Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008258

Physical Location & Seq

Genomic Coordinates Forward (+)

36805007 .. 36807238

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCTGAGACAGACGTTTCACTTGGTTTTAAAGAAGGTCGAGTTGTGGTGAGGAAGTTCTTGGCTAGGCCTCAGCATGAAGGAGTTGGTGCCATTGTTAGGAGAAGCATTGGGAGGTTTGAGCTGAGATACTTTGATCCTTTTCTTGTTCTGGATGAGTTCTCAGTTACTGCTCCTGCTGGATTCCCTGATCATCCACATAGAGGGTTTGAGACGGTGACCTACATGTTGCAGGGAGCCATCACACATGAAGATTTCGAAGGGCACAAAGGGACGATAGGAGCCGGCGACGTGCAGTGGATGACTGCAGGTAGAGGTATTGTTCACTCAGAAATGCCTGCAGCCCAAGGAACCCAAAAGGGTCTACAGTTGTGGATAAACCTCTCCTCCAAACATAAAATGATTGAACCAAAGTACCAAGAAATGGTGAGCAAGGACATTGCAGAGGCTACAAAAGATGGGATCAAGGTTAGAGTAATAGCTGGAGAAGCCTTGGGAACAAAGTCACCAATCTATACAAGAACCCCAACCATGTACTTGGACTTCACTCTCAAACCAGGAGCTCACCTTCAGCAACCAATACCAACATCATGGAATGCATTTGTATATGTCTTGGAGGGGGAAGGCATTTTTGGAACTCCAAAGTCTTTGCCAGTGGCAGGTCACCACCTTCTTCTTCTAGGATCTGGGGATGGGTTGGAGGCATGGAACAAGTCTTCCAAGAACCTTAGGTTTATATTAGTTGGAGGTCAACCTTTAGGGGAGCCTGTAAAGCAACTAGGGCCCTTTGTGATGAACACTGAGGAAGAGATCGATCAAACCATTGATGACTTTGAAAACTGTGTCAATGGATTTGAGAAGGCAACACATTGGAGATCTGGATCTGCACTTAGCCTTGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

302

Amino Acids

33.21

Weight (kDa)

