4 cut(s)	410, 695, 701, 888
FspI	TGCGCA	1 cut(s)	678
GlaI	GCGC	1 cut(s)	678
GluI	GCNGC	5 cut(s)	377, 669, 672, 675, 909
HaeIII	GGCC	2 cut(s)	630, 699
HapII	CCGG	2 cut(s)	566, 741
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	5 cut(s)	77, 226, 248, 635, 715
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	5 cut(s)	180, 483, 576, 647, 737
HpaII	CCGG	2 cut(s)	566, 741
HphI	GGTGA	3 cut(s)	719, 785, 797
Hpy166II	GTNNAC	1 cut(s)	788
Hpy188I	TCNGA	6 cut(s)	13, 110, 125, 328, 736, 932
Hpy188III	TCNNGA	3 cut(s)	399, 428, 573
Hpy8I	GTNNAC	1 cut(s)	788
HpyAV	CCTTC	5 cut(s)	71, 105, 251, 275, 345
HpyCH4III	ACNGT	4 cut(s)	214, 254, 731, 927
HpyCH4V	TGCA	5 cut(s)	176, 244, 305, 376, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	674, 685, 914
HpyF3I	CTNAG	2 cut(s)	10, 160
Hsp92II	CATG	5 cut(s)	77, 226, 248, 635, 715
HspAI	GCGC	1 cut(s)	677
Kzo9I	GATC	3 cut(s)	187, 384, 519
LmnI	GCTCC	2 cut(s)	175, 415
Lsp1109I	GCAGC	4 cut(s)	388, 658, 661, 895
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	4 cut(s)	410, 695, 701, 888
MaeIII	GTNAC	4 cut(s)	214, 635, 654, 707
MalI	GATC	3 cut(s)	189, 386, 521
MboI	GATC	3 cut(s)	187, 384, 519
MboII	GAAGA	7 cut(s)	12, 111, 260, 330, 614, 743, 842
MflI	RGATCY	1 cut(s)	519
MluCI	AATT	3 cut(s)	155, 343, 862
MluI	ACGCGT	1 cut(s)	606
MlyI	GAGTC	1 cut(s)	492
MnlI	CCTC	7 cut(s)	30, 194, 223, 278, 406, 712, 759
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	2 cut(s)	48, 510
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	2 cut(s)	566, 741
MspR9I	CCNGG	2 cut(s)	149, 567
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	3 cut(s)	674, 685, 914
NciI	CCSGG	1 cut(s)	567
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	3 cut(s)	187, 384, 519
NlaIII	CATG	5 cut(s)	77, 226, 248, 635, 715
NlaIV	GGNNCC	1 cut(s)	417
NmeAIII	GCCGAG	1 cut(s)	444
NmuCI	GTSAC	3 cut(s)	214, 635, 707
NsbI	TGCGCA	1 cut(s)	678
NspI	RCATGY	2 cut(s)	226, 715
PceI	AGGCCT	1 cut(s)	699
PciI	ACATGT	2 cut(s)	222, 711
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	4 cut(s)	180, 576, 647, 737
PflMI	CCANNNNNTGG	1 cut(s)	688
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	5 cut(s)	378, 670, 673, 676, 910
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
PscI	ACATGT	2 cut(s)	222, 711
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	806
PstI	CTGCAG	2 cut(s)	178, 307
PstNI	CAGNNNCTG	2 cut(s)	173, 671
PsuI	RGATCY	1 cut(s)	519
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	48, 510
SatI	GCNGC	5 cut(s)	377, 669, 672, 675, 909
Sau3AI	GATC	3 cut(s)	187, 384, 519
Sau96I	GGNCC	1 cut(s)	806
SbfI	CCTGCAGG	1 cut(s)	178
SchI	GAGTC	1 cut(s)	492
ScrFI	CCNGG	2 cut(s)	149, 567
SdaI	CCTGCAGG	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	3 cut(s)	174, 303, 780
SinI	GGWCC	1 cut(s)	806
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	397, 903
SmoI	CTYRAG	2 cut(s)	397, 903
SpeI	ACTAGT	1 cut(s)	409
Sse8387I	CCTGCAGG	1 cut(s)	178
Sse9I	AATT	3 cut(s)	155, 343, 862
SseBI	AGGCCT	1 cut(s)	699
SsiI	CCGC	1 cut(s)	669
SspMI	CTAG	4 cut(s)	410, 695, 701, 888
StuI	AGGCCT	1 cut(s)	699
StyD4I	CCNGG	2 cut(s)	147, 565
StyI	CCWWGG	3 cut(s)	631, 700, 918
TaaI	ACNGT	4 cut(s)	214, 254, 731, 927
TaqI	TCGA	2 cut(s)	132, 574
TasI	AATT	3 cut(s)	155, 343, 862
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	4 cut(s)	180, 576, 647, 737
Tru1I	TTAA	2 cut(s)	48, 510
Tru9I	TTAA	2 cut(s)	48, 510
TscAI	CASTG	1 cut(s)	605
TseFI	GTSAC	3 cut(s)	214, 635, 707
TseI	GCWGC	4 cut(s)	376, 671, 674, 908
Tsp45I	GTSAC	3 cut(s)	214, 635, 707
TspDTI	ATGAA	5 cut(s)	90, 168, 261, 311, 833
TspRI	CASTG	1 cut(s)	605
Van91I	CCANNNNNTGG	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	806
XapI	RAATTY	2 cut(s)	155, 862
XceI	RCATGY	2 cut(s)	226, 715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	638
XmaJI	CCTAGG	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	4 cut(s)	410, 695, 701, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.