Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008258

Physical Location & Seq

Genomic Coordinates Forward (+)

36871127 .. 36873358

Gene Structure 2232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTCTGAGACAGAAGTTTCACTTGGTTTTAAAGAAGGTCGAGTTGTGGTGAGGAAGTTCTTGGCTAGGCCTCAGCATGAAGGAGTTGGTGCCATTGTTAGAAGAAGCATTGGGAGGTTTGAGCTGAGATACTTTGATCCTTTTCTTGTTCTGGATGAGTTCTCAGTTACTGCTCCTGCTGGATTCCCTGATCATCCACATAGAGGTTTTGGGTTTGAGACGGTGACCTACATGTTGCAGGGAGCCATCACACATGAAGATTTCGAAGGGCACAAAGGGACAATAGGAGCCGGCGATGTGCAGTGGATGACTGCAGGTAGAGGTATTGTTCACTCGGAAATGCCTGCAGCCCAAGGAACCCAAAAGGGTCTACAGTTGTGGATAAACCTCTCCTCCAAACATAAAATGATTGAGCCAAAGTACCAAGAAATGGTCAGCAAGGACATTGCAGAGGCTACAAAAGATGGGATCGAGGTTAGAGTTATAGCAGGAGAAGCCTTGGGAACAAAGTCACCAATCTACACAAGAACCCCAACCATGTACTTGGACTTCACTCTCAAACCAGGAGCTCACCTTCAGCAACCAATACCAACATCATGGAATGCATTTGTATACGTCTTGGAGGGGGAGGGCATTTTTGGAACTCCAAAGTCATTGCCAGTGGCAGGTCACCACCTTCTTCTTTTAGGATCTGGGGATGGATTGGGGGCATGGAACATGTCTTCCAAGAACCTTAGGTTTATATTAGTTGGAGGTCAACCTTTGGGGGAGCCTGTAAAGCAACTAGGGCCCTTTGTGATGAACACTGAGGAAGAGATTGATCAAACCATTGATGACTTTGAAAACTGTGTCAATGGATTTGAGAAGGCAACACATTGGAGATCTGGATCTGCACTTAGCCTTGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

303

Amino Acids

33.36

Weight (kDa)

