Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008258

Physical Location & Seq

Genomic Coordinates Forward (+)

16818341 .. 16821125

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCTGGGACAGAAGTTTCACTCGGTTTTGAAGGACGAGCTGTGGTGAGCAAGTTCTTGGCCAGGCCTCAGCATGAAGGAGTTGGTGCCATTGTTAGAAGAAGCATTGGGAGGTTTGATCTGGGATACTTTGATCCTTTTCTTGTTCTGGATGAGTTCTCAGTTACAGCTCCTGCTGGTTTTCCTGATCATCCACACCGAGGGTTTGAGACAGTGACCTACATGTTGCAGGGAGCCATCACACATGAAGATTTTGAAGGGCACAAAGGGACGATCGGAGCCGGCGATGTGCAGTGGATGACTGCAGGTAGAGGTATCGTTCACTCGGAAATGCCTGCAGCCCAAGGAACCCAAAAGGGTCTACAGTTGTGGATAAACCTTTCCTCCAAACATAAAATGATTGAGCCAAAATACCAAGAAATGGTGAGCAAGGACATTGCAGAGGCTACAAAAGATGGGATCAAGGTTAGAGTGATAGCAGGAGAAGCCTTGGGAACAAAGTCACCAATTTACACAAGAACCCCAACCATGTACTTGGACTTCACTCTCAAACCAGGAGCTCACCTTCAGCAACCAATATCAGTATCATGGAATGCATTTGTATATGTCTTGGAGGGGGAAGGTATTTTTGGAACTTCAAAGTCTATGCCAGTGGCAGGTCACCACCTTCTTGTTCTAGGATCTGGGGATGGATTGGAGGCATGGAACAAGTCTTCCAAGAACCTTAGGTTTATATTAGTTGGAGGCCAACCTTTGGGGGAGCCTGTAAAGCAACTTGGTCCCTTTGTGATGAACACAGATGAAGAGATTGATCAAACCATTGATGATTTTGAAAATTGTGTCAATGGATTTGAGAAGGCAACACACTGGAGATCTGGATCTGCACTGAACCTTGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

301

Amino Acids

32.81

Weight (kDa)

