Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008258

Physical Location & Seq

Genomic Coordinates Reverse (-)

15640627 .. 15642679

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14310.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCCTGAGAATGATATTTCAAGTGTCCTGAAAAAACCTCGTCTTGTGGTGAGGAACTTCTTGGCCAGGCCTCAGCATGAAGGAGTTGGAGCCATTGTTAGAAGGAGCATAGGGAGGTTCGAGCTGAAATACTTTGATCCTTTCCTTGTTTTGGATGAGTTCTCAGTTACTGCTCCTGCTGGTTTTCCGGATCATCCACACAGAGGATTTGAGACAGTGACCTACATGTTGCAGGGAGCTGTGACACATGAAGATTTTGAAGGGCACAAAGGGACAATAGGAGCTGGTGACTTGCAATGGATGACCGCAGGAAGAGGTATCCTTCACTCAGAAATGCCTGCCGCCCAGGGAACCCAAAAGGGTTTACAATTATGGATAAACCTCTCCTCCTCGCAAAAAATGATTGAGCCAAAGTACCAAGAAATACTGAGCAAAGACATTGCAGAGGCTTCAAAAGATGGGATCACAGTTAGGGTAATAGCTGGAGAAGCCTTGGGAACAAAGTCACCAATTTACACAAGGACCCCAACCATGTACTTGGACTTCACCCTGAAACCAGGAGCTCACTTGCAACAACCAATACCAACATCCTGGAATGCATTTGTCTACGTGTTGGAGGGGGAGGGTACTTTTGGAAGTCCACAATCTTTGCCTGTGACAGCCCACCACCTTCTTCTTCTTGGAATTTCTGGGGATGGACTGGAGACATGGAACAAGTCATCCAAAACCCTAAGATTTATCTTAGTTGGTGGTGAGCCTCTGGGGGAGCCTATTACGCAATTTGGACCCTTTGTGATGAACAGTCAAGAAGAGATTGATCAGACCATTGAGGATTTTGAAAATTGTGTCAATGGATTTGAGAAGGCTAGACATTGGAGTTCTGGAGATCCACTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

300

Amino Acids

33.02

Weight (kDa)

