Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010997.1

Orthogroup ID

OG0008258

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1384

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 361 bp

atgtctgagacagaagtttcacttggttttaaagaaggtcgagttgtggtgaggaagttcttggctaggcctcagcatgaaggagttggtgccattgttagaagaagcattgggaggtttgagctgagatactttgatccttttcttgttctggatgagttctcagttactgctcctgctggattccctgatcatccacatagagggtttgagacggtgacctacatgttgcagggagccatcacacatgaagatttcgaagggcacaaagggacaataggatccggcgatgtgcagtggatgactgcaggtagaggtattgttcactcggaaatgcctgcagcccaaggaacccaaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

120

Amino Acids

13.3

Weight (kDa)

6.28

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50590 AT1G50590 AT1G50590
fragaria_vesca	FvH4_3g23750
malus_domestica	MD03G1190300.v1.1 MD11G1206900.v1.1
prunus_persica	Prupe.4G229700_v2.0.a1
pyrus_communis	pycom03g14310 pycom11g17990
rosa_chinensis	RchiOBHm_Chr5g0041911 RchiOBHm_Chr5g0041961
rosa_laevigata	RLG00000034105
rosa_multiflora	Rmu_co8239403.1_g000001 Rmu_sc0009443.1_g000006 Rmu_sc0010997.1_g000001
rosa_rugosa	Rorug05G0197300
rosa_samantha	Rh5AG281800 Rh5AG282200 Rh5BG287300 Rh5BG287800 Rh5CG319600 Rh5DG296700
rosa_wichuraiana	Rw0G001360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	89
AclWI	GGATC	3 cut(s)	131, 276, 289
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	2 cut(s)	2, 206
AlwI	GGATC	3 cut(s)	131, 276, 289
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	61, 229
AsuII	TTCGAA	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	1 cut(s)	248
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	2, 206
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	2 cut(s)	306, 339
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
BmiI	GGNNCC	4 cut(s)	91, 238, 283, 352
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	3 cut(s)	160, 193, 306
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	3 cut(s)	86, 116, 177
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	2, 206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	136, 190, 281
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	3 cut(s)	85, 117, 176
BspLI	GGNNCC	4 cut(s)	91, 238, 283, 352
BspMAI	CTGCAG	2 cut(s)	310, 343
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	3 cut(s)	131, 276, 289
BspT104I	TTCGAA	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	3 cut(s)	136, 190, 281
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	4 cut(s)	6, 72, 125, 163
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	3 cut(s)	160, 193, 306
BstKTI	GATC	3 cut(s)	139, 193, 284
BstMAI	GTCTC	2 cut(s)	2, 206
BstMBI	GATC	3 cut(s)	136, 190, 281
BstNSI	RCATGY	1 cut(s)	229
BstPI	GGTNACC	1 cut(s)	217
BstSFI	CTRYAG	2 cut(s)	306, 339
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	160, 193, 306
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	339
CaiI	CAGNNNCTG	1 cut(s)	170
CviAII	CATG	3 cut(s)	77, 226, 248
CviJI	RGCY	5 cut(s)	65, 70, 124, 239, 344
CviKI_1	RGCY	5 cut(s)	65, 70, 124, 239, 344
DdeI	CTNAG	4 cut(s)	6, 72, 125, 163
DpnI	GATC	3 cut(s)	138, 192, 283
DpnII	GATC	3 cut(s)	136, 190, 281
DraI	TTTAAA	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	3 cut(s)	80, 229, 251
FaiI	YATR	4 cut(s)	78, 201, 227, 249
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	3 cut(s)	76, 225, 247
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	3 cut(s)	167, 180, 313
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	3 cut(s)	80, 229, 251
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	61, 229
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	7, 331
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	29, 74, 254
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	232, 295, 308, 341
HpyF3I	CTNAG	4 cut(s)	6, 72, 125, 163
Hsp92II	CATG	3 cut(s)	80, 229, 251
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	136, 190, 281
LmnI	GCTCC	2 cut(s)	178, 236
LpnPI	CCDG	8 cut(s)	137, 165, 189, 201, 218, 294, 298, 351
Lsp1109I	GCAGC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	166, 217
MalI	GATC	3 cut(s)	138, 192, 283
MboI	GATC	3 cut(s)	136, 190, 281
MboII	GAAGA	2 cut(s)	114, 263
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	45, 81, 108, 197, 308
MseI	TTAA	1 cut(s)	30
MspI	CCGG	1 cut(s)	285
NdeII	GATC	3 cut(s)	136, 190, 281
NlaIII	CATG	3 cut(s)	80, 229, 251
NlaIV	GGNNCC	4 cut(s)	91, 238, 283, 352
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	258
PceI	AGGCCT	1 cut(s)	70
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	343
PscI	ACATGT	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	217
PspN4I	GGNNCC	4 cut(s)	91, 238, 283, 352
PstI	CTGCAG	2 cut(s)	310, 343
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	3 cut(s)	136, 190, 281
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	6 cut(s)	40, 119, 126, 224, 313, 319
SfcI	CTRYAG	2 cut(s)	306, 339
SfuI	TTCGAA	1 cut(s)	258
SseBI	AGGCCT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	40, 258
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	93, 264
TspRI	CASTG	1 cut(s)	302
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.