Rorug05G0197300

Belongs to the pirin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008258
Physical Location & Seq
Reverse (-)
19528240 .. 19529343
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0197300.1

Sequence Viewer

Length: 1104 bp
ATGGATAGCATGGATGAAGAAGGGCTTCGTTTCAGTGACTACAAGTATCATAAGCAAGTGTTTTCAGACGAAGATGAAGATGCACCGCTGGGGTTCGAAAGCTTCGCTGATTGTTTTGGAGAGGTTCCGTTCCCAGAAACCATGGCCCCCAACAAACCAATAGGATCGGAAGCAGAAATGGAGATGAATGGATGTAGCCATTTCAAGAAGGTAGTTCCTGATTTAGCGGCTGAATTTGGAAATGTGGAATTGAATGGGAGAAATTTCAAAGATATCACATTTGAGGACGTTAAACATTTATGGTTTCGAACCATAGATGAAGCAGAGAAGTTCTACAAGTATTACTCCCATGTGGTCGGCTTCAGCATAAGGAAAGCTAAGAAGGACCTACACAAAACGAAAAAAACAGTATATCGAAGGCAGTGGGTGTGTTCTAAAGCTGGACGACATGTTTCGGTACAAAAGAGCGCAGAGTTTGGAAGTGCTGGAATCAATGAAGGCCCCAATGGTGATAAGAAAAAGGTGTCGAGGAACAGATTGCTTCGGGGAAGAAGGATAACTAGATGTGGCTGCCCTGCCCAGTTGATGATTATGTGGTCTACTCCGCAAAATTTGTTCTATGTTTCAAAGTTTATTACGCAGCACAATCACGATCTTGTTATCGCCCCTGAAGTTCATTTCCTTAGGTCCCACCGTAAGGTTGAGGGACATGACATTGCACAGGTTGAATCCCTCCTTCAAGCACAGGTCTCCATTAGCCGAGCGTATGAATTTCTGGCGTACCAGGCCGGTGGATATCATAACATGCGATTCCTGCTAAAGGATCTTTACAACAAGCTTCGTCCAAAGATATTGAAAAATGCTGACGAGGGTGATGCAGAAATGGCTGTAAGACGGATGAAAGCAAAAGGATCGGGTGAGAAAGAATTCTACTTCGAGTACACAGTTGATAAAGACGGAAGGCTTGCAAACATGTTTTGGCGGGACCATCAATCACTTTTGGACTACACTGCTTACGGGGATGTGTTGATTGTAGACAGTACATACAAGATGAACAGGTATAGTAAGCCTATGGTGTTATTTGTCGGGTGTAACAATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pirin Pirin_C

Protein Analysis

367

Amino Acids

42.46

Weight (kDa)

