Rmu_co8239403.1_g000001

Belongs to the pirin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8239403.1
OG0008258
Physical Location & Seq
Forward (+)
229 .. 711
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8239403.1_g000001.1.cds

Sequence Viewer

Length: 483 bp
atggtcagcaaggacattgcagaggctacaaaagatgggatcgaggttagagtgatagcaggagaagccttggaaacaaagtcacctatctacacaagaaccccaaccatgtacttggacttcactctcaaaccaggagctcaccttgagcaaccaataccaacatcatggaatgcatttgtatacgtcttggagggggagggcatttttggaactccaaagtcattgccagtggcaggtcaccaccttcttcttttaggatctggggatgggttggaggcatggaacatgtcatccaagaaccttaggtttatattagttggaggtcaacctttgggggagcctgtaaagcaactagggccctttgtgatgaacactgaggaagagattgatcaaaccattgatgactttgaaaactgtatcaatggatttgagaaggcaacacattggagatctggatctgcactcagccttgatttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pirin Pirin_C

Protein Analysis

160

Amino Acids

17.52

Weight (kDa)

4.73

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 183
AclWI GGATC 3 cut(s) 47, 268, 466
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 413
AjnI CCWGG 1 cut(s) 133
AloI GAACNNNNNNTCC 2 cut(s) 278, 310
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 142
AlwI GGATC 3 cut(s) 47, 268, 466
AoxI GGCC 1 cut(s) 359
ApaI GGGCCC 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 359, 360
AsuHPI GGTGA 3 cut(s) 75, 134, 233
AxyI CCTNAGG 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 363
BanII GRGCYC 2 cut(s) 142, 363
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
Bbv12I GWGCWC 1 cut(s) 142
BccI CCATC 2 cut(s) 29, 263
BciT130I CCWGG 1 cut(s) 135
BclI TGATCA 1 cut(s) 391
BfaI CTAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 227
BglII AGATCT 1 cut(s) 452
Bme1390I CCNGG 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 359, 360
BmiI GGNNCC 2 cut(s) 342, 361
BmrFI CCNGG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 230
Bse21I CCTNAGG 1 cut(s) 305
Bse3DI GCAATG 2 cut(s) 15, 224
Bse8I GATNNNNATC 1 cut(s) 457
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 274, 293
BseJI GATNNNNATC 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 2 cut(s) 15, 224
BseMII CTCAG 2 cut(s) 369, 481
BseNI ACTGG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 236
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 361
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 142, 363
Bsp143I GATC 5 cut(s) 39, 260, 391, 452, 458
BspANI GGCC 1 cut(s) 361
BspCNI CTCAG 2 cut(s) 370, 480
BspLI GGNNCC 2 cut(s) 342, 361
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 3 cut(s) 47, 268, 466
BsrDI GCAATG 2 cut(s) 15, 224
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 5 cut(s) 39, 260, 391, 452, 458
BssNAI GTATAC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 69
Bst1107I GTATAC 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 1 cut(s) 378
BstDEI CTNAG 3 cut(s) 305, 378, 467
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 2 cut(s) 274, 293
BstKTI GATC 5 cut(s) 42, 263, 394, 455, 461
BstMBI GATC 5 cut(s) 39, 260, 391, 452, 458
BstMWI GCNNNNNNNGC 3 cut(s) 65, 349, 358
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 292
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 363
BstX2I RGATCY 3 cut(s) 260, 452, 458
BstXI CCANNNNNNTGG 2 cut(s) 115, 168
BstYI RGATCY 3 cut(s) 260, 452, 458
BstZ17I GTATAC 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 305
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 274, 293
BtsIMutI CAGTG 2 cut(s) 237, 375
BveI ACCTGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 359, 360
Csp6I GTAC 1 cut(s) 112
CviAII CATG 4 cut(s) 109, 168, 282, 289
CviJI RGCY 6 cut(s) 26, 68, 140, 343, 361, 471
CviKI_1 RGCY 6 cut(s) 26, 68, 140, 343, 361, 471
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 3 cut(s) 305, 378, 467
DpnI GATC 5 cut(s) 41, 262, 393, 454, 460
DpnII GATC 5 cut(s) 39, 260, 391, 452, 458
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Ecl136II GAGCTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 142, 363
Eco53kI GAGCTC 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 305
Eco91I GGTNACC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 140
EcoO109I RGGNCCY 2 cut(s) 359, 360
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 2 cut(s) 142, 363
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 4 cut(s) 112, 171, 285, 292
FaiI YATR 6 cut(s) 110, 169, 184, 283, 290, 314
FatI CATG 4 cut(s) 108, 167, 281, 288
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 1 cut(s) 183
FokI GGATG 2 cut(s) 280, 281
FriOI GRGCYC 2 cut(s) 142, 363
FspBI CTAG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 361
Hin1II CATG 4 cut(s) 112, 171, 285, 292
HincII GTYRAC 1 cut(s) 329
HindII GTYRAC 1 cut(s) 329
HphI GGTGA 3 cut(s) 75, 134, 233
Hpy166II GTNNAC 2 cut(s) 184, 329
Hpy188III TCNNGA 1 cut(s) 456
Hpy8I GTNNAC 2 cut(s) 184, 329
HpyAV CCTTC 2 cut(s) 257, 430
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 20, 176, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 349, 358
HpyF3I CTNAG 3 cut(s) 305, 378, 467
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 4 cut(s) 112, 171, 285, 292
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 5 cut(s) 39, 260, 391, 452, 458
LmnI GCTCC 2 cut(s) 137, 340
LpnPI CCDG 8 cut(s) 45, 120, 147, 222, 243, 249, 357, 441
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 81, 239
MalI GATC 5 cut(s) 41, 262, 393, 454, 460
MboI GATC 5 cut(s) 39, 260, 391, 452, 458
MboII GAAGA 2 cut(s) 242, 395
MflI RGATCY 3 cut(s) 260, 452, 458
MhlI GDGCHC 2 cut(s) 142, 363
MmeI TCCRAC 2 cut(s) 255, 301
MnlI CCTC 7 cut(s) 16, 37, 187, 193, 271, 317, 373
Mph1103I ATGCAT 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 65, 349, 358
NdeII GATC 5 cut(s) 39, 260, 391, 452, 458
NlaIII CATG 4 cut(s) 112, 171, 285, 292
NlaIV GGNNCC 2 cut(s) 342, 361
NmuCI GTSAC 2 cut(s) 81, 239
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 292
PciI ACATGT 1 cut(s) 288
PctI GAATGC 1 cut(s) 178
PscI ACATGT 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 133
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 342, 361
PspOMI GGGCCC 1 cut(s) 359
PspPI GGNCC 2 cut(s) 359, 360
PsuI RGATCY 3 cut(s) 260, 452, 458
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 142
Sau3AI GATC 5 cut(s) 39, 260, 391, 452, 458
Sau96I GGNCC 2 cut(s) 359, 360
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 2 cut(s) 142, 363
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 42
TatI WGTACW 1 cut(s) 111
TscAI CASTG 2 cut(s) 237, 382
TseFI GTSAC 2 cut(s) 81, 239
Tsp45I GTSAC 2 cut(s) 81, 239
TspDTI ATGAA 1 cut(s) 386
TspRI CASTG 2 cut(s) 237, 382
XceI RCATGY 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.