Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008258

Physical Location & Seq

Genomic Coordinates Forward (+)

14713714 .. 14716533

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G229700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCCTGAGAGAGAAGTTGTCAAAAAACCTCGTCTTGTGGTGAGGAAGTTCTTGGCTAGGCCTCAACATGAAGGAGTTGGGGCAGTTGTTAGAAGGAGCATTGGGAGGTTTGAGCTGAAATACTTTGATCCTTTTCTTGTTCTGGATGAGTTCTCAGTTTCTGCTCCTGCTGGGTTTCCTGATCATCCACACAGAGGGTTTGAGACAGTGACCTACATGTTGCAGGGAGCTGTCACACATGAAGACTTTGAAGGGCACAAAGGGACAATAGGAGCCGGTGACTTACAATGGATGACCGCAGGAAGAGGTATTGTTCATTCAGAAATGCCTGCGGCCCAGGGAACCCAAAAGGGTTTGCAGTTGTGGATAAACCTCTCCTCCAAACATAAAATGATTGAGCCAAAGTACCAAGAAATGCTGAGCAAGGACATTAAAGAGGCTGCAAAAGATGGGGTGAAAGTTAGGGTAATAGCTGGAGAGGCCTTGGGAACAAAGTCACCAATTTACACAAGGACCCCAACCATGTACTTGGACTTCACTCTGAAATCAGGGGCTATTTTGCAACAGCCAATACAAATATCATGGAATGCATTTGTGTATGTGTTGGAGGGTGAGGGTATTTTTGGAAGTCCAAAATCTTTGCCAGTGACAGCCCACCATCTTCTTCTTCTTGGATCTGGGGATGGCTTGGAGGCATGGAACAAATCTTCCAAGCCCCTTAGATTTATCTTAATTGGAGGTGAACCTCTGGGTGAGCCAATAACACAATATGGGCCATTTGTGATGAACACACAAGAAGAGATTGACCAAACCATTGATGATTTTGACAATTGTGTCAATGGATTTGAGAAGGCAAGACATTGGAGTTCTGGAGATGCACTTAGCCTTGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

299

Amino Acids

33.08

Weight (kDa)