5.76

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	34 - 125	2.4e-31	Pirin
Pirin_C	PF05726	178 - 282	3.8e-32	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50590 AT1G50590 AT1G50590
fragaria_vesca	FvH4_3g23750
malus_domestica	MD03G1190300.v1.1 MD11G1206900.v1.1
prunus_persica	Prupe.4G229700_v2.0.a1
pyrus_communis	pycom03g14310 pycom11g17990
rosa_chinensis	RchiOBHm_Chr5g0041911 RchiOBHm_Chr5g0041961
rosa_laevigata	RLG00000034105
rosa_multiflora	Rmu_co8239403.1_g000001 Rmu_sc0009443.1_g000006 Rmu_sc0010997.1_g000001
rosa_rugosa	Rorug05G0197300
rosa_samantha	Rh5AG281800 Rh5AG282200 Rh5BG287300 Rh5BG287800 Rh5CG319600 Rh5DG296700
rosa_wichuraiana	Rw0G001360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	296, 647
AccB1I	GGYRCC	1 cut(s)	86
AccB7I	CCANNNNNTGG	2 cut(s)	421, 754
AccI	GTMKAC	1 cut(s)	361
AclWI	GGATC	4 cut(s)	128, 467, 688, 886
AcoI	YGGCCR	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	551
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	4 cut(s)	200, 421, 656, 754
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	4 cut(s)	32, 257, 639, 833
AjnI	CCWGG	2 cut(s)	62, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AloI	GAACNNNNNNTCC	2 cut(s)	698, 730
AluBI	AGCT	3 cut(s)	41, 170, 560
AluI	AGCT	3 cut(s)	41, 170, 560
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	4 cut(s)	128, 467, 688, 886
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	3 cut(s)	60, 65, 745
ApeKI	GCWGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	779
AsuHPI	GGTGA	5 cut(s)	58, 436, 495, 554, 653
AvaII	GGWCC	1 cut(s)	779
AxyI	CCTNAGG	1 cut(s)	725
BaeGI	GKGCMC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	562
BarI	GAAGNNNNNNTAC	2 cut(s)	524, 556
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	562
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	3 cut(s)	245, 449, 683
BciT130I	CCWGG	2 cut(s)	64, 555
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	2 cut(s)	187, 811
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	677
BfmI	CTRYAG	3 cut(s)	303, 336, 362
BfuAI	ACCTGC	2 cut(s)	296, 647
BfuI	GTATCC	1 cut(s)	119
BglII	AGATCT	1 cut(s)	872
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	64, 555
Bme18I	GGWCC	1 cut(s)	779
BmgT120I	GGNCC	1 cut(s)	779
BmiI	GGNNCC	6 cut(s)	88, 235, 280, 349, 762, 781
BmrFI	CCNGG	2 cut(s)	64, 555
BpiI	GAAGAC	1 cut(s)	705
BpmI	CTGGAG	1 cut(s)	889
Bpu10I	CCTNAGC	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	877
BsaJI	CCNNGG	3 cut(s)	199, 343, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 421, 656, 754
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	650, 872
Bse21I	CCTNAGG	1 cut(s)	725
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	877
BseBI	CCWGG	2 cut(s)	64, 555
BseDI	CCNNGG	3 cut(s)	199, 343, 489
BseGI	GGATG	4 cut(s)	157, 190, 303, 694
BseJI	GATNNNNATC	1 cut(s)	877
BseLI	CCNNNNNNNGG	4 cut(s)	200, 421, 656, 754
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	83, 174
BseNI	ACTGG	2 cut(s)	650, 872
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	350
BsgI	GTGCAG	2 cut(s)	311, 867
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	62, 67, 747
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	3 cut(s)	22, 283, 765
BslI	CCNNNNNNNGG	4 cut(s)	200, 421, 656, 754
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	3 cut(s)	22, 283, 765
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	3 cut(s)	62, 67, 747
Bsp1286I	GDGCHC	2 cut(s)	264, 562
Bsp143I	GATC	9 cut(s)	118, 133, 187, 273, 459, 680, 811, 872, 878
BspANI	GGCC	3 cut(s)	62, 67, 747
BspCNI	CTCAG	2 cut(s)	82, 173
BspLI	GGNNCC	6 cut(s)	88, 235, 280, 349, 762, 781
BspMAI	CTGCAG	2 cut(s)	307, 340
BspMI	ACCTGC	2 cut(s)	296, 647
BspPI	GGATC	4 cut(s)	128, 467, 688, 886
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	650, 872
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	199, 343, 489
BssMI	GATC	9 cut(s)	118, 133, 187, 273, 459, 680, 811, 872, 878
BssT1I	CCWWGG	2 cut(s)	343, 489
Bst2UI	CCWGG	2 cut(s)	64, 555
Bst4CI	ACNGT	2 cut(s)	214, 366
Bst6I	CTCTTC	1 cut(s)	798
BstC8I	GCNNGC	2 cut(s)	283, 336
BstDEI	CTNAG	3 cut(s)	69, 160, 725
BstEII	GGTNACC	1 cut(s)	659
BstF5I	GGATG	4 cut(s)	157, 190, 303, 694
BstKTI	GATC	9 cut(s)	121, 136, 190, 276, 462, 683, 814, 875, 881
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	9 cut(s)	118, 133, 187, 273, 459, 680, 811, 872, 878
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 769
BstNI	CCWGG	2 cut(s)	64, 555
BstNSI	RCATGY	1 cut(s)	226
BstPI	GGTNACC	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	62, 553
BstSFI	CTRYAG	3 cut(s)	303, 336, 362
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	705
BstX2I	RGATCY	3 cut(s)	680, 872, 878
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	3 cut(s)	680, 872, 878
Bsu36I	CCTNAGG	1 cut(s)	725
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	62, 67, 747
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	4 cut(s)	157, 190, 303, 694