5.58

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50590 AT1G50590 AT1G50590
fragaria_vesca	FvH4_3g23750
malus_domestica	MD03G1190300.v1.1 MD11G1206900.v1.1
prunus_persica	Prupe.4G229700_v2.0.a1
pyrus_communis	pycom03g14310 pycom11g17990
rosa_chinensis	RchiOBHm_Chr5g0041911 RchiOBHm_Chr5g0041961
rosa_laevigata	RLG00000034105
rosa_multiflora	Rmu_co8239403.1_g000001 Rmu_sc0009443.1_g000006 Rmu_sc0010997.1_g000001
rosa_rugosa	Rorug05G0197300
rosa_samantha	Rh5AG281800 Rh5AG282200 Rh5BG287300 Rh5BG287800 Rh5CG319600 Rh5DG296700
rosa_wichuraiana	Rw0G001360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	606
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	2 cut(s)	306, 342
AclWI	GGATC	4 cut(s)	131, 198, 470, 881
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	684
AfaI	GTAC	3 cut(s)	416, 536, 628
AfiI	CCNNNNNNNGG	2 cut(s)	151, 203
AflIII	ACRYGT	2 cut(s)	225, 609
AgsI	TTSAA	4 cut(s)	21, 260, 453, 839
AjnI	CCWGG	4 cut(s)	65, 345, 556, 590
AloI	GAACNNNNNNTCC	2 cut(s)	704, 736
AluBI	AGCT	5 cut(s)	124, 239, 284, 482, 563
AluI	AGCT	5 cut(s)	124, 239, 284, 482, 563
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	206, 698
AlwI	GGATC	4 cut(s)	131, 198, 470, 881
AlwNI	CAGNNNCTG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	63, 68
ApoI	RAATTY	1 cut(s)	684
AspS9I	GGNCC	2 cut(s)	522, 785
AsuHPI	GGTGA	5 cut(s)	61, 299, 498, 538, 764
AvaII	GGWCC	2 cut(s)	522, 785
BaeGI	GKGCMC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	565
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
Bbv12I	GWGCWC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	452, 689
BciT130I	CCWGG	4 cut(s)	67, 347, 558, 592
BciVI	GTATCC	1 cut(s)	329
BclI	TGATCA	1 cut(s)	817
BcoDI	GTCTC	2 cut(s)	206, 698
BfaI	CTAG	1 cut(s)	867
BfuI	GTATCC	1 cut(s)	329
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	4 cut(s)	67, 347, 558, 592
Bme18I	GGWCC	2 cut(s)	522, 785
BmgT120I	GGNCC	2 cut(s)	522, 785
BmiI	GGNNCC	5 cut(s)	91, 352, 524, 768, 787
BmrFI	CCNGG	4 cut(s)	67, 347, 558, 592
BpmI	CTGGAG	2 cut(s)	504, 722
Bpu10I	CCTNAGC	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	610
BsaJI	CCNNGG	3 cut(s)	345, 346, 492
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 371, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 203
Bse1I	ACTGG	1 cut(s)	705
Bse3DI	GCAATG	2 cut(s)	302, 438
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	4 cut(s)	67, 347, 558, 592
BseDI	CCNNGG	3 cut(s)	345, 346, 492
BseGI	GGATG	6 cut(s)	160, 193, 306, 587, 700, 719
BseLI	CCNNNNNNNGG	2 cut(s)	151, 203
BseMI	GCAATG	2 cut(s)	302, 438
BseMII	CTCAG	4 cut(s)	86, 177, 342, 419
BseNI	ACTGG	1 cut(s)	705
BseRI	GAGGAG	2 cut(s)	376, 379
BseSI	GKGCMC	1 cut(s)	267
BshFI	GGCC	2 cut(s)	65, 70
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	151, 203
BsmAI	GTCTC	2 cut(s)	206, 698
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	65, 70
Bsp1286I	GDGCHC	2 cut(s)	267, 565
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	136, 190, 462, 817, 886
BspACI	CCGC	2 cut(s)	306, 342
BspANI	GGCC	2 cut(s)	65, 70
BspCNI	CTCAG	4 cut(s)	85, 176, 341, 420
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	5 cut(s)	91, 352, 524, 768, 787
BspPI	GGATC	4 cut(s)	131, 198, 470, 881
BsrDI	GCAATG	2 cut(s)	302, 438
BsrI	ACTGG	1 cut(s)	705
BssECI	CCNNGG	3 cut(s)	345, 346, 492
BssMI	GATC	5 cut(s)	136, 190, 462, 817, 886
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	4 cut(s)	67, 347, 558, 592
Bst4CI	ACNGT	3 cut(s)	217, 469, 803
Bst6I	CTCTTC	2 cut(s)	307, 804
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	7 cut(s)	6, 72, 163, 328, 428, 731, 742
BstF5I	GGATG	6 cut(s)	160, 193, 306, 587, 700, 719
BstKTI	GATC	5 cut(s)	139, 193, 465, 820, 889
BstMAI	GTCTC	2 cut(s)	206, 698
BstMBI	GATC	5 cut(s)	136, 190, 462, 817, 886
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 775
BstNI	CCWGG	4 cut(s)	67, 347, 558, 592
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	4 cut(s)	65, 345, 556, 590
BstSLI	GKGCMC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	886
BstXI	CCANNNNNNTGG	2 cut(s)	538, 591
BstYI	RGATCY	1 cut(s)	886
BsuI	GTATCC	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	65, 70
BtsCI	GGATG	6 cut(s)	160, 193, 306, 587, 700, 719
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	339
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	522, 785
Csp6I	GTAC	3 cut(s)	415, 535, 627
CspCI	CAANNNNNGTGG	2 cut(s)	630, 665
CviAII	CATG	5 cut(s)	77, 226, 248, 532, 708
CviQI	GTAC	3 cut(s)	415, 535, 627
DdeI	CTNAG	7 cut(s)	6, 72, 163, 328, 428, 731, 742
DpnI	GATC	5 cut(s)	138, 192, 464, 819, 888
DpnII	GATC	5 cut(s)	136, 190, 462, 817, 886
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	307, 804