6.21

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50590 AT1G50590 AT1G50590
fragaria_vesca	FvH4_3g23750
malus_domestica	MD03G1190300.v1.1 MD11G1206900.v1.1
prunus_persica	Prupe.4G229700_v2.0.a1
pyrus_communis	pycom03g14310 pycom11g17990
rosa_chinensis	RchiOBHm_Chr5g0041911 RchiOBHm_Chr5g0041961
rosa_laevigata	RLG00000034105
rosa_multiflora	Rmu_co8239403.1_g000001 Rmu_sc0009443.1_g000006 Rmu_sc0010997.1_g000001
rosa_rugosa	Rorug05G0197300
rosa_samantha	Rh5AG281800 Rh5AG282200 Rh5BG287300 Rh5BG287800 Rh5CG319600 Rh5DG296700
rosa_wichuraiana	Rw0G001360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	833
AciI	CCGC	2 cut(s)	297, 332
AclWI	GGATC	2 cut(s)	122, 682
AfaI	GTAC	2 cut(s)	407, 527
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	336
AloI	GAACNNNNNNTCC	2 cut(s)	692, 724
AluBI	AGCT	3 cut(s)	115, 230, 473
AluI	AGCT	3 cut(s)	115, 230, 473
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	2 cut(s)	122, 682
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	4 cut(s)	59, 333, 480, 773
ApeKI	GCWGC	1 cut(s)	440
AspS9I	GGNCC	3 cut(s)	334, 513, 773
AsuHPI	GGTGA	7 cut(s)	52, 290, 466, 489, 623, 752, 764
AvaII	GGWCC	1 cut(s)	513
BaeGI	GKGCMC	1 cut(s)	258
BarI	GAAGNNNNNNTAC	2 cut(s)	518, 550
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	3 cut(s)	443, 666, 677
BciT130I	CCWGG	1 cut(s)	338
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	333, 441
BlpI	GCTNAGC	1 cut(s)	419
BlsI	GCNGC	2 cut(s)	334, 442
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	513
BmgT120I	GGNCC	3 cut(s)	334, 513, 773
BmiI	GGNNCC	3 cut(s)	274, 343, 515
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	865
BpiI	GAAGAC	1 cut(s)	249
BpmI	CTGGAG	2 cut(s)	495, 891
Bpu1102I	GCTNAGC	1 cut(s)	419
BsaJI	CCNNGG	3 cut(s)	336, 337, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	3 cut(s)	336, 337, 483
BseGI	GGATG	4 cut(s)	151, 184, 297, 688
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	168, 410
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	4 cut(s)	61, 335, 482, 775
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	4 cut(s)	61, 335, 482, 775
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	127, 181, 674
Bsp1720I	GCTNAGC	1 cut(s)	419
BspACI	CCGC	2 cut(s)	297, 332
BspANI	GGCC	4 cut(s)	61, 335, 482, 775
BspCNI	CTCAG	2 cut(s)	167, 411
BspLI	GGNNCC	3 cut(s)	274, 343, 515
BspPI	GGATC	2 cut(s)	122, 682
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	644
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	336, 337, 483
BssMI	GATC	3 cut(s)	127, 181, 674
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	298, 792
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	5 cut(s)	6, 154, 419, 719, 881
BstF5I	GGATG	4 cut(s)	151, 184, 297, 688
BstKTI	GATC	3 cut(s)	130, 184, 677
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	3 cut(s)	127, 181, 674
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	674
BstXI	CCANNNNNNTGG	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	674
BsuRI	GGCC	4 cut(s)	61, 335, 482, 775
BtsCI	GGATG	4 cut(s)	151, 184, 297, 688
BtsIMutI	CAGTG	2 cut(s)	213, 651
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	334, 513, 773
Csp6I	GTAC	2 cut(s)	406, 526
CviAII	CATG	6 cut(s)	68, 217, 239, 523, 582, 696
CviQI	GTAC	2 cut(s)	406, 526
DdeI	CTNAG	5 cut(s)	6, 154, 419, 719, 881
DpnI	GATC	3 cut(s)	129, 183, 676
DpnII	GATC	3 cut(s)	127, 181, 674
DrdI	GACNNNNNNGTC	1 cut(s)	833
DseDI	GACNNNNNNGTC	1 cut(s)	833
Eam1104I	CTCTTC	2 cut(s)	298, 792
EarI	CTCTTC	2 cut(s)	298, 792
Eco130I	CCWWGG	1 cut(s)	483
Eco147I	AGGCCT	2 cut(s)	61, 482
Eco47I	GGWCC	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	6 cut(s)	71, 220, 242, 526, 585, 699
FaiI	YATR	9 cut(s)	69, 218, 240, 387, 524, 583, 600, 697, 771
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	6 cut(s)	67, 216, 238, 522, 581, 695
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	333, 441
FokI	GGATG	4 cut(s)	158, 171, 304, 695
Fsp4HI	GCNGC	2 cut(s)	333, 441
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	2 cut(s)	333, 441
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	2 cut(s)	495, 891
HaeIII	GGCC	4 cut(s)	61, 335, 482, 775
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	6 cut(s)	71, 220, 242, 526, 585, 699
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	7 cut(s)	52, 290, 466, 489, 623, 752, 764
Hpy166II	GTNNAC	1 cut(s)	743
Hpy188I	TCNGA	2 cut(s)	322, 543
Hpy188III	TCNNGA	3 cut(s)	143, 179, 870
Hpy8I	GTNNAC	1 cut(s)	743
HpyAV	CCTTC	4 cut(s)	65, 87, 245, 844
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	6 cut(s)	223, 358, 443, 562, 590, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	5 cut(s)	6, 154, 419, 719, 881
Hsp92II	CATG	6 cut(s)	71, 220, 242, 526, 585, 699
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	127, 181, 674
LmnI	GCTCC	4 cut(s)	96, 169, 227, 272
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	865
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	5 cut(s)	208, 232, 278, 495, 646
MalI	GATC	3 cut(s)	129, 183, 676
MboI	GATC	3 cut(s)	127, 181, 674
MboII	GAAGA	7 cut(s)	254, 315, 653, 656, 659, 699, 809
MfeI	CAATTG	1 cut(s)	829
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	3 cut(s)	501, 732, 829
MmeI	TCCRAC	1 cut(s)	585
Mph1103I	ATGCAT	1 cut(s)	592
MseI	TTAA	2 cut(s)	432, 731
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	338
MunI	CAATTG	1 cut(s)	829
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	3 cut(s)	127, 181, 674
NlaIII	CATG	6 cut(s)	71, 220, 242, 526, 585, 699
NlaIV	GGNNCC	3 cut(s)	274, 343, 515
NmuCI	GTSAC	5 cut(s)	208, 232, 278, 495, 646
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	1 cut(s)	220
PasI	CCCWGGG	1 cut(s)	337
PceI	AGGCCT	2 cut(s)	61, 482
PciI	ACATGT	1 cut(s)	216
PctI	GAATGC	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	334, 442
PpuMI	RGGWCCY	1 cut(s)	513
PscI	ACATGT	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	274, 343, 515
PspPI	GGNCC	3 cut(s)	334, 513, 773
PspPPI	RGGWCCY	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	2 cut(s)	407, 527
RsaNI	GTAC	2 cut(s)	406, 526
SaqAI	TTAA	2 cut(s)	432, 731
SatI	GCNGC	2 cut(s)	333, 441
Sau3AI	GATC	3 cut(s)	127, 181, 674
Sau96I	GGNCC	3 cut(s)	334, 513, 773
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	865
SinI	GGWCC	1 cut(s)	513
Sse9I	AATT	3 cut(s)	501, 732, 829
SseBI	AGGCCT	2 cut(s)	61, 482
SsiI	CCGC	2 cut(s)	297, 332
SspMI	CTAG	1 cut(s)	57
StuI	AGGCCT	2 cut(s)	61, 482
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	208
TasI	AATT	3 cut(s)	501, 732, 829
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	432, 731
Tru9I	TTAA	2 cut(s)	432, 731
TscAI	CASTG	2 cut(s)	213, 651
TseFI	GTSAC	5 cut(s)	208, 232, 278, 495, 646
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	5 cut(s)	208, 232, 278, 495, 646
TspDTI	ATGAA	4 cut(s)	84, 255, 305, 800
TspRI	CASTG	2 cut(s)	213, 651
VpaK11BI	GGWCC	1 cut(s)	513
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.