8.66

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 110 - 220 3.9e-17 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 599, 1035
AciI CCGC 4 cut(s) 86, 227, 605, 982
AclWI GGATC 3 cut(s) 172, 831, 919
AcsI RAATTY 5 cut(s) 233, 262, 610, 770, 926
AcuI CTGAAG 2 cut(s) 346, 690
AfaI GTAC 4 cut(s) 459, 782, 941, 1042
AfiI CCNNNNNNNGG 2 cut(s) 697, 820
AflIII ACRYGT 2 cut(s) 448, 972
AgsI TTSAA 7 cut(s) 205, 253, 268, 627, 728, 740, 856
AjnI CCWGG 1 cut(s) 783
AluBI AGCT 4 cut(s) 102, 377, 440, 838
AluI AGCT 4 cut(s) 102, 377, 440, 838
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 3 cut(s) 172, 831, 919
AoxI GGCC 3 cut(s) 144, 499, 786
ApeKI GCWGC 2 cut(s) 570, 640
ApoI RAATTY 5 cut(s) 233, 262, 610, 770, 926
Asp700I GAANNNNTTC 2 cut(s) 24, 926
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 5 cut(s) 145, 385, 500, 687, 985
AsuHPI GGTGA 3 cut(s) 521, 884, 929
AsuII TTCGAA 2 cut(s) 96, 307
AvaII GGWCC 3 cut(s) 385, 687, 985
AxyI CCTNAGG 1 cut(s) 683
BbvI GCAGC 2 cut(s) 557, 652
BccI CCATC 1 cut(s) 996
BcgI CGANNNNNNTGC 4 cut(s) 857, 891, 894, 928
BciT130I CCWGG 1 cut(s) 785
BcoDI GTCTC 1 cut(s) 754
BfaI CTAG 1 cut(s) 561
BisI GCNGC 3 cut(s) 228, 571, 641
BlsI GCNGC 3 cut(s) 229, 572, 642
Bme1390I CCNGG 1 cut(s) 785
Bme18I GGWCC 3 cut(s) 385, 687, 985
BmgT120I GGNCC 5 cut(s) 145, 385, 500, 687, 985
BmiI GGNNCC 5 cut(s) 126, 147, 502, 689, 986
BmrFI CCNGG 1 cut(s) 785
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 2 cut(s) 70, 865
BmuI ACTGGG 1 cut(s) 574
Bpu14I TTCGAA 2 cut(s) 96, 307
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 2 cut(s) 697, 820
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 1 cut(s) 580
Bse21I CCTNAGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 714
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 4 cut(s) 19, 197, 903, 1027
BseLI CCNNNNNNNGG 2 cut(s) 697, 820
BseMI GCAATG 1 cut(s) 714
BseNI ACTGG 1 cut(s) 580
BseXI GCAGC 2 cut(s) 557, 652
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 3 cut(s) 146, 501, 788
BsiSI CCGG 1 cut(s) 789
BslFI GGGAC 3 cut(s) 673, 720, 998
BslI CCNNNNNNNGG 2 cut(s) 697, 820
BsmAI GTCTC 1 cut(s) 754
BsmFI GGGAC 3 cut(s) 673, 720, 998
BsnI GGCC 3 cut(s) 146, 501, 788
Bso31I GGTCTC 1 cut(s) 754
Bsp119I TTCGAA 2 cut(s) 96, 307
Bsp143I GATC 4 cut(s) 164, 652, 823, 911
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 4 cut(s) 86, 227, 605, 982
BspANI GGCC 3 cut(s) 146, 501, 788
BspLI GGNNCC 5 cut(s) 126, 147, 502, 689, 986
BspPI GGATC 3 cut(s) 172, 831, 919
BspT104I TTCGAA 2 cut(s) 96, 307
BspTNI GGTCTC 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 714
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 1 cut(s) 580
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 4 cut(s) 164, 652, 823, 911
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 4 cut(s) 409, 695, 946, 1040
BstBI TTCGAA 2 cut(s) 96, 307
BstC8I GCNNGC 1 cut(s) 966
BstDEI CTNAG 2 cut(s) 378, 683
BstDSI CCRYGG 1 cut(s) 141
BstENI CCTNNNNNAGG 1 cut(s) 818
BstF5I GGATG 4 cut(s) 19, 197, 903, 1027
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 4 cut(s) 167, 655, 826, 914
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 4 cut(s) 164, 652, 823, 911
BstMWI GCNNNNNNNGC 3 cut(s) 785, 814, 884
BstNI CCWGG 1 cut(s) 785
BstNSI RCATGY 3 cut(s) 452, 808, 976
BstSCI CCNGG 1 cut(s) 783
BstV1I GCAGC 2 cut(s) 557, 652
BstX2I RGATCY 1 cut(s) 823
BstXI CCANNNNNNTGG 1 cut(s) 791
BstYI RGATCY 1 cut(s) 823
Bsu36I CCTNAGG 1 cut(s) 683
BsuRI GGCC 3 cut(s) 146, 501, 788
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 4 cut(s) 19, 197, 903, 1027
BtsI GCAGTG 2 cut(s) 428, 1008
BtsIMutI CAGTG 4 cut(s) 40, 428, 1008, 1099
Cac8I GCNNGC 1 cut(s) 966
CfoI GCGC 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 5 cut(s) 145, 385, 500, 687, 985
Csp6I GTAC 4 cut(s) 458, 781, 940, 1041
CviAII CATG 7 cut(s) 10, 142, 350, 449, 710, 805, 973
CviQI GTAC 4 cut(s) 458, 781, 940, 1041
DdeI CTNAG 2 cut(s) 378, 683
DpnI GATC 4 cut(s) 166, 654, 825, 913
DpnII GATC 4 cut(s) 164, 652, 823, 911
Eco130I CCWWGG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 754
Eco32I GATATC 2 cut(s) 274, 797
Eco47I GGWCC 3 cut(s) 385, 687, 985
Eco57I CTGAAG 2 cut(s) 346, 690
Eco81I CCTNAGG 1 cut(s) 683