5.78

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	33 - 128	6.9e-30	Pirin
Pirin_C	PF05726	181 - 285	5.5e-31	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50590 AT1G50590 AT1G50590
fragaria_vesca	FvH4_3g23750
malus_domestica	MD03G1190300.v1.1 MD11G1206900.v1.1
prunus_persica	Prupe.4G229700_v2.0.a1
pyrus_communis	pycom03g14310 pycom11g17990
rosa_chinensis	RchiOBHm_Chr5g0041911 RchiOBHm_Chr5g0041961
rosa_laevigata	RLG00000034105
rosa_multiflora	Rmu_co8239403.1_g000001 Rmu_sc0009443.1_g000006 Rmu_sc0010997.1_g000001
rosa_rugosa	Rorug05G0197300
rosa_samantha	Rh5AG281800 Rh5AG282200 Rh5BG287300 Rh5BG287800 Rh5CG319600 Rh5DG296700
rosa_wichuraiana	Rw0G001360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	305, 656
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccI	GTMKAC	2 cut(s)	370, 612
AclWI	GGATC	4 cut(s)	131, 476, 697, 895
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	2 cut(s)	422, 542
AfiI	CCNNNNNNNGG	3 cut(s)	203, 430, 665
AflIII	ACRYGT	2 cut(s)	231, 717
AgsI	TTSAA	1 cut(s)	842
AjnI	CCWGG	1 cut(s)	562
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AloI	GAACNNNNNNTCC	2 cut(s)	707, 739
AluBI	AGCT	2 cut(s)	124, 569
AluI	AGCT	2 cut(s)	124, 569
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	2 cut(s)	2, 212
AlwI	GGATC	4 cut(s)	131, 476, 697, 895
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	68, 788
ApaI	GGGCCC	1 cut(s)	792
ApeKI	GCWGC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	788, 789
AsuHPI	GGTGA	5 cut(s)	61, 235, 504, 563, 662
AsuII	TTCGAA	1 cut(s)	264
AxyI	CCTNAGG	1 cut(s)	734
BaeGI	GKGCMC	2 cut(s)	273, 792
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	571, 792
BarI	GAAGNNNNNNTAC	2 cut(s)	533, 565
BbsI	GAAGAC	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	571
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	3 cut(s)	254, 458, 692
BciT130I	CCWGG	1 cut(s)	564
BclI	TGATCA	2 cut(s)	190, 820
BcoDI	GTCTC	2 cut(s)	2, 212
BfaI	CTAG	2 cut(s)	66, 785
BfmI	CTRYAG	3 cut(s)	312, 345, 371
BfuAI	ACCTGC	2 cut(s)	305, 656
BglII	AGATCT	1 cut(s)	881
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	564
BmgT120I	GGNCC	2 cut(s)	788, 789
BmiI	GGNNCC	6 cut(s)	91, 244, 289, 358, 771, 790
BmrFI	CCNGG	1 cut(s)	564
BpiI	GAAGAC	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	886
BsaJI	CCNNGG	2 cut(s)	352, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 430, 665
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	659
Bse21I	CCTNAGG	1 cut(s)	734
Bse3DI	GCAATG	2 cut(s)	444, 653
Bse8I	GATNNNNATC	1 cut(s)	886
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	352, 498
BseGI	GGATG	4 cut(s)	160, 193, 312, 703
BseJI	GATNNNNATC	1 cut(s)	886
BseLI	CCNNNNNNNGG	3 cut(s)	203, 430, 665
BseMI	GCAATG	2 cut(s)	444, 653
BseMII	CTCAG	4 cut(s)	86, 116, 177, 798
BseNI	ACTGG	1 cut(s)	659
BseRI	GAGGAG	1 cut(s)	382
BseSI	GKGCMC	2 cut(s)	273, 792
BseXI	GCAGC	1 cut(s)	359
BsgI	GTGCAG	2 cut(s)	320, 876
BshFI	GGCC	2 cut(s)	70, 790
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	571
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	3 cut(s)	203, 430, 665
BsmAI	GTCTC	2 cut(s)	2, 212
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	2 cut(s)	70, 790
Bsp119I	TTCGAA	1 cut(s)	264
Bsp120I	GGGCCC	1 cut(s)	788
Bsp1286I	GDGCHC	3 cut(s)	273, 571, 792
Bsp143I	GATC	7 cut(s)	136, 190, 468, 689, 820, 881, 887
BspANI	GGCC	2 cut(s)	70, 790
BspCNI	CTCAG	4 cut(s)	85, 117, 176, 799
BspLI	GGNNCC	6 cut(s)	91, 244, 289, 358, 771, 790
BspMAI	CTGCAG	2 cut(s)	316, 349
BspMI	ACCTGC	2 cut(s)	305, 656
BspPI	GGATC	4 cut(s)	131, 476, 697, 895
BspT104I	TTCGAA	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	444, 653
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	659
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	352, 498
BssMI	GATC	7 cut(s)	136, 190, 468, 689, 820, 881, 887
BssNAI	GTATAC	1 cut(s)	613
BssT1I	CCWWGG	2 cut(s)	352, 498
Bst1107I	GTATAC	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	3 cut(s)	223, 375, 848
Bst6I	CTCTTC	1 cut(s)	807
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	292, 345
BstDEI	CTNAG	7 cut(s)	6, 72, 125, 163, 734, 807, 896
BstEII	GGTNACC	2 cut(s)	223, 668
BstF5I	GGATG	4 cut(s)	160, 193, 312, 703
BstKTI	GATC	7 cut(s)	139, 193, 471, 692, 823, 884, 890
BstMAI	GTCTC	2 cut(s)	2, 212
BstMBI	GATC	7 cut(s)	136, 190, 468, 689, 820, 881, 887
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 778, 787
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	2 cut(s)	235, 721
BstPI	GGTNACC	2 cut(s)	223, 668
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	3 cut(s)	312, 345, 371
BstSLI	GKGCMC	2 cut(s)	273, 792
BstV1I	GCAGC	1 cut(s)	359
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	3 cut(s)	689, 881, 887
BstXI	CCANNNNNNTGG	2 cut(s)	544, 597
BstYI	RGATCY	3 cut(s)	689, 881, 887
BstZ17I	GTATAC	1 cut(s)	613
Bsu36I	CCTNAGG	1 cut(s)	734
BsuRI	GGCC	2 cut(s)	70, 790
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	160, 193, 312, 703
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	3 cut(s)	308, 666, 804