6.01

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	33 - 126	5.8e-32	Pirin
Pirin_C	PF05726	179 - 283	3e-32	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50590 AT1G50590 AT1G50590
fragaria_vesca	FvH4_3g23750
malus_domestica	MD03G1190300.v1.1 MD11G1206900.v1.1
prunus_persica	Prupe.4G229700_v2.0.a1
pyrus_communis	pycom03g14310 pycom11g17990
rosa_chinensis	RchiOBHm_Chr5g0041911 RchiOBHm_Chr5g0041961
rosa_laevigata	RLG00000034105
rosa_multiflora	Rmu_co8239403.1_g000001 Rmu_sc0009443.1_g000006 Rmu_sc0010997.1_g000001
rosa_rugosa	Rorug05G0197300
rosa_samantha	Rh5AG281800 Rh5AG282200 Rh5BG287300 Rh5BG287800 Rh5CG319600 Rh5DG296700
rosa_wichuraiana	Rw0G001360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	299, 650
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	364
AclWI	GGATC	4 cut(s)	131, 470, 691, 889
AcuI	CTGAAG	1 cut(s)	554
AfaI	GTAC	2 cut(s)	416, 536
AfiI	CCNNNNNNNGG	4 cut(s)	99, 203, 424, 659
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	407, 836
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	556
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	3 cut(s)	124, 482, 563
AluI	AGCT	3 cut(s)	124, 482, 563
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	2, 206
AlwI	GGATC	4 cut(s)	131, 470, 691, 889
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	68, 782
ApaI	GGGCCC	1 cut(s)	786
ApeKI	GCWGC	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	782, 783
AsuHPI	GGTGA	6 cut(s)	61, 229, 439, 498, 557, 656
AsuII	TTCGAA	1 cut(s)	258
AxyI	CCTNAGG	1 cut(s)	728
BaeGI	GKGCMC	2 cut(s)	267, 786
BaeI	ACNNNNGTAYC	2 cut(s)	398, 431
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	565, 786
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	3 cut(s)	248, 452, 686
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	2, 206
BfaI	CTAG	3 cut(s)	66, 680, 779
BfmI	CTRYAG	3 cut(s)	306, 339, 365
BfuAI	ACCTGC	2 cut(s)	299, 650
BglII	AGATCT	1 cut(s)	875
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	558
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	782, 783
BmiI	GGNNCC	6 cut(s)	91, 238, 283, 352, 765, 784
BmrFI	CCNGG	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	708
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	813
BsaBI	GATNNNNATC	1 cut(s)	880
BsaJI	CCNNGG	2 cut(s)	346, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 203, 424, 659
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	653
Bse21I	CCTNAGG	1 cut(s)	728
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	880
BseBI	CCWGG	1 cut(s)	558
BseCI	ATCGAT	1 cut(s)	813
BseDI	CCNNGG	2 cut(s)	346, 492
BseGI	GGATG	4 cut(s)	160, 193, 306, 697
BseJI	GATNNNNATC	1 cut(s)	880
BseLI	CCNNNNNNNGG	4 cut(s)	99, 203, 424, 659
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	5 cut(s)	86, 116, 177, 342, 792
BseNI	ACTGG	1 cut(s)	653
BseRI	GAGGAG	1 cut(s)	376
BseSI	GKGCMC	2 cut(s)	267, 786
BseXI	GCAGC	1 cut(s)	353
BsgI	GTGCAG	2 cut(s)	314, 870
BshFI	GGCC	2 cut(s)	70, 784
BshNI	GGYRCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	813
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	4 cut(s)	99, 203, 424, 659
BsmAI	GTCTC	2 cut(s)	2, 206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	70, 784
Bsp119I	TTCGAA	1 cut(s)	258
Bsp120I	GGGCCC	1 cut(s)	782
Bsp1286I	GDGCHC	3 cut(s)	267, 565, 786
Bsp143I	GATC	8 cut(s)	136, 190, 462, 683, 810, 814, 875, 881
BspANI	GGCC	2 cut(s)	70, 784
BspCNI	CTCAG	5 cut(s)	85, 117, 176, 341, 793
BspDI	ATCGAT	1 cut(s)	813
BspLI	GGNNCC	6 cut(s)	91, 238, 283, 352, 765, 784
BspMAI	CTGCAG	2 cut(s)	310, 343
BspMI	ACCTGC	2 cut(s)	299, 650
BspPI	GGATC	4 cut(s)	131, 470, 691, 889
BspT104I	TTCGAA	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	653
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	346, 492
BssMI	GATC	8 cut(s)	136, 190, 462, 683, 810, 814, 875, 881
BssT1I	CCWWGG	2 cut(s)	346, 492
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	217, 369, 842
Bst6I	CTCTTC	1 cut(s)	801
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	286, 339
BstDEI	CTNAG	8 cut(s)	6, 72, 125, 163, 328, 728, 801, 890
BstEII	GGTNACC	2 cut(s)	217, 662
BstF5I	GGATG	4 cut(s)	160, 193, 306, 697
BstKTI	GATC	8 cut(s)	139, 193, 465, 686, 813, 817, 878, 884
BstMAI	GTCTC	2 cut(s)	2, 206
BstMBI	GATC	8 cut(s)	136, 190, 462, 683, 810, 814, 875, 881
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 772, 781
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	229
BstPI	GGTNACC	2 cut(s)	217, 662
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	3 cut(s)	306, 339, 365
BstSLI	GKGCMC	2 cut(s)	267, 786
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	3 cut(s)	683, 875, 881
BstXI	CCANNNNNNTGG	2 cut(s)	538, 591
BstYI	RGATCY	3 cut(s)	683, 875, 881
Bsu15I	ATCGAT	1 cut(s)	813
Bsu36I	CCTNAGG	1 cut(s)	728
BsuRI	GGCC	2 cut(s)	70, 784
BsuTUI	ATCGAT	1 cut(s)	813
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	4 cut(s)	160, 193, 306, 697