EcoNI CCTNNNNNAGG 1 cut(s) 818
EcoO109I RGGNCCY 3 cut(s) 385, 500, 687
EcoRI GAATTC 1 cut(s) 926
EcoRII CCWGG 1 cut(s) 783
EcoRV GATATC 2 cut(s) 274, 797
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 7 cut(s) 13, 145, 353, 452, 713, 808, 976
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 3 cut(s) 673, 720, 998
FatI CATG 7 cut(s) 9, 141, 349, 448, 709, 804, 972
FauI CCCGC 1 cut(s) 975
FblI GTMKAC 2 cut(s) 599, 1035
Fnu4HI GCNGC 3 cut(s) 228, 571, 641
FokI GGATG 4 cut(s) 26, 204, 910, 1034
Fsp4HI GCNGC 3 cut(s) 228, 571, 641
FspBI CTAG 1 cut(s) 561
GlaI GCGC 1 cut(s) 469
GluI GCNGC 3 cut(s) 228, 571, 641
GsaI CCCAGC 1 cut(s) 92
HaeIII GGCC 3 cut(s) 146, 501, 788
HapII CCGG 1 cut(s) 789
HhaI GCGC 1 cut(s) 470
Hin1II CATG 7 cut(s) 13, 145, 353, 452, 713, 808, 976
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HindIII AAGCTT 2 cut(s) 100, 836
HinfI GANTC 3 cut(s) 489, 728, 810
HpaII CCGG 1 cut(s) 789
HphI GGTGA 3 cut(s) 521, 884, 929
Hpy166II GTNNAC 3 cut(s) 600, 942, 1036
Hpy188I TCNGA 2 cut(s) 67, 169
Hpy188III TCNNGA 3 cut(s) 205, 218, 650
Hpy8I GTNNAC 3 cut(s) 600, 942, 1036
HpyAV CCTTC 8 cut(s) 14, 202, 376, 411, 491, 546, 746, 954
HpyCH4III ACNGT 4 cut(s) 409, 695, 946, 1040
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 4 cut(s) 83, 719, 878, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 785, 814, 884
HpyF3I CTNAG 2 cut(s) 378, 683
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 7 cut(s) 13, 145, 353, 452, 713, 808, 976
HspAI GCGC 1 cut(s) 468
Kzo9I GATC 4 cut(s) 164, 652, 823, 911
Lsp1109I GCAGC 2 cut(s) 557, 652
LweI GCATC 2 cut(s) 70, 865
MaeI CTAG 1 cut(s) 561
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 35, 1091
MalI GATC 4 cut(s) 166, 654, 825, 913
MboI GATC 4 cut(s) 164, 652, 823, 911
MboII GAAGA 4 cut(s) 29, 83, 89, 561
MflI RGATCY 1 cut(s) 823
MluCI AATT 6 cut(s) 233, 248, 262, 610, 770, 926
MnlI CCTC 6 cut(s) 115, 277, 522, 697, 743, 862
MroXI GAANNNNTTC 2 cut(s) 24, 926
MseI TTAA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 1 cut(s) 789
MspR9I CCNGG 1 cut(s) 785
MvaI CCWGG 1 cut(s) 785
MwoI GCNNNNNNNGC 3 cut(s) 785, 814, 884
NcoI CCATGG 1 cut(s) 141
NdeII GATC 4 cut(s) 164, 652, 823, 911
NlaIII CATG 7 cut(s) 13, 145, 353, 452, 713, 808, 976
NlaIV GGNNCC 5 cut(s) 126, 147, 502, 689, 986
NmeAIII GCCGAG 1 cut(s) 785
NmuCI GTSAC 1 cut(s) 35
NspI RCATGY 3 cut(s) 452, 808, 976
NspV TTCGAA 2 cut(s) 96, 307
PciI ACATGT 2 cut(s) 448, 972
PdmI GAANNNNTTC 2 cut(s) 24, 926
PfeI GAWTC 3 cut(s) 489, 728, 810
PkrI GCNGC 3 cut(s) 229, 572, 642
PpuMI RGGWCCY 2 cut(s) 385, 687
PscI ACATGT 2 cut(s) 448, 972
Psp5II RGGWCCY 2 cut(s) 385, 687
Psp6I CCWGG 1 cut(s) 783
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 5 cut(s) 126, 147, 502, 689, 986
PspPI GGNCC 5 cut(s) 145, 385, 500, 687, 985
PspPPI RGGWCCY 2 cut(s) 385, 687
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 4 cut(s) 459, 782, 941, 1042
RsaNI GTAC 4 cut(s) 458, 781, 940, 1041
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 228, 571, 641
Sau3AI GATC 4 cut(s) 164, 652, 823, 911
Sau96I GGNCC 5 cut(s) 145, 385, 500, 687, 985
ScrFI CCNGG 1 cut(s) 785
SfaNI GCATC 2 cut(s) 70, 865
SfuI TTCGAA 2 cut(s) 96, 307
SinI GGWCC 3 cut(s) 385, 687, 985
Sse9I AATT 6 cut(s) 233, 248, 262, 610, 770, 926
SsiI CCGC 4 cut(s) 86, 227, 605, 982
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 4 cut(s) 409, 695, 946, 1040
TaiI ACGT 1 cut(s) 291
TaqI TCGA 5 cut(s) 96, 307, 415, 527, 936
TasI AATT 6 cut(s) 233, 248, 262, 610, 770, 926
TatI WGTACW 2 cut(s) 939, 1040
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 3 cut(s) 489, 728, 810
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 3 cut(s) 40, 428, 1015
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 2 cut(s) 570, 640
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 9 cut(s) 30, 90, 200, 333, 510, 665, 783, 914, 1067
TspGWI ACGGA 3 cut(s) 117, 910, 972
TspRI CASTG 3 cut(s) 40, 428, 1015
VpaK11BI GGWCC 3 cut(s) 385, 687, 985
XagI CCTNNNNNAGG 1 cut(s) 818
XapI RAATTY 5 cut(s) 233, 262, 610, 770, 926
XceI RCATGY 3 cut(s) 452, 808, 976
XmiI GTMKAC 2 cut(s) 599, 1035
XmnI GAANNNNTTC 2 cut(s) 24, 926
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.