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	5 cut(s)	219, 299, 657, 865, 884
BveI	ACCTGC	2 cut(s)	296, 647
Cac8I	GCNNGC	2 cut(s)	283, 336
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	779
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	6 cut(s)	74, 223, 245, 529, 588, 702
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	3 cut(s)	69, 160, 725
DpnI	GATC	9 cut(s)	120, 135, 189, 275, 461, 682, 813, 874, 880
DpnII	GATC	9 cut(s)	118, 133, 187, 273, 459, 680, 811, 872, 878
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	343, 489
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	779
Eco53kI	GAGCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	551
Eco81I	CCTNAGG	1 cut(s)	725
Eco91I	GGTNACC	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	560
EcoO65I	GGTNACC	1 cut(s)	659
EcoRII	CCWGG	2 cut(s)	62, 553
EcoT14I	CCWWGG	2 cut(s)	343, 489
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	2 cut(s)	343, 489
FaeI	CATG	6 cut(s)	77, 226, 248, 532, 591, 705
FaqI	GGGAC	3 cut(s)	22, 283, 765
FatI	CATG	6 cut(s)	73, 222, 244, 528, 587, 701
FbaI	TGATCA	2 cut(s)	187, 811
FblI	GTMKAC	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	4 cut(s)	164, 177, 310, 701
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	677
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	889
HaeIII	GGCC	3 cut(s)	62, 67, 747
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	6 cut(s)	77, 226, 248, 532, 591, 705
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	5 cut(s)	58, 436, 495, 554, 653
Hpy166II	GTNNAC	2 cut(s)	322, 362
Hpy188I	TCNGA	2 cut(s)	278, 328
Hpy188III	TCNNGA	3 cut(s)	149, 185, 876
Hpy8I	GTNNAC	2 cut(s)	322, 362
HpyAV	CCTTC	7 cut(s)	26, 71, 251, 575, 614, 677, 850
HpyCH4III	ACNGT	2 cut(s)	214, 366
HpyCH4V	TGCA	7 cut(s)	229, 292, 305, 338, 440, 596, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 769
HpyF3I	CTNAG	3 cut(s)	69, 160, 725
Hsp92II	CATG	6 cut(s)	77, 226, 248, 532, 591, 705
KroI	GCCGGC	1 cut(s)	281
KroNI	GCCGGC	1 cut(s)	283
Ksp22I	TGATCA	2 cut(s)	187, 811
Kzo9I	GATC	9 cut(s)	118, 133, 187, 273, 459, 680, 811, 872, 878
LmnI	GCTCC	5 cut(s)	175, 233, 278, 557, 760
Lsp1109I	GCAGC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	677
MaeIII	GTNAC	4 cut(s)	163, 214, 501, 659
MalI	GATC	9 cut(s)	120, 135, 189, 275, 461, 682, 813, 874, 880
MboI	GATC	9 cut(s)	118, 133, 187, 273, 459, 680, 811, 872, 878
MboII	GAAGA	4 cut(s)	111, 260, 705, 815
MflI	RGATCY	3 cut(s)	680, 872, 878
MhlI	GDGCHC	2 cut(s)	264, 562
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	2 cut(s)	507, 835
MluNI	TGGCCA	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	721
MnlI	CCTC	9 cut(s)	78, 105, 194, 305, 394, 436, 607, 691, 737
Mox20I	TGGCCA	1 cut(s)	62
Mph1103I	ATGCAT	1 cut(s)	598
MroNI	GCCGGC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	2 cut(s)	64, 555
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	2 cut(s)	64, 555
MwoI	GCNNNNNNNGC	2 cut(s)	485, 769
NaeI	GCCGGC	1 cut(s)	283
NdeII	GATC	9 cut(s)	118, 133, 187, 273, 459, 680, 811, 872, 878
NgoMIV	GCCGGC	1 cut(s)	281
NlaIII	CATG	6 cut(s)	77, 226, 248, 532, 591, 705
NlaIV	GGNNCC	6 cut(s)	88, 235, 280, 349, 762, 781
NmuCI	GTSAC	3 cut(s)	214, 501, 659
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	67
PciI	ACATGT	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PctI	GAATGC	1 cut(s)	598
PdiI	GCCGGC	1 cut(s)	283
PflMI	CCANNNNNTGG	2 cut(s)	421, 754
PkrI	GCNGC	1 cut(s)	340
Ple19I	CGATCG	1 cut(s)	276
PscI	ACATGT	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	62, 553
PspEI	GGTNACC	1 cut(s)	659
PspGI	CCWGG	2 cut(s)	62, 553
PspN4I	GGNNCC	6 cut(s)	88, 235, 280, 349, 762, 781
PspPI	GGNCC	1 cut(s)	779
PstI	CTGCAG	2 cut(s)	307, 340
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	3 cut(s)	680, 872, 878
PvuI	CGATCG	1 cut(s)	276
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	562
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	9 cut(s)	118, 133, 187, 273, 459, 680, 811, 872, 878
Sau96I	GGNCC	1 cut(s)	779
ScrFI	CCNGG	2 cut(s)	64, 555
SduI	GDGCHC	2 cut(s)	264, 562
SfcI	CTRYAG	3 cut(s)	303, 336, 362
SinI	GGWCC	1 cut(s)	779
Sse9I	AATT	2 cut(s)	507, 835
SseBI	AGGCCT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	677
SstI	GAGCTC	1 cut(s)	562
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	62, 553
StyI	CCWWGG	2 cut(s)	343, 489
TaaI	ACNGT	2 cut(s)	214, 366
TasI	AATT	2 cut(s)	507, 835
TatI	WGTACW	1 cut(s)	531
TscAI	CASTG	5 cut(s)	219, 299, 657, 872, 891
TseFI	GTSAC	3 cut(s)	214, 501, 659
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	3 cut(s)	214, 501, 659
TspDTI	ATGAA	4 cut(s)	90, 261, 806, 816
TspRI	CASTG	5 cut(s)	219, 299, 657, 872, 891
Van91I	CCANNNNNTGG	2 cut(s)	421, 754
VpaK11BI	GGWCC	1 cut(s)	779
XceI	RCATGY	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	361
XspI	CTAG	1 cut(s)	677
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.