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	3 cut(s)	302, 660, 798
BveI	ACCTGC	2 cut(s)	299, 650
Cac8I	GCNNGC	2 cut(s)	286, 339
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	782, 783
ClaI	ATCGAT	1 cut(s)	813
Csp6I	GTAC	2 cut(s)	415, 535
CviAII	CATG	6 cut(s)	77, 226, 248, 532, 591, 705
CviQI	GTAC	2 cut(s)	415, 535
DdeI	CTNAG	8 cut(s)	6, 72, 125, 163, 328, 728, 801, 890
DpnI	GATC	8 cut(s)	138, 192, 464, 685, 812, 816, 877, 883
DpnII	GATC	8 cut(s)	136, 190, 462, 683, 810, 814, 875, 881
DraI	TTTAAA	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	346, 492
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	2 cut(s)	565, 786
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	554
Eco81I	CCTNAGG	1 cut(s)	728
Eco91I	GGTNACC	2 cut(s)	217, 662
EcoICRI	GAGCTC	1 cut(s)	563
EcoO109I	RGGNCCY	2 cut(s)	782, 783
EcoO65I	GGTNACC	2 cut(s)	217, 662
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	2 cut(s)	346, 492
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	2 cut(s)	565, 786
ErhI	CCWWGG	2 cut(s)	346, 492
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	6 cut(s)	80, 229, 251, 535, 594, 708
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	6 cut(s)	76, 225, 247, 531, 590, 704
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	4 cut(s)	167, 180, 313, 704
FriOI	GRGCYC	2 cut(s)	565, 786
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	3 cut(s)	66, 680, 779
GluI	GCNGC	1 cut(s)	342
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	70, 784
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	6 cut(s)	80, 229, 251, 535, 594, 708
HincII	GTYRAC	1 cut(s)	752
HindII	GTYRAC	1 cut(s)	752
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	6 cut(s)	61, 229, 439, 498, 557, 656
Hpy166II	GTNNAC	3 cut(s)	325, 365, 752
Hpy188I	TCNGA	2 cut(s)	7, 331
Hpy188III	TCNNGA	2 cut(s)	152, 879
Hpy8I	GTNNAC	3 cut(s)	325, 365, 752
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	7 cut(s)	29, 74, 254, 578, 617, 680, 853
HpyCH4III	ACNGT	3 cut(s)	217, 369, 842
HpyCH4IV	ACGT	2 cut(s)	15, 291
HpyCH4V	TGCA	7 cut(s)	232, 295, 308, 341, 443, 599, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 772, 781
HpyF3I	CTNAG	8 cut(s)	6, 72, 125, 163, 328, 728, 801, 890
HpySE526I	ACGT	2 cut(s)	15, 291
Hsp92II	CATG	6 cut(s)	80, 229, 251, 535, 594, 708
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	8 cut(s)	136, 190, 462, 683, 810, 814, 875, 881
LmnI	GCTCC	5 cut(s)	178, 236, 281, 560, 763
Lsp1109I	GCAGC	1 cut(s)	353
MaeI	CTAG	3 cut(s)	66, 680, 779
MaeII	ACGT	2 cut(s)	15, 291
MaeIII	GTNAC	4 cut(s)	166, 217, 504, 662
MalI	GATC	8 cut(s)	138, 192, 464, 685, 812, 816, 877, 883
MboI	GATC	8 cut(s)	136, 190, 462, 683, 810, 814, 875, 881
MboII	GAAGA	5 cut(s)	263, 665, 668, 708, 818
MflI	RGATCY	3 cut(s)	683, 875, 881
MhlI	GDGCHC	3 cut(s)	267, 565, 786
MmeI	TCCRAC	2 cut(s)	678, 724
Mph1103I	ATGCAT	1 cut(s)	601
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	1 cut(s)	30
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	3 cut(s)	488, 772, 781
NaeI	GCCGGC	1 cut(s)	286
NdeII	GATC	8 cut(s)	136, 190, 462, 683, 810, 814, 875, 881
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	6 cut(s)	80, 229, 251, 535, 594, 708
NlaIV	GGNNCC	6 cut(s)	91, 238, 283, 352, 765, 784
NmuCI	GTSAC	3 cut(s)	217, 504, 662
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	258
PceI	AGGCCT	1 cut(s)	70
PciI	ACATGT	1 cut(s)	225
PctI	GAATGC	1 cut(s)	601
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	343
PscI	ACATGT	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	556
PspEI	GGTNACC	2 cut(s)	217, 662
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	6 cut(s)	91, 238, 283, 352, 765, 784
PspOMI	GGGCCC	1 cut(s)	782
PspPI	GGNCC	2 cut(s)	782, 783
PstI	CTGCAG	2 cut(s)	310, 343
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	3 cut(s)	683, 875, 881
RsaI	GTAC	2 cut(s)	416, 536
RsaNI	GTAC	2 cut(s)	415, 535
SacI	GAGCTC	1 cut(s)	565
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	8 cut(s)	136, 190, 462, 683, 810, 814, 875, 881
Sau96I	GGNCC	2 cut(s)	782, 783
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	3 cut(s)	267, 565, 786
SfcI	CTRYAG	3 cut(s)	306, 339, 365
SfuI	TTCGAA	1 cut(s)	258
SseBI	AGGCCT	1 cut(s)	70
SspMI	CTAG	3 cut(s)	66, 680, 779
SstI	GAGCTC	1 cut(s)	565
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	2 cut(s)	346, 492
TaaI	ACNGT	3 cut(s)	217, 369, 842
TaiI	ACGT	2 cut(s)	18, 294
TaqI	TCGA	3 cut(s)	40, 258, 813
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	3 cut(s)	302, 660, 805
TseFI	GTSAC	3 cut(s)	217, 504, 662
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	3 cut(s)	217, 504, 662
TspDTI	ATGAA	3 cut(s)	93, 264, 809
TspRI	CASTG	3 cut(s)	302, 660, 805
Van91I	CCANNNNNTGG	1 cut(s)	424
XceI	RCATGY	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	3 cut(s)	66, 680, 779
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.