Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008258

Physical Location & Seq

Genomic Coordinates Reverse (-)

30147530 .. 30150251

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1206900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCCTGAGAAGGAAGTTTCAAGTGTCCTGAAAAAACCGCGTGCTGTGGTGAGGAAGTTCTTGGCTAGGCCTCAGCATGAAGGAGTTGGAGCCATTGTTAGAAGGAGCATAGGGAGGTTTGAGCTGAAATACTTTGATCCTTTCCTTGTTTTGGATGAGTTCTCAGTTACTGCTCCTGCTGGTTTTCCGGATCATCCACACAGAGGTTTTGAGACAGTGACCTACATGTTGCAGGGGGCTGTGACGCATGAAGATTTTGAAGGGCACAAGGGGACAATAGGAGCCGGTGACTTACAGTGGATGACCGCCGGAAGAGGCATCCTTCACTCGGAAATGCCTGCCGCCCAGGGAACCCAAAAGGGTTTACAGTTGTGGATAAACCTATCCTCCAAGCATAAAATGATTGATCCAAAGTATCAAGAACTGCTGAGCAAGGACATTGCAGAGGCTTCAAAAGATGGGATCAAAGTTAGAGTAATAGCAGGAGAAGCCTTGGGAACAAAGTCACCAATTTACACAAGGACCCCAACCATGTACTTAGACTTCACACTGAAACAAGGAGCTCACTTGCAACAACCAATACCAACATCATGGAATGCGTTTGTCTATGTGTTGGAGGGGGAGGGAATTTTTGGCAGTTCAAAATCTTTGCCTGTGACAGCCCACCACCTTCTTCTTCTTGGGATATCTGGGGATGGCTTGGAGACATGGAACAAGTCTTCCAAAACCCTAAGATTTATCTTGGTTGGAGGTGAGCCTTTGGGGGAGCCTATAACGCAATTTGGCCCCTTTGTGATGAACACTCAGGAAGAGATTGACCAGACTATTGATGATTTTGAAAATTGTGTCAACGGATTTGAGAAGGCTAGACATTGGAGATCTGGAGATTTACTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

300

Amino Acids

33.19

Weight (kDa)