BveI	ACCTGC	2 cut(s)	305, 656
Cac8I	GCNNGC	2 cut(s)	292, 345
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	788, 789
Csp6I	GTAC	2 cut(s)	421, 541
CviAII	CATG	7 cut(s)	77, 232, 254, 538, 597, 711, 718
CviQI	GTAC	2 cut(s)	421, 541
DdeI	CTNAG	7 cut(s)	6, 72, 125, 163, 734, 807, 896
DpnI	GATC	7 cut(s)	138, 192, 470, 691, 822, 883, 889
DpnII	GATC	7 cut(s)	136, 190, 468, 689, 820, 881, 887
DraI	TTTAAA	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Ecl136II	GAGCTC	1 cut(s)	569
Eco130I	CCWWGG	2 cut(s)	352, 498
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	2 cut(s)	571, 792
Eco53kI	GAGCTC	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	560
Eco81I	CCTNAGG	1 cut(s)	734
Eco91I	GGTNACC	2 cut(s)	223, 668
EcoICRI	GAGCTC	1 cut(s)	569
EcoO109I	RGGNCCY	2 cut(s)	788, 789
EcoO65I	GGTNACC	2 cut(s)	223, 668
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	352, 498
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	2 cut(s)	571, 792
ErhI	CCWWGG	2 cut(s)	352, 498
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	7 cut(s)	80, 235, 257, 541, 600, 714, 721
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	7 cut(s)	76, 231, 253, 537, 596, 710, 717
FbaI	TGATCA	2 cut(s)	190, 820
FblI	GTMKAC	2 cut(s)	370, 612
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	4 cut(s)	167, 180, 319, 710
FriOI	GRGCYC	2 cut(s)	571, 792
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	2 cut(s)	66, 785
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	70, 790
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	7 cut(s)	80, 235, 257, 541, 600, 714, 721
HincII	GTYRAC	1 cut(s)	758
HindII	GTYRAC	1 cut(s)	758
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	5 cut(s)	61, 235, 504, 563, 662
Hpy166II	GTNNAC	4 cut(s)	331, 371, 613, 758
Hpy188I	TCNGA	2 cut(s)	7, 337
Hpy188III	TCNNGA	2 cut(s)	152, 885
Hpy8I	GTNNAC	4 cut(s)	331, 371, 613, 758
HpyAV	CCTTC	6 cut(s)	29, 74, 260, 584, 686, 859
HpyCH4III	ACNGT	3 cut(s)	223, 375, 848
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	7 cut(s)	238, 301, 314, 347, 449, 605, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 778, 787
HpyF3I	CTNAG	7 cut(s)	6, 72, 125, 163, 734, 807, 896
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	7 cut(s)	80, 235, 257, 541, 600, 714, 721
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
Ksp22I	TGATCA	2 cut(s)	190, 820
Kzo9I	GATC	7 cut(s)	136, 190, 468, 689, 820, 881, 887
LmnI	GCTCC	5 cut(s)	178, 242, 287, 566, 769
Lsp1109I	GCAGC	1 cut(s)	359
MaeI	CTAG	2 cut(s)	66, 785
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	4 cut(s)	166, 223, 510, 668
MalI	GATC	7 cut(s)	138, 192, 470, 691, 822, 883, 889
MboI	GATC	7 cut(s)	136, 190, 468, 689, 820, 881, 887
MboII	GAAGA	5 cut(s)	114, 269, 671, 714, 824
MflI	RGATCY	3 cut(s)	689, 881, 887
MhlI	GDGCHC	3 cut(s)	273, 571, 792
MmeI	TCCRAC	1 cut(s)	730
Mph1103I	ATGCAT	1 cut(s)	607
MroNI	GCCGGC	1 cut(s)	290
MseI	TTAA	1 cut(s)	30
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	494, 778, 787
NaeI	GCCGGC	1 cut(s)	292
NdeII	GATC	7 cut(s)	136, 190, 468, 689, 820, 881, 887
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	7 cut(s)	80, 235, 257, 541, 600, 714, 721
NlaIV	GGNNCC	6 cut(s)	91, 244, 289, 358, 771, 790
NmuCI	GTSAC	3 cut(s)	223, 510, 668
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	2 cut(s)	235, 721
NspV	TTCGAA	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	70
PciI	ACATGT	2 cut(s)	231, 717
PctI	GAATGC	1 cut(s)	607
PdiI	GCCGGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	1 cut(s)	349
PscI	ACATGT	2 cut(s)	231, 717
Psp124BI	GAGCTC	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	562
PspEI	GGTNACC	2 cut(s)	223, 668
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	6 cut(s)	91, 244, 289, 358, 771, 790
PspOMI	GGGCCC	1 cut(s)	788
PspPI	GGNCC	2 cut(s)	788, 789
PstI	CTGCAG	2 cut(s)	316, 349
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	3 cut(s)	689, 881, 887
RsaI	GTAC	2 cut(s)	422, 542
RsaNI	GTAC	2 cut(s)	421, 541
SacI	GAGCTC	1 cut(s)	571
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	7 cut(s)	136, 190, 468, 689, 820, 881, 887
Sau96I	GGNCC	2 cut(s)	788, 789
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	3 cut(s)	273, 571, 792
SfcI	CTRYAG	3 cut(s)	312, 345, 371
SfuI	TTCGAA	1 cut(s)	264
SseBI	AGGCCT	1 cut(s)	70
SspMI	CTAG	2 cut(s)	66, 785
SstI	GAGCTC	1 cut(s)	571
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	2 cut(s)	352, 498
TaaI	ACNGT	3 cut(s)	223, 375, 848
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	3 cut(s)	40, 264, 471
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	3 cut(s)	308, 666, 811
TseFI	GTSAC	3 cut(s)	223, 510, 668
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	3 cut(s)	223, 510, 668
TspDTI	ATGAA	3 cut(s)	93, 270, 815
TspRI	CASTG	3 cut(s)	308, 666, 811
Van91I	CCANNNNNTGG	1 cut(s)	430
XceI	RCATGY	2 cut(s)	235, 721
XmiI	GTMKAC	2 cut(s)	370, 612
XspI	CTAG	2 cut(s)	66, 785
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.