EarI	CTCTTC	2 cut(s)	307, 804
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	492
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	2 cut(s)	522, 785
Eco53kI	GAGCTC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	522
EcoRII	CCWGG	4 cut(s)	65, 345, 556, 590
EcoT14I	CCWWGG	1 cut(s)	492
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	5 cut(s)	80, 229, 251, 535, 711
FaiI	YATR	7 cut(s)	78, 110, 227, 249, 373, 533, 709
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	5 cut(s)	76, 225, 247, 531, 707
FbaI	TGATCA	1 cut(s)	817
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	6 cut(s)	167, 180, 313, 574, 706, 707
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	867
GluI	GCNGC	1 cut(s)	342
GsuI	CTGGAG	2 cut(s)	504, 722
HaeIII	GGCC	2 cut(s)	65, 70
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	5 cut(s)	80, 229, 251, 535, 711
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	5 cut(s)	61, 299, 498, 538, 764
Hpy166II	GTNNAC	3 cut(s)	365, 607, 641
Hpy188I	TCNGA	2 cut(s)	331, 822
Hpy188III	TCNNGA	4 cut(s)	28, 188, 806, 882
Hpy8I	GTNNAC	3 cut(s)	365, 607, 641
HpyAV	CCTTC	6 cut(s)	74, 96, 254, 332, 680, 856
HpyCH4III	ACNGT	3 cut(s)	217, 469, 803
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	5 cut(s)	232, 295, 443, 571, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 775
HpyF3I	CTNAG	7 cut(s)	6, 72, 163, 328, 428, 731, 742
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	5 cut(s)	80, 229, 251, 535, 711
Kpn2I	TCCGGA	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	817
Kzo9I	GATC	5 cut(s)	136, 190, 462, 817, 886
LmnI	GCTCC	7 cut(s)	89, 105, 178, 236, 281, 560, 766
MaeI	CTAG	1 cut(s)	867
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	6 cut(s)	166, 217, 241, 287, 504, 655
MalI	GATC	5 cut(s)	138, 192, 464, 819, 888
MboI	GATC	5 cut(s)	136, 190, 462, 817, 886
MboII	GAAGA	5 cut(s)	263, 324, 665, 668, 821
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	2 cut(s)	267, 565
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	6 cut(s)	368, 510, 684, 779, 841, 895
MluNI	TGGCCA	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	67, 594
Mox20I	TGGCCA	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	601
MroI	TCCGGA	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	2 cut(s)	894, 898
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	4 cut(s)	67, 347, 558, 592
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	4 cut(s)	67, 347, 558, 592
MwoI	GCNNNNNNNGC	2 cut(s)	488, 775
NdeII	GATC	5 cut(s)	136, 190, 462, 817, 886
NlaIII	CATG	5 cut(s)	80, 229, 251, 535, 711
NlaIV	GGNNCC	5 cut(s)	91, 352, 524, 768, 787
NmuCI	GTSAC	5 cut(s)	217, 241, 287, 504, 655
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	229
PacI	TTAATTAA	1 cut(s)	898
PasI	CCCWGGG	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	70
PciI	ACATGT	1 cut(s)	225
PctI	GAATGC	1 cut(s)	601
PfoI	TCCNGGA	1 cut(s)	590
PkrI	GCNGC	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	610
PpuMI	RGGWCCY	1 cut(s)	522
PscI	ACATGT	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	565
Psp5II	RGGWCCY	1 cut(s)	522
Psp6I	CCWGG	4 cut(s)	65, 345, 556, 590
PspGI	CCWGG	4 cut(s)	65, 345, 556, 590
PspN4I	GGNNCC	5 cut(s)	91, 352, 524, 768, 787
PspPI	GGNCC	2 cut(s)	522, 785
PspPPI	RGGWCCY	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	886
RsaI	GTAC	3 cut(s)	416, 536, 628
RsaNI	GTAC	3 cut(s)	415, 535, 627
SacI	GAGCTC	1 cut(s)	565
SaqAI	TTAA	2 cut(s)	894, 898
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	5 cut(s)	136, 190, 462, 817, 886
Sau96I	GGNCC	2 cut(s)	522, 785
ScrFI	CCNGG	4 cut(s)	67, 347, 558, 592
SduI	GDGCHC	2 cut(s)	267, 565
SinI	GGWCC	2 cut(s)	522, 785
Sse9I	AATT	6 cut(s)	368, 510, 684, 779, 841, 895
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	2 cut(s)	306, 342
SspMI	CTAG	1 cut(s)	867
SstI	GAGCTC	1 cut(s)	565
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	4 cut(s)	65, 345, 556, 590
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	3 cut(s)	217, 469, 803
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	1 cut(s)	120
TasI	AATT	6 cut(s)	368, 510, 684, 779, 841, 895
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	1 cut(s)	344
Tru1I	TTAA	2 cut(s)	894, 898
Tru9I	TTAA	2 cut(s)	894, 898
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	5 cut(s)	217, 241, 287, 504, 655
Tsp45I	GTSAC	5 cut(s)	217, 241, 287, 504, 655
TspDTI	ATGAA	3 cut(s)	93, 264, 812
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	2 cut(s)	522, 785
XapI	RAATTY	1 cut(s)	684
XceI	RCATGY	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	1 cut(s)	867
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.