6.27

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	33 - 126	2.8e-31	Pirin
Pirin_C	PF05726	179 - 284	2.4e-33	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50590 AT1G50590 AT1G50590
fragaria_vesca	FvH4_3g23750
malus_domestica	MD03G1190300.v1.1 MD11G1206900.v1.1
prunus_persica	Prupe.4G229700_v2.0.a1
pyrus_communis	pycom03g14310 pycom11g17990
rosa_chinensis	RchiOBHm_Chr5g0041911 RchiOBHm_Chr5g0041961
rosa_laevigata	RLG00000034105
rosa_multiflora	Rmu_co8239403.1_g000001 Rmu_sc0009443.1_g000006 Rmu_sc0010997.1_g000001
rosa_rugosa	Rorug05G0197300
rosa_samantha	Rh5AG281800 Rh5AG282200 Rh5BG287300 Rh5BG287800 Rh5CG319600 Rh5DG296700
rosa_wichuraiana	Rw0G001360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	40
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	3 cut(s)	38, 306, 342
AclWI	GGATC	4 cut(s)	131, 198, 401, 470
AcsI	RAATTY	1 cut(s)	627
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	3 cut(s)	151, 203, 328
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	5 cut(s)	21, 260, 453, 642, 839
AjnI	CCWGG	1 cut(s)	345
AloI	GAACNNNNNNTCC	2 cut(s)	704, 736
AluBI	AGCT	2 cut(s)	124, 563
AluI	AGCT	2 cut(s)	124, 563
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	206, 698
AlwI	GGATC	4 cut(s)	131, 198, 401, 470
AlwNI	CAGNNNCTG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	68, 784
ApoI	RAATTY	1 cut(s)	627
AspS9I	GGNCC	2 cut(s)	522, 785
AsuHPI	GGTGA	4 cut(s)	61, 299, 498, 764
AvaII	GGWCC	1 cut(s)	522
BaeGI	GKGCMC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	565
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	452, 689
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	206, 698
BfaI	CTAG	2 cut(s)	66, 867
BglII	AGATCT	1 cut(s)	878
BisI	GCNGC	1 cut(s)	342
BlpI	GCTNAGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	522, 785
BmiI	GGNNCC	6 cut(s)	91, 283, 352, 524, 768, 787
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu1102I	GCTNAGC	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	345, 346, 492
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 371, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 203, 328
Bse118I	RCCGGY	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	438
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	345, 346, 492
BseGI	GGATG	5 cut(s)	160, 193, 306, 318, 700
BseLI	CCNNNNNNNGG	3 cut(s)	151, 203, 328
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	4 cut(s)	86, 177, 419, 818
BseSI	GKGCMC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	2 cut(s)	70, 786
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	3 cut(s)	188, 285, 309
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	3 cut(s)	151, 203, 328
BsmAI	GTCTC	2 cut(s)	206, 698
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	70, 786
Bsp1286I	GDGCHC	2 cut(s)	267, 565
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	136, 190, 406, 462, 878
Bsp1720I	GCTNAGC	1 cut(s)	428
BspACI	CCGC	3 cut(s)	38, 306, 342
BspANI	GGCC	2 cut(s)	70, 786
BspCNI	CTCAG	4 cut(s)	85, 176, 420, 817
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	40
BspLI	GGNNCC	6 cut(s)	91, 283, 352, 524, 768, 787
BspPI	GGATC	4 cut(s)	131, 198, 401, 470
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	3 cut(s)	345, 346, 492
BssMI	GATC	5 cut(s)	136, 190, 406, 462, 878
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	217, 297, 369
Bst6I	CTCTTC	2 cut(s)	307, 804
BstC8I	GCNNGC	2 cut(s)	42, 339
BstDEI	CTNAG	7 cut(s)	6, 72, 163, 428, 538, 731, 804
BstF5I	GGATG	5 cut(s)	160, 193, 306, 318, 700
BstFNI	CGCG	1 cut(s)	40
BstKTI	GATC	5 cut(s)	139, 193, 409, 465, 881
BstMAI	GTCTC	2 cut(s)	206, 698
BstMBI	GATC	5 cut(s)	136, 190, 406, 462, 878
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 775
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	1 cut(s)	878
BstXI	CCANNNNNNTGG	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	878
BsuRI	GGCC	2 cut(s)	70, 786
BtsCI	GGATG	5 cut(s)	160, 193, 306, 318, 700
BtsIMutI	CAGTG	3 cut(s)	222, 302, 548
Cac8I	GCNNGC	2 cut(s)	42, 339
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	522, 785
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	6 cut(s)	77, 226, 248, 532, 591, 708
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	7 cut(s)	6, 72, 163, 428, 538, 731, 804
DpnI	GATC	5 cut(s)	138, 192, 408, 464, 880
DpnII	GATC	5 cut(s)	136, 190, 406, 462, 878
Eam1104I	CTCTTC	2 cut(s)	307, 804
EarI	CTCTTC	2 cut(s)	307, 804
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	492
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	522
Eco53kI	GAGCTC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	345
EcoRV	GATATC	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	6 cut(s)	80, 229, 251, 535, 594, 711
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	6 cut(s)	76, 225, 247, 531, 590, 707
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	5 cut(s)	167, 180, 305, 313, 707
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	2 cut(s)	66, 867
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	70, 786
HapII	CCGG	3 cut(s)	188, 285, 309
HgaI	GACGC	1 cut(s)	253
Hin1II	CATG	6 cut(s)	80, 229, 251, 535, 594, 711
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HpaII	CCGG	3 cut(s)	188, 285, 309
HphI	GGTGA	4 cut(s)	61, 299, 498, 764
Hpy166II	GTNNAC	2 cut(s)	365, 850
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	5 cut(s)	28, 188, 419, 806, 882
Hpy8I	GTNNAC	2 cut(s)	365, 850
HpyAV	CCTTC	7 cut(s)	4, 74, 96, 254, 332, 680, 856
HpyCH4III	ACNGT	3 cut(s)	217, 297, 369
HpyCH4V	TGCA	3 cut(s)	232, 443, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 775
HpyF3I	CTNAG	7 cut(s)	6, 72, 163, 428, 538, 731, 804
Hsp92II	CATG	6 cut(s)	80, 229, 251, 535, 594, 711
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	136, 190, 406, 462, 878
LmnI	GCTCC	6 cut(s)	89, 105, 178, 281, 560, 766
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	2 cut(s)	66, 867
MaeIII	GTNAC	6 cut(s)	166, 217, 241, 287, 504, 655
MalI	GATC	5 cut(s)	138, 192, 408, 464, 880
MboI	GATC	5 cut(s)	136, 190, 406, 462, 878
MboII	GAAGA	6 cut(s)	263, 324, 665, 668, 711, 821
MflI	RGATCY	1 cut(s)	878
MhlI	GDGCHC	2 cut(s)	267, 565
MluCI	AATT	4 cut(s)	510, 627, 779, 841
MmeI	TCCRAC	3 cut(s)	67, 594, 727
MroI	TCCGGA	1 cut(s)	187
MspI	CCGG	3 cut(s)	188, 285, 309
MspR9I	CCNGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	488, 775
NdeII	GATC	5 cut(s)	136, 190, 406, 462, 878
NlaIII	CATG	6 cut(s)	80, 229, 251, 535, 594, 711
NlaIV	GGNNCC	6 cut(s)	91, 283, 352, 524, 768, 787
NmuCI	GTSAC	5 cut(s)	217, 241, 287, 504, 655
NspI	RCATGY	1 cut(s)	229
PasI	CCCWGGG	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	70
PciI	ACATGT	1 cut(s)	225
PctI	GAATGC	1 cut(s)	601
PkrI	GCNGC	1 cut(s)	343
PpuMI	RGGWCCY	1 cut(s)	522
PscI	ACATGT	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	565
Psp5II	RGGWCCY	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	6 cut(s)	91, 283, 352, 524, 768, 787
PspPI	GGNCC	2 cut(s)	522, 785
PspPPI	RGGWCCY	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	878
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
SacI	GAGCTC	1 cut(s)	565
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	5 cut(s)	136, 190, 406, 462, 878
Sau96I	GGNCC	2 cut(s)	522, 785
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	267, 565
SetI	ASST	8 cut(s)	119, 126, 208, 224, 384, 565, 672, 754
SfaNI	GCATC	1 cut(s)	327
SinI	GGWCC	1 cut(s)	522
Sse9I	AATT	4 cut(s)	510, 627, 779, 841
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	3 cut(s)	38, 306, 342
SspMI	CTAG	2 cut(s)	66, 867
SstI	GAGCTC	1 cut(s)	565
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	3 cut(s)	217, 297, 369
TasI	AATT	4 cut(s)	510, 627, 779, 841
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	1 cut(s)	344
TscAI	CASTG	3 cut(s)	222, 302, 555
TseFI	GTSAC	5 cut(s)	217, 241, 287, 504, 655
Tsp45I	GTSAC	5 cut(s)	217, 241, 287, 504, 655
TspDTI	ATGAA	3 cut(s)	93, 264, 812
TspGWI	ACGGA	1 cut(s)	867
TspRI	CASTG	3 cut(s)	222, 302, 555
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	2 cut(s)